mRNA_H-canaliculatus_F_contig1234.1998.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1234.1998.1 vs. uniprot
Match: A0A6H5KB32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB32_9PHAE) HSP 1 Score: 597 bits (1538), Expect = 4.220e-188 Identity = 408/787 (51.84%), Postives = 464/787 (58.96%), Query Frame = 3
Query: 1164 KEEGA--ARLHAYQLVSGEPRLLLLLRPGAAPDLLAARLRFLLDSLPGLRGSDDCCRCCWNAGAPLKRAAPLLAIDSATLGRRLEGLAEILPPTVDAQQ--------AIVNQAPLLLRQSTEALSEALVSTERLIPGLRMDRVLRSAPHLLVQPLDLVERRLAHLREVLGLTPSPELERMRIAAEAQQITTITXXXXXXX-----------------------------RRLARFANAFPQILTMDPNTVQAKIEGLEDLLPGVDGLAVVSSRPQLLGFDVWRNVSLKVSRLKELMTRARVRQGPDVPRHQQRLQEQLHEHQEQGQRGMHQDGSKLEGLRGQGRGRQRGRHLIILPSD-TTASDDLAAAVTRCPSLLTLSSDTTMRKVQEFQEALPSGLDARTIVAKEPRVLALDMGSTVPRKLQDLARAFGEHASYPVTTAGASGDGXXXXXXXRGGDTGTGRVEEAGGATAETAVAAAAIADGVMAQVLRYFPNALRFEPATLARKLEALQRAGLSPEMALEVIGGAPRCLSVAEGTLERRVSALREAFPSVPLSRLLGEAPCLLQNRIDPAAKVEVLQELFPSSDPVSLVEGAPMLLALSPRTLRVKSDAWRHILEDRIDVSWEQTVAEFPQLLCQGLGRAARVAFLLL-------------------AADDERATS-----VTAAANEDKLVESTPLPSY----FRVGDGDNAGVNAAXXXXXXXXXXXXXXXXXXXXXXXXXX--KRMSAAAACGEICRRVSDFESDHPSYPAFLGSLLLAA 3314
+E+G ARLHAYQLVS EPRLLLL A P+L + RLRFLL+ LP LRGS W+A L+RAAPLLAI+S+ L RLEGLA++ PP D Q AIVNQ PLLLR TE +SEAL + ERL+PGLRMDRVLRSAP LLVQPLD+VE+RLA LR VL LTPSPE+ERMRI E + ++ RRLARFAN FPQILTM+P+TV+AKIEGLE LLPG+DGLA+V SRP LLGFDV RNVSLKVSRL+ELM + + L Q +GQ Q+ S + G G R R +L + T ASDDL AAV RCPSLLTLSS+T+MRKV++ QEALPSGL ARTIVAKEPRV++LDM STVPRKL DL+ AF E A XXXXXXX +MAQ LRY PNALRF+PATLARKLE L+ AGLS E V+GGAPRCLS A GTLE RVSALREAFPSVPLSRLLGEAPCLLQ IDP AK MLLALS +TLRVK DAWR I+EDR+DV WEQ VA+FPQLLCQG GRAARV FLLL ER + V A D+++ +T P GDG A AA + MSAAAAC E+CRRVSDFESDHP YP FL SLL+AA
Sbjct: 62 REQGGEGARLHAYQLVSSEPRLLLL---RAEPEL-SGRLRFLLEMLPSLRGS-------WSAR--LRRAAPLLAIESSALQSRLEGLADLFPPDADLQVGAGLFIGGAIVNQTPLLLRHRTEKVSEALANIERLVPGLRMDRVLRSAPQLLVQPLDVVEKRLAQLRAVLCLTPSPEVERMRITLEPNNSSDVSIESDSGSGRRGGGDRDDDIGSRGGGRVGGGGRPAGVRRLARFANGFPQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELM-----------------MDQSLAPQQRRGQ----QETSTMVG------GALRLRTFFLLRAKGTDASDDLVAAVARCPSLLTLSSNTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLSHAFAELAGGXXXXXXXXXXXXXXXXXXX------------------------XXXXXMMAQTLRYNPNALRFDPATLARKLEVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKXXXXXXXXXXXXXXXXXXXXXMLLALSEKTLRVKRDAWRSIVEDRVDVPWEQVVADFPQLLCQGFGRAARVPFLLLDXXXXXXXXXXXXXXXXXXXXXGERVVTTAVAMVAAGGLGDEVLRATHAPGVASDGVAAGDGVGAAAAAAAGGDSWRSGVGKERSAGGGVDGGSGVAPRTMSAAAACREVCRRVSDFESDHPGYPCFLDSLLVAA 784
BLAST of mRNA_H-canaliculatus_F_contig1234.1998.1 vs. uniprot
Match: D7G2Q0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q0_ECTSI) HSP 1 Score: 373 bits (957), Expect = 3.730e-111 Identity = 241/421 (57.24%), Postives = 269/421 (63.90%), Query Frame = 3
Query: 1779 MDPNTVQAKIEGLEDLLPGVDGLAVVSSRPQLLGFDVWRNVSLKVSRLKELMTRARVRQGPDVPRHQQRLQEQLHEHQEQGQRGMHQDGSKLEGLRGQGRGRQRGRHLIILPSDTTASDDLAAAVTRCPSLLTLSSDTTMRKVQEFQEALPSGLDARTIVAKEPRVLALDMGSTVPRKLQDLARAFGEHASYPVTTAGASGDGXXXXXXXRGGDTGTGRVEEAGGATAETAVAAAAIADGVMAQVLRYFPNALRFEPATLARKLEALQRAGLSPEMALEVIGGAPRCLSVAEGTLERRVSALREAFPSVPLSRLLGEAPCLLQNRIDPAAKVEVLQELFPSSDPVSLVEGAPMLLALSPRTLRVKSDAWRHILEDRIDVSWEQTVAEFPQLLCQGLGRAARVAFLLLAADDERATSVTAAA 3041
M+P+TV+AKIEGLE LLPG+DGLA+V SRP LLGFDV RNVSLKVSRL+ELM + + L Q +GQ+ GRG+Q ++ + T ASDDL AAV RCPSLLTLSSDT+MRKV++ QEALPSGL ARTIVAKEPRV++LDM STVPRKL DLARAF EHA XXXXXXX +MAQ LRY PNALRF+PATLARKL L+ AGLS E V+GGAPRCLS A GTLE RVSALREAFPSVPLSRLLGEAPCLLQ IDP AK+ MLLALS TLRVK DAWR ILE+R+DV WEQ VA+FPQLLCQGLGRAARV FLLL DD A + T A
Sbjct: 1 MEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELM-----------------MDQSLPPQQRRGQQ--------------PGRGQQETSNMA---NGTDASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMTSTVPRKLADLARAFTEHAGGXXXXXXXXXXXXXXXXXXXXXXV-------------------------MMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXXXXXMLLALSENTLRVKRDAWRSILENRVDVPWEQVVADFPQLLCQGLGRAARVPFLLL--DDPPAVASTTMA 360 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1234.1998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1234.1998.1 >prot_H-canaliculatus_F_contig1234.1998.1 ID=prot_H-canaliculatus_F_contig1234.1998.1|Name=mRNA_H-canaliculatus_F_contig1234.1998.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1304bp MEPGKRRRPWGRQPSGSAGSAAAVAAAAAFALAAISVPKTDALYVSHLPVback to top mRNA from alignment at H-canaliculatus_F_contig1234:10648..19775- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1234.1998.1 ID=mRNA_H-canaliculatus_F_contig1234.1998.1|Name=mRNA_H-canaliculatus_F_contig1234.1998.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9128bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:10648..19775- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1234:10648..19775- >mRNA_H-canaliculatus_F_contig1234.1998.1 ID=mRNA_H-canaliculatus_F_contig1234.1998.1|Name=mRNA_H-canaliculatus_F_contig1234.1998.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=7824bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:10648..19775- (Hapterophycus canaliculatus Oshoro5f female)back to top |