mRNA_H-canaliculatus_F_contig12323.1987.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12323.1987.1
Unique NamemRNA_H-canaliculatus_F_contig12323.1987.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12323.1987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12323contigH-canaliculatus_F_contig12323:1897..3685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12323.1987.1prot_H-canaliculatus_F_contig12323.1987.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12323 1899..3685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.9647844-CDS-H-canaliculatus_F_contig12323:1898..20291622928948.9647844-CDS-H-canaliculatus_F_contig12323:1898..2029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 1899..2029 -
1696845625.5496926-CDS-H-canaliculatus_F_contig12323:1898..20291696845625.5496926-CDS-H-canaliculatus_F_contig12323:1898..2029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 1899..2029 -
1622928948.9764085-CDS-H-canaliculatus_F_contig12323:2384..25151622928948.9764085-CDS-H-canaliculatus_F_contig12323:2384..2515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 2385..2515 -
1696845625.5605307-CDS-H-canaliculatus_F_contig12323:2384..25151696845625.5605307-CDS-H-canaliculatus_F_contig12323:2384..2515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 2385..2515 -
1622928948.9912646-CDS-H-canaliculatus_F_contig12323:3599..36851622928948.9912646-CDS-H-canaliculatus_F_contig12323:3599..3685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 3600..3685 -
1696845625.5693488-CDS-H-canaliculatus_F_contig12323:3599..36851696845625.5693488-CDS-H-canaliculatus_F_contig12323:3599..3685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12323 3600..3685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12323.1987.1

>prot_H-canaliculatus_F_contig12323.1987.1 ID=prot_H-canaliculatus_F_contig12323.1987.1|Name=mRNA_H-canaliculatus_F_contig12323.1987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
VGPVTRDDTQGIDKPASRAQAERLQMESSARDQLREHGLSRLARTWSGLD
HEAAGSSADTYVYLWTEADARDGEELPSCRAAGAVATRAAAEGGQGDTGS
WLLLARVEPVENGRVK
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mRNA from alignment at H-canaliculatus_F_contig12323:1897..3685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12323.1987.1 ID=mRNA_H-canaliculatus_F_contig12323.1987.1|Name=mRNA_H-canaliculatus_F_contig12323.1987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1789bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12323:1897..3685- (Hapterophycus canaliculatus Oshoro5f female)
GTCGGACCTGTGACACGTGACGACACTCAAGGAATAGATAAACCCGCTTC
ACGTGCGCAGGCAGAGCGCCTGCAGATGGAGTCAAGGTGAGCTGGTAGAC
GGTAGAGAGAAGCTCCTCTCCGAACCAGCGGCACCGACCAGTGCGTACAA
CGCGGCCCGAAGGCAAGGTTTGATGTCTACACCGCACACCGCACCGGGTG
CCACCCTTGAAAAGCTTGGTTCATAAAAAAAAGTTTTTTTGGTGTCTCTT
CCCCCTCCACTCCCAACCCATCCTGCAACACCTTGGAGAAAGATGAGACC
ACCCACACCAGAAACCGCTGGACGTCGATCTCCCTCAGAGGTCAGTCAGT
GTCTCATGGGCAGCGGCGTTGCCTCCGCTGCCTCTCTGTTGGGACTCGCG
ACTCTTGCGTGCATGCTTCGAGTATGTGAAGACCAGCACGTATTGCTTGT
ACTCTGCTTACCACCGAAAATGTGATGCGTGCCCCAAGCTCTCCTTCTCT
GTATTTCTGTAGGTCACCGCACAGCCGCACCAAGTGGTTTGTCCCTCCTA
CTTGAACATGATTTCTTCCGATCGGCCTGACTCCTCTTCCCGACGTGTTG
CATCTAGCCTCAGCTACCGCTGCTTGCAAAACAGGAGCATTAGACTAGTT
CGTAGTCATCCGGATGGCGTACAGTATGAGTAGGCTCTTCTTCGCTTCTT
TTCGCAGGCCCCGCGTGGTTACAGCAGCAGTATTTGCAAACTCCGTCCTT
TCGATGATGACGGATGACCATGCGGTTTGCGTGCCTAAATCGGATTTTGA
ATTTTTCACCGGAATTTGGCGAGCGCACCCCTTTTTATTTTTGAAGTTGC
CGTTGCTGTGCTCCGTGCCGCATCGATCTTCCGTCAAGACACCGACGCGC
TGCAGTGGTGGTACTCAGACGACCCAGCAGAGTCCCCCGGCCATGGCGAG
ACTTATTGTCGGCGTAATGGTTCAGTCGAAGTGCTTTCATGCGTGTACGC
GGGGATGGATTGGAAGAAGGCGAGTCCTATGTACTCAGAAAAACATCACA
TCGGGCCGGCGTGCAGCACACAACTCATACAAGTAAGATCTGCTGCGTGT
CACGACAACTCACCACCCGCCACGGGTGACTGCGTCCTCTCCGATCCTTG
ACCACCATCGCTGGTCGTAGTGCCCGCGACCAGCTGAGAGAGCACGGCCT
GTCGAGACTTGCACGGACGTGGAGCGGGCTCGACCATGAAGCTGCAGGCA
GCTCCGCGGACACATATGTATACCTTTGGACGGAGGCTGACGCTCGAGAC
GGTACGCAGGCAACGTGTCTTAGCAGCAGTAAGGATATCAACAGCAGCAG
CAGCAGCAGCAGAGTTTCGACCAGTGTTGCCTGGTTGCATCGGTACCTTG
CATTGCTGTAAGGGGCTCGTATGCGCACTGGTTTTTATCGTGGGTGCTCG
GACTGTGGCCAAGAAGTCGTCTGGTCTTGTTCAAACATGTTTCTCGAGGA
GGGAGGGTCTTCGGCAGACTGTCAGGGCCCATCCCCCCGATCCTCCTGTT
CATGAACCCCCCATCCCCCCGTCTCATCCATCAACCATCAACTATCAACC
CGTTGGCGACGACTATCATTCCCTCCTCTCTCACCGGCCTCTCTCGGGCA
CGGCAGGAGAAGAGCTCCCTTCTTGCAGAGCGGCAGGCGCGGTGGCGACA
AGAGCAGCAGCAGAGGGTGGCCAGGGCGATACAGGATCCTGGCTCTTGCT
CGCCAGAGTAGAGCCGGTCGAGAATGGCCGGGTCAAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12323:1897..3685-

>mRNA_H-canaliculatus_F_contig12323.1987.1 ID=mRNA_H-canaliculatus_F_contig12323.1987.1|Name=mRNA_H-canaliculatus_F_contig12323.1987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12323:1897..3685- (Hapterophycus canaliculatus Oshoro5f female)
GTCGGACCTGTGACACGTGACGACACTCAAGGAATAGATAAACCCGCTTC
ACGTGCGCAGGCAGAGCGCCTGCAGATGGAGTCAAGGTCGGACCTGTGAC
ACGTGACGACACTCAAGGAATAGATAAACCCGCTTCACGTGCGCAGGCAG
AGCGCCTGCAGATGGAGTCAAGTGCCCGCGACCAGCTGAGAGAGCACGGC
CTGTCGAGACTTGCACGGACGTGGAGCGGGCTCGACCATGAAGCTGCAGG
CAGCTCCGCGGACACATATGTATACCTTTGGACGGAGGCTGACGCTCGAG
ACGTGCCCGCGACCAGCTGAGAGAGCACGGCCTGTCGAGACTTGCACGGA
CGTGGAGCGGGCTCGACCATGAAGCTGCAGGCAGCTCCGCGGACACATAT
GTATACCTTTGGACGGAGGCTGACGCTCGAGACGGAGAAGAGCTCCCTTC
TTGCAGAGCGGCAGGCGCGGTGGCGACAAGAGCAGCAGCAGAGGGTGGCC
AGGGCGATACAGGATCCTGGCTCTTGCTCGCCAGAGTAGAGCCGGTCGAG
AATGGCCGGGTCAAGGAGAAGAGCTCCCTTCTTGCAGAGCGGCAGGCGCG
GTGGCGACAAGAGCAGCAGCAGAGGGTGGCCAGGGCGATACAGGATCCTG
GCTCTTGCTCGCCAGAGTAGAGCCGGTCGAGAATGGCCGGGTCAAG
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