mRNA_H-canaliculatus_F_contig1234.1995.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1234.1995.1
Unique NamemRNA_H-canaliculatus_F_contig1234.1995.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1234.1995.1 vs. uniprot
Match: A0A6H5KD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD91_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.280e-6
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 2 
Query:   17 DDFYAENIRKYRLRLIEILKANGPLRAMSFLEVKRVQPLPHVGMKMKELFDRGLMGGVKSYVWKGVVYFKLSEDWEES 250
            D+    N   +R +L+  L+ NG  R MSF +++     P+V   ++E+F R L+ GV+SY+  G VYFKL E   E+
Sbjct:  938 DNHTIRNCSLFREKLVAALRKNGTDRPMSFSDMRSSVARPNVRYSLREIFQRRLVRGVRSYMRDGEVYFKLCEQGLEN 1015
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1234.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD91_9PHAE1.280e-637.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1234contigH-canaliculatus_F_contig1234:1240..2266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.6286745-CDS-H-canaliculatus_F_contig1234:1239..13881622928949.6286745-CDS-H-canaliculatus_F_contig1234:1239..1388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1234 1240..1388 -
1696845625.7801316-CDS-H-canaliculatus_F_contig1234:1239..13881696845625.7801316-CDS-H-canaliculatus_F_contig1234:1239..1388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1234 1240..1388 -
1622928949.644637-CDS-H-canaliculatus_F_contig1234:2115..22661622928949.644637-CDS-H-canaliculatus_F_contig1234:2115..2266Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1234 2116..2266 -
1696845625.7923632-CDS-H-canaliculatus_F_contig1234:2115..22661696845625.7923632-CDS-H-canaliculatus_F_contig1234:2115..2266Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1234 2116..2266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1234.1995.1prot_H-canaliculatus_F_contig1234.1995.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1234 1240..2266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1234.1995.1

>prot_H-canaliculatus_F_contig1234.1995.1 ID=prot_H-canaliculatus_F_contig1234.1995.1|Name=mRNA_H-canaliculatus_F_contig1234.1995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
SLALARRLLRGEHPEIQAASHRDPQGEWPSSRDVVLGGEEGPALAARGHE
DERVVRQRSHGGREVVRLERSRLLQAVRGLGRERQRPARRHRRRPAAGKR
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mRNA from alignment at H-canaliculatus_F_contig1234:1240..2266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1234.1995.1 ID=mRNA_H-canaliculatus_F_contig1234.1995.1|Name=mRNA_H-canaliculatus_F_contig1234.1995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:1240..2266- (Hapterophycus canaliculatus Oshoro5f female)
TCACTGGCGCTGGCGCGACGACTTCTACGCGGAGAACATCCGGAAATACA
GGCTGCGTCTCATCGAGATCCTCAAGGCGAATGGCCCTCTTCGCGCGATG
TCGTTCTTGGAGGTGAAGAGGGTCCAGCCCTTGCCGCACGTGGGCATGAA
GGTGAGAAGCCGGCACGGAAGACGAGAGATAAGACAACAACATTACGAGA
ACAAGAAAGGACAAGACACGCTTGCTTCCCGGCAGTGGTCGCGCGCGCGC
GTGTGTGTGTGCCTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTATGTGTGTGTGTGTATGTGTGCGTGTGTGTACATGTTT
TTTTCGTGAGCCTGCTCGTTGGGGTATATCGGGGCCTTCTTTCGGGTTGC
TCTTGGTCCCTCGTGCGCGCTGTTGCTGAACGCGCCTCCGTGTCTCTCAG
TCTCGACGGTCCCGCCGCCTCCGTGGCTCCGCTGCTTCGATCCGTTCGTT
TCCTCCCTGAGCCCTGGGTCAGTCAGGCCTCTCGTGCTTCGAACCAAGAA
CTGCCACGTATCGCGGGATTCGTTTGAGAACGGACACATGCAAATCGTTC
AGGAACTTCCGTCGGCCACGAGGGGTTTGAACCCTTAGTTGGAAGGACGG
GCGTTCGACCTCGGCGTCATGTTGTTGGATCGCGATAACTGCTCCCGCCG
TATTGTACGGTGAACACAGCGGCGGAGCTCCTTGTCACCAGTGAAAGTAC
GACTAGCCTTCCGACAATTGCGTAATCTACCCCCCGGCCTCCTCTCCCTC
CTCTCCCTTCTCCTCGAACTCCGCGCAGATGAAAGAGTTGTTCGACAGAG
GTCTCATGGGGGGCGTGAAGTCGTACGTCTGGAAAGGAGTCGTTTACTTC
AAGCTGTCCGAGGACTGGGAAGAGAGCGGCAACGGCCAGCACGGCGGCAT
CGGCGACGCCCCGCCGCCGGGAAACGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1234:1240..2266-

>mRNA_H-canaliculatus_F_contig1234.1995.1 ID=mRNA_H-canaliculatus_F_contig1234.1995.1|Name=mRNA_H-canaliculatus_F_contig1234.1995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1234:1240..2266- (Hapterophycus canaliculatus Oshoro5f female)
TCACTGGCGCTGGCGCGACGACTTCTACGCGGAGAACATCCGGAAATACA
GGCTGCGTCTCATCGAGATCCTCAAGGCGAATGGCCCTCTTCGCGCGATG
TCGTTCTTGGAGGTGAAGAGGGTCCAGCCCTTGCCGCACGTGGGCATGAA
GTCACTGGCGCTGGCGCGACGACTTCTACGCGGAGAACATCCGGAAATAC
AGGCTGCGTCTCATCGAGATCCTCAAGGCGAATGGCCCTCTTCGCGCGAT
GTCGTTCTTGGAGGTGAAGAGGGTCCAGCCCTTGCCGCACGTGGGCATGA
AGATGAAAGAGTTGTTCGACAGAGGTCTCATGGGGGGCGTGAAGTCGTAC
GTCTGGAAAGGAGTCGTTTACTTCAAGCTGTCCGAGGACTGGGAAGAGAG
CGGCAACGGCCAGCACGGCGGCATCGGCGACGCCCCGCCGCCGGGAAACG
GATGAAAGAGTTGTTCGACAGAGGTCTCATGGGGGGCGTGAAGTCGTACG
TCTGGAAAGGAGTCGTTTACTTCAAGCTGTCCGAGGACTGGGAAGAGAGC
GGCAACGGCCAGCACGGCGGCATCGGCGACGCCCCGCCGCCGGGAAACGG
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