prot_H-canaliculatus_F_contig12332.1991.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12332.1991.1
Unique Nameprot_H-canaliculatus_F_contig12332.1991.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length196
Homology
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A6H5JIQ8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.280e-27
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 0
Query:    1 GAPLEGQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            G+ LEGQECAVCKD+F AG+KARELPCQH+FHE CILPW+AERNTCPTCRHELPTD
Sbjct:  399 GSELEGQECAVCKDEFAAGEKARELPCQHSFHEQCILPWVAERNTCPTCRHELPTD 454          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: D8T3I3_SELML (RING-type domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T3I3_SELML)

HSP 1 Score: 90.5 bits (223), Expect = 2.780e-20
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    5 EGQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            +G +CAVCKD+FE G + R++PC+H +H  CILPWLA+ N+CP CRHE+PTD
Sbjct:   41 DGGQCAVCKDEFELGSEVRQMPCKHLYHGDCILPWLAQHNSCPVCRHEMPTD 92          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A7J9KW46_GOSSC (RING-type domain-containing protein (Fragment) n=1 Tax=Gossypium schwendimanii TaxID=34291 RepID=A0A7J9KW46_GOSSC)

HSP 1 Score: 89.0 bits (219), Expect = 3.420e-19
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    9 CAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            CAVCK+ FE G +ARE+PC+H +HE CI+PWLA RN+CP CRHELP+D
Sbjct:   68 CAVCKEPFELGSEAREMPCKHIYHEDCIIPWLALRNSCPLCRHELPSD 115          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A3B6NTF2_WHEAT (RING-type domain-containing protein n=4 Tax=Triticum TaxID=4564 RepID=A0A3B6NTF2_WHEAT)

HSP 1 Score: 92.4 bits (228), Expect = 4.750e-19
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0
Query:    6 GQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            G +CAVCKD  EAG+ AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  228 GAQCAVCKDGIEAGEGARRLPCAHLYHDACILPWLAIRNTCPLCRHELPTD 278          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: I1IEA5_BRADI (RING-type domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IEA5_BRADI)

HSP 1 Score: 92.4 bits (228), Expect = 5.090e-19
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    6 GQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            G +CAVCKD  EAGD AR LPC H +H  CILPWLA RNTCP CRHELPTD
Sbjct:  221 GAQCAVCKDGIEAGDGARRLPCAHLYHGGCILPWLAIRNTCPLCRHELPTD 271          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: F2D772_HORVV (Predicted protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2D772_HORVV)

HSP 1 Score: 92.4 bits (228), Expect = 5.230e-19
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0
Query:    6 GQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            G +CAVCKD  EAG+ AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  232 GAQCAVCKDGIEAGEGARRLPCAHLYHDACILPWLAIRNTCPLCRHELPTD 282          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A0E0DKZ8_9ORYZ (RING-type E3 ubiquitin transferase n=2 Tax=Oryzeae TaxID=147380 RepID=A0A0E0DKZ8_9ORYZ)

HSP 1 Score: 93.2 bits (230), Expect = 6.280e-19
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    9 CAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            CAVCKD FE GD+ARE+PC H +H+ CILPWLA RN+CP CRHE+PTD
Sbjct:  201 CAVCKDPFELGDEAREMPCSHIYHQDCILPWLALRNSCPVCRHEMPTD 248          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A0D9YXQ2_9ORYZ (RING-type domain-containing protein n=10 Tax=Oryza TaxID=4527 RepID=A0A0D9YXQ2_9ORYZ)

HSP 1 Score: 92.0 bits (227), Expect = 6.880e-19
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    8 ECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            +CAVCKD  EAG++AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  229 QCAVCKDGMEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELPTD 277          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A6G1DX55_9ORYZ (RING-type domain-containing protein n=2 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DX55_9ORYZ)

HSP 1 Score: 92.0 bits (227), Expect = 9.710e-19
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    8 ECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            +CAVCKD  EAG++AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  234 QCAVCKDGIEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELPTD 282          
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Match: A0A5J9UXH9_9POAL (RING-type domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UXH9_9POAL)

HSP 1 Score: 91.7 bits (226), Expect = 9.830e-19
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    8 ECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCRHELPTD 56
            +CAVCKD  EAG++AR LPC H +H+ CILPWLA RNTCP CRHELPTD
Sbjct:  224 QCAVCKDGVEAGERARRLPCAHLYHDGCILPWLAIRNTCPLCRHELPTD 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12332.1991.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIQ8_9PHAE2.280e-2785.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8T3I3_SELML2.780e-2061.54RING-type domain-containing protein (Fragment) n=3... [more]
A0A7J9KW46_GOSSC3.420e-1968.75RING-type domain-containing protein (Fragment) n=1... [more]
A0A3B6NTF2_WHEAT4.750e-1972.55RING-type domain-containing protein n=4 Tax=Tritic... [more]
I1IEA5_BRADI5.090e-1974.51RING-type domain-containing protein n=1 Tax=Brachy... [more]
F2D772_HORVV5.230e-1972.55Predicted protein n=2 Tax=Hordeum vulgare subsp. v... [more]
A0A0E0DKZ8_9ORYZ6.280e-1972.92RING-type E3 ubiquitin transferase n=2 Tax=Oryzeae... [more]
A0A0D9YXQ2_9ORYZ6.880e-1973.47RING-type domain-containing protein n=10 Tax=Oryza... [more]
A0A6G1DX55_9ORYZ9.710e-1973.47RING-type domain-containing protein n=2 Tax=Oryza ... [more]
A0A5J9UXH9_9POAL9.830e-1973.47RING-type domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 9..49
e-value: 2.0E-8
score: 44.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 8..50
e-value: 3.7E-14
score: 52.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 9..50
score: 12.622
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..64
e-value: 3.2E-21
score: 76.3
NoneNo IPR availablePANTHERPTHR15710:SF70E3 UBIQUITIN-PROTEIN LIGASE RDUF1coord: 8..120
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 8..120
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 5..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12332contigH-canaliculatus_F_contig12332:2283..3557 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12332.1991.1mRNA_H-canaliculatus_F_contig12332.1991.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12332 1965..3557 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12332.1991.1 ID=prot_H-canaliculatus_F_contig12332.1991.1|Name=mRNA_H-canaliculatus_F_contig12332.1991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=196bp
GAPLEGQECAVCKDDFEAGDKARELPCQHAFHEHCILPWLAERNTCPTCR
HELPTDDDDAGGGGGGDNSNNNSSNDGSNNDGRSSEVPYSRDVDDFSAAY
AGNDGGRGGGGGGEREDAAATGNDYSGGGHSRRSSSSRSADATATATSLS
TSSSSRSSTRRFRGSGGNDGSGGGNSGGTGGDQTRSGVSSTPDAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING