mRNA_H-canaliculatus_F_contig12329.1989.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12329.1989.1
Unique NamemRNA_H-canaliculatus_F_contig12329.1989.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.410e-46
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    4 LDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHS-DESTHSMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVTTPHVRLTELA 291
            LDQS VKRGVLV+LGL  FGGVI RR HPASR+EYDYRVILH  DEST SMKMPLES S DEDAA+GAWVLLEV+P+EGSGRRKRVTTP VRLTELA
Sbjct:   17 LDQSIVKRGVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLLEVNPKEGSGRRKRVTTPTVRLTELA 113
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BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5LD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD01_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.160e-45
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVTTPHVRLTELA 291
            AL+QS VKRG LV+LGLG FGGVI RR HP SR+E DYRVILH  EST SMKMPLESYS DEDAA+GAWVLLEVDP+E SGRR+RVTTP+VRLT LA
Sbjct:   16 ALNQSIVKRGSLVQLGLGWFGGVISRRSHPGSRQENDYRVILHCTESTRSMKMPLESYSTDEDAAIGAWVLLEVDPKERSGRRRRVTTPNVRLTGLA 112
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BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5K105_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K105_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.810e-33
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   85 HPASRREYDYRVILHSDESTH--SMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVTTPHVRLTELA 291
            HPASR+EYDYRVILH DEST   SMKMPLESYS DED A+GAWVLLEVDP+EGS RRKRVTTP+VRLTELA
Sbjct:   22 HPASRQEYDYRVILHCDESTRKFSMKMPLESYSTDEDVAIGAWVLLEVDPKEGSRRRKRVTTPNVRLTELA 92
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BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.920e-32
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLEVDPEE 234
            ALDQS VKRGVLV+LGLG FGGVI RR HPASR EYDYRV+LHSD ST SMK+PLESYS DEDA VG+WVLLEV+ EE
Sbjct: 1895 ALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLEVEQEE 1972
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BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.820e-19
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVT 261
            AL +  ++RGVLV LG+G FGG+I ++    +R  YDY V L  D+ST  MK+PL+ YS D DAAVG+WVLLE     G  RR  VT
Sbjct:   52 ALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLESVSRSGRVRRTNVT 138
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.050e-19
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVTTPHVRLTE 285
            ALD+S ++ GVLV LG+G FGG+II++     R  YDY V L  D ST +MK+PL++YS D DAAVG+WVLLE        R  RV TP+V L +
Sbjct:   45 ALDRSLLQLGVLVRLGMGWFGGLIIQQS--PQRHLYDYCVQLEVDHSTRNMKLPLDTYSGDPDAAVGSWVLLE-----SVSRAGRVRTPNVTLVD 132
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5JB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB97_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.510e-19
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVT 261
            ALD+   +RGVLV LG+G FGG+II++    +R  YDY V L  D+ST  MK+ L+ Y+ D DAAVG+WVLLE     G  RR +VT
Sbjct:   51 ALDRLLFRRGVLVRLGMGWFGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLLLDEYTGDPDAAVGSWVLLESVSRSGRVRRTKVT 137
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.850e-19
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLE---VDPEEGSG 243
            ALD S ++RGVLV LG+G FGGVI R+    +R  YDY + L  D+ST SMK+PLE Y  D DA VG+W+LLE   V+  +G G
Sbjct:   25 ALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVDGGG 108
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5JNI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.580e-18
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVT 261
            ALD+  ++RGVLV LG+G FGG+II++    +R  YDY V L  D+ST  MK+PL+ Y+ D DAAVG+WVLLE     G  RR  VT
Sbjct:  986 ALDKLLLRRGVLVRLGMGWFGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLPLDKYTGDLDAAVGSWVLLESVSRSGRVRRTNVT 1072
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Match: A0A6H5KMY4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.760e-18
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 ALDQSKVKRGVLVELGLG*FGGVIIRRCHPASRREYDYRVILHSDESTHSMKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVT 261
            ALD+  ++RGVLV LG+G FGG+I ++    +R  YD  V L  D+ST  MK+PL+ YS D DAAVG+WVLLE     G  RR  VT
Sbjct:  139 ALDRLLLRRGVLVRLGMGGFGGLITQQSQKDTRHLYDCCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLESISRSGRVRRTNVT 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12329.1989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAW0_9PHAE1.410e-4683.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD01_9PHAE1.160e-4579.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K105_9PHAE2.810e-3384.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE6.920e-3280.77Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA94_9PHAE1.820e-1951.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHD5_9PHAE2.050e-1951.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB97_9PHAE2.510e-1951.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW4_9PHAE2.850e-1953.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNI4_9PHAE1.580e-1852.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMY4_9PHAE1.760e-1851.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12329contigH-canaliculatus_F_contig12329:2512..2808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size297
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.2497969-CDS-H-canaliculatus_F_contig12329:2511..26581622928949.2497969-CDS-H-canaliculatus_F_contig12329:2511..2658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12329 2512..2658 -
1696845625.6533985-CDS-H-canaliculatus_F_contig12329:2511..26581696845625.6533985-CDS-H-canaliculatus_F_contig12329:2511..2658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12329 2512..2658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.2658918-UTR-H-canaliculatus_F_contig12329:2658..28081622928949.2658918-UTR-H-canaliculatus_F_contig12329:2658..2808Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12329 2659..2808 -
1696845625.6637526-UTR-H-canaliculatus_F_contig12329:2658..28081696845625.6637526-UTR-H-canaliculatus_F_contig12329:2658..2808Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12329 2659..2808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12329.1989.1prot_H-canaliculatus_F_contig12329.1989.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12329 2512..2658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12329.1989.1

>prot_H-canaliculatus_F_contig12329.1989.1 ID=prot_H-canaliculatus_F_contig12329.1989.1|Name=mRNA_H-canaliculatus_F_contig12329.1989.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=49bp
MKMPLESYSADEDAAVGAWVLLEVDPEEGSGRRKRVTTPHVRLTELAA*
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mRNA from alignment at H-canaliculatus_F_contig12329:2512..2808-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12329.1989.1 ID=mRNA_H-canaliculatus_F_contig12329.1989.1|Name=mRNA_H-canaliculatus_F_contig12329.1989.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12329:2512..2808- (Hapterophycus canaliculatus Oshoro5f female)
GCCCTCGATCAGTCAAAAGTGAAGCGTGGGGTGCTCGTTGAACTGGGGTT
GGGTTGATTTGGTGGGGTAATTATTCGCAGATGTCACCCCGCTTCGCGAC
GGGAGTATGACTACCGCGTCATCTTGCACTCTGACGAAAGCACGCATAGC
ATGAAGATGCCGTTGGAGTCGTACAGCGCGGACGAAGACGCCGCAGTTGG
GGCGTGGGTTCTCCTAGAGGTAGACCCAGAGGAGGGGAGTGGGAGGCGGA
AACGGGTGACAACCCCTCATGTTCGCCTTACGGAGCTTGCAGCATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12329:2512..2808-

>mRNA_H-canaliculatus_F_contig12329.1989.1 ID=mRNA_H-canaliculatus_F_contig12329.1989.1|Name=mRNA_H-canaliculatus_F_contig12329.1989.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12329:2512..2808- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGATGCCGTTGGAGTCGTACAGCGCGGACGAAGACGCCGCAGTTGG
GGCGTGGGTTCTCCTAGAGGTAGACCCAGAGGAGGGGAGTGGGAGGCGGA
AACGGGTGACAACCCCTCATGTTCGCCTTACGGAGCTTGCAGCATAAATG
AAGATGCCGTTGGAGTCGTACAGCGCGGACGAAGACGCCGCAGTTGGGGC
GTGGGTTCTCCTAGAGGTAGACCCAGAGGAGGGGAGTGGGAGGCGGAAAC
GGGTGACAACCCCTCATGTTCGCCTTACGGAGCTTGCAGCATAA
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