mRNA_H-canaliculatus_F_contig1232.1985.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1232.1985.1
Unique NamemRNA_H-canaliculatus_F_contig1232.1985.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: D7FHU3_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 2.030e-63
Identity = 111/162 (68.52%), Postives = 127/162 (78.40%), Query Frame = 1 
Query:   61 TEKEGKTAEVSEATMKEVSASVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLALIARMGEESPSLRISEDKKQIGRTEPMTEEAGNERMGRTVQTKGYAKDSKIKIEDVEKLFKETGEAKYVKICRASAGTKLTS 546
            +E +GK AE +  T      + L+MLEFYFGDSNFGWDRF+Q KAGKMGENL+DISVLMTFNKLKNI+ K  L+ E+G ALIARMGE SPSLR+SEDKKQIGR   MTEEAG ER+ RTVQTKGY K+S IKIEDVEKLF + G+A YVKIC+A      TS
Sbjct:   41 SEDKGKEAETAAET------AALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKLRTS 196
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: D7FZL9_ECTSI (XRRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL9_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.860e-60
Identity = 115/161 (71.43%), Postives = 135/161 (83.85%), Query Frame = 1 
Query:  544 SIFVEFATKEAADKAVGLSEQFFHEGEPISVRMAKRDGERGPEAAGEAEPAAPEPVVYEAGKIIHIAAIPESGVSRESLKDAVKTYGTAMYVDFSFGAREAWIRMENPSEAAAVVTAAKD-DGLQLAAEVEEKGTVSLVEGDDEKSYYERMEKARADRNNR 1023
            SIFVEF  KEAA+KA+  SE +F+EGEPI+VR A+ D ER   AA    PA PEP+VYEAGKIIHIA IPESGVSRESLK+AV+++GTA+YVDFSFG REAWIRM+NP+EAAA V+ AK+ DGL LAAEVE+KGTVSLVEG +EK YY+RMEK RA+R NR
Sbjct:  108 SIFVEFDKKEAAEKAIARSEDYFYEGEPIAVRPARSDEER---AAAHTAPA-PEPLVYEAGKIIHIAGIPESGVSRESLKNAVESFGTALYVDFSFGGREAWIRMQNPAEAAATVSGAKETDGLTLAAEVEDKGTVSLVEGAEEKDYYDRMEKMRAERLNR 264
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: A0A6H5JNF3_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.850e-20
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:  103 MKEVSASVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLALIA 309
            +KE   + L+MLEFYFGDSNFGWDRF+Q KAGKMGE L+DISVLMTFNKLKNI+ K  L+ E+  AL++
Sbjct:  222 VKEAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGEKLMDISVLMTFNKLKNIVKKADLSPEEAQALVS 290
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: A0A482RX93_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX93_9ARCH)

HSP 1 Score: 92.8 bits (229), Expect = 1.740e-17
Identity = 96/340 (28.24%), Postives = 165/340 (48.53%), Query Frame = 1 
Query:  121 SVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLALIARMGEESPSLRISEDKKQIGRTEPMTEEAGNERMGRTVQTKGYAKDSK-IKIEDVEKLFKETGEAKYVKIC----RASAGTKLT-SIFVEFATKEAADKAVGLSEQF------FHEGEPISV---------RMAKRDGERGPEAA------------GEAEPAAPEPVVYEAGKIIHIAAIPESGVSRESLKDAVKTYGTAMYVDFSFGAREAWIRMENPSEAAAVVTAAKDDGLQLAAEVEEKGTVSLVEGDDEKSYYERME---KARAD-RNNRSG 1029
            ++ + +EFYF DSN+  D FL+A A    +  + ISVL+TFN+LKN      LTT+  +A +A+  E S ++ +S +K ++ R EP+ E   +E   RT+  KGY  D+  + IE + + +   G+  YVK+     R +   K   S+ VEFA+ E  DKAV  S++       F + + + V         + A  + ++G                 E +        YE G ++ +  +P +    E LK+ ++      +VD++ GA +A++R  +   A  V  A     ++     E +G   ++EG+ EK+Y+ + +   KAR + RNN  G
Sbjct:    7 AIRKQVEFYFSDSNYRKDTFLKAAAESDPDGFVAISVLLTFNRLKN------LTTD--VAEVAKAVESSDAVVLSANKDKVKRAEPLPET--DESASRTLYIKGYPVDNADVTIESIAEQWSPYGKVLYVKMRTFRDRDTNARKFKGSVCVEFASTEGVDKAVAASKEDGKIILGFEDKKFVQVSTFAEWYNSKKAYLESKKGKAQKRXXXXXXXXXXDNEGDKEETREFKYENGLVVKLTDLPATHNGVE-LKELLRQTADVRFVDYTNGASDAFVRCGDAGAARKVAEAVNKGEVKFG---EAEGKAEVLEGEGEKAYWVKNDADFKARRESRNNNKG 332
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: A0A1X7UCM2_AMPQE (Uncharacterized protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UCM2_AMPQE)

HSP 1 Score: 91.7 bits (226), Expect = 8.690e-17
Identity = 84/339 (24.78%), Postives = 164/339 (48.38%), Query Frame = 1 
Query:   79 TAEVSEATMKEVSASVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLALIARMGEESPSLRISEDKKQIGR--TEP------MTEEAGNERMGRTVQTKGYAKDSKIKIEDVEKLFKETGEAKYVKICRASAGTKLTSIFVEFATKEAADKAVGLSEQFFHEGEPISVR-----MAKRDGERGPEAA--------GEAEPAAPEP----VVYEAGKIIHIAAIPESGVSRESLKDAVKTYGTAMYVDFSFGAREAWIRMENPSEAAAVVTAAKDDGL--QLAAEVEEKGTVSLVEGDDEKSYYERMEKARADR 1014
            +A  S +   ++   +++ +EFYFGD N   D+FLQ K  +  +  +++SVL+TF++LK       L+T+  L   A     S  L +SED  ++ R  ++P      ++ E   +   RT+  KG+ KDS +  +D++      GE + +++ +        SIFVE+   ++  K +    +  ++ E ++V        ++D ER  + A        G A   + +      + + G I+H     + G +RE+LK+  + + T  +VDF  G  E +IR +    A      A  +    ++    +   T+ ++EG++E +Y+E+M++ +A+R
Sbjct:   11 SASTSSSEPDDLEKKIIRQIEFYFGDRNLSRDKFLQNKIKENEDGWVELSVLLTFSRLK------ALSTDCSLIAGALRKSTSGLLEVSEDGLKVKRKSSDPVPTLSLLSPEDRKDMSNRTLYMKGFPKDSTL--DDIQDFLLPFGETEMIRMKKDLDKQFKGSIFVEYKLVDSISKVLEKKAELKYKDELLTVETKQDYFKRKDAERKEKKAQSRVESSSGSATETSKDTNGTTFIRQEGAILHFTGCGD-GTTRETLKEYFRQFATVAWVDFQKGDTEGYIRFDEDGGAKKAYDGAMANVPTGEVCKICDSDVTLKVLEGEEESAYWEKMKEDQANR 340
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: UPI001E1D65AA (lupus La protein homolog B-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D65AA)

HSP 1 Score: 89.0 bits (219), Expect = 5.920e-16
Identity = 94/339 (27.73%), Postives = 153/339 (45.13%), Query Frame = 1 
Query:  115 SASVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLALIARMGEESPSLRISEDKKQIGRTEPMTEEAGNERMGRTVQTKGY-AKDSKIKIEDVEKLFKETGEAKYVKICRASA--GTK--LTSIFVEFATKEAADKAVGLS-------------------------EQFFHEGEPISVRMAKR--------------DGERGPEAAGEAEPAAPEPVVYE--AGKIIHIAAIPESGVSRESLKDAVKTYGTAMYVDFSFGAREAWIRMENPSEAAAVVTAAKDDGLQLAAEVEEKGTVSLVEGDDEKSYYERM 993
            +  + + +E+YF DSN   DRFL+AK  +     IDI VL+TFNKLK +      T E     +AR    S  L ++ED  ++ RT P+ +   +E   R+V  KG+ A   +  + DVE LF   G+   V++ R S   GT+    S+FVE  T EAA++ V  S                         E +F +    S    K+              +G+ G +   + +  A + V  E   G I+    + E+  SRE LK+ V+ +G   ++DF  GA +  IR      A+  V       +++  +V +    S++EG+ E +Y+ ++
Sbjct:   15 ATGIQRQVEYYFSDSNLPRDRFLRAKMDENDGGWIDIDVLLTFNKLKEL----KATKESFCEAVAR----STFLAVNEDGTRVRRTTPVPD--SDEWRARSVYAKGWIATQPEPPVGDVEALFAPYGKVVSVRMRRWSGEDGTRHFKGSVFVELDTSEAAERVVADSHTIKVKGSEDDSCELEDKELIVMNVESYFEKKRIESRERTKKFKERKAALKAAERGNGDHGKDGPVDRQNGAAQGVKREFVKGLILRFTGVGET-TSREDLKEVVEPHGAIAWIDFERGAVDGHIRFSAEGAASKTVAELSQKSIEICGKVPQ---YSVLEGEAESAYWTKV 339
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: A0A813CCZ0_9DINO (La protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CCZ0_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 2.470e-15
Identity = 90/325 (27.69%), Postives = 162/325 (49.85%), Query Frame = 1 
Query:  118 ASVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLALIARMGEESPSLRISEDKKQIGRTEPMTEEAGNERMGRTVQTKGYAKDSKIKIEDVEKLFKETGEAKYVKICRASAGTKLT--SIFVEFATKEAADKAV--GLSEQFFHEGEPISVRMAKRDGERGPEAAGEAE----PAAPEPVVYEAGKIIHIAAIPESGVSRESLKDAVKTYGTAMYVDFSFGAREAWIRMENPSEAAAVVTA-AKDDGLQLAA-------------EVEEKG----TVSLVEGDDEKSYYERMEKARADR 1014
            A++ + +E+YF D+NF  D+ L+  A    +  +D+S L+TFN+LK       L+++   A++A   E+S  +++S DKK++ RT+P+     ++   RTV  KG+  D+K+  +D+ +          V + R     K    S+FVEFA KE ADKAV  G SE+          ++ KR      + A  A+    PA    ++   G I+ +  + ++  S  ++++A +      + +       A +R   P +AA V+ A AK    + AA             ++ + G    T +L+EGD+E++Y+E++  A+A+R
Sbjct:    9 AAIKKQVEYYFNDANFRRDKHLRGIADADPQGYVDVSALLTFNRLK------ALSSDP--AVVAAALEDSDIVQLSADKKKLRRTKPLP--LSDDSADRTVYMKGFPVDAKL--DDLIEFANGIAPTARVSMRRFKDEVKTFKGSVFVEFAGKEGADKAVAAGASEEGLTFAGTKLEKVLKRGDYLAEKKAARAKVTETPAFKRELIP--GVIVKLEGL-DATASWSAIQEAARALAGVRFTEIDSATNTAHLRCLTPDDAAKVLAAVAKTAEAEKAAAGSADTTTPEGCLDIAKLGGKVPTATLLEGDEERAYWEKVWAAQAER 318
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: UPI001E1D2BBE (la-related protein 7 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1D2BBE)

HSP 1 Score: 86.3 bits (212), Expect = 4.610e-15
Identity = 88/337 (26.11%), Postives = 157/337 (46.59%), Query Frame = 1 
Query:   61 TEKEGKTAEVSEATMKEVSASVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLALIARMGEESPSLRISEDKKQIGRTEPMTEEAGNERMGRTVQTKGYAKDSKIKIEDVEKLFKETGEAKYVKICR-ASAGTKLTSIFVEFATKEAADKAVGLSEQFFHEG-------------------------EPISVRMAKRDGERGPEAAGEAEPAAPEPVVYEAGKIIHIAAIPESGVSRESLKDAVKTYGTAMYVDFSFGAREAWIRMENPSEAAAVVTAAKDDGLQLAAEVEEKGTVSLVEGDDEKSYYERM 993
            TEK+    +   + +++V   +++ ++F+FGD+N   DRFL+ +  K  +  +DIS+L++FNK+K +       T DG  LIAR  + S  + +  +  +I R  P+ E   +E   RTV  +   K+  +    +E++F + G   Y+ I    S G      FVEF TKE A KA+  +E+    G                         E I +R+   + E  P+ A    P       + +G I+ I +  ES   R+ ++D +      +YVD   G  E  +R   P++A AV++A  +   +   ++E      ++ GD E+ Y++++
Sbjct:   17 TEKKKDVEKKKRSRVRQVLTDIVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKL-------TTDG-KLIARALKSSAVVELDLEGTRIRRKNPLGERPKDEDE-RTVYVELLPKN--VNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIESTEEEKDTGDKDGSLSKAKRKXXXXXXXXXXMGEEVIPLRVLSNNEECRPQEANAMGPQ------FVSGVIVKILSA-ESLPGRKLVRDTLAAISEVVYVDLLEGDTECHVRFRTPADAQAVISAYPEISKKHNWKLE------ILSGDHEQRYWQKI 329
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: A0A6J1BRF4_MOMCH (la protein 1 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1BRF4_MOMCH)

HSP 1 Score: 83.6 bits (205), Expect = 6.100e-14
Identity = 59/199 (29.65%), Postives = 109/199 (54.77%), Query Frame = 1 
Query:  106 KEVSASVLQMLEFYFGDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGL----TTEDGLALIARMGEESPSLRISEDKKQIGRTEPMT--EEAGNERMGRTVQTKGYAKDSKIKIEDVEKLFKETGEAKYVKICRASAGTKLT--SIFVEFATKEAADKAVGLSEQFFHEGEPISVRMAKR-DGERGPEA 675
            +E +  VL+ +EFYF DSN   D FL+    +  + ++++S++ +F +++N +  G +     +ED +  +A     SP++++SED K+IGRT  ++  EE   +   RT+    +  +  +K+EDVE  F +  +   V++ R  A  ++   +  VEF+++E A+KA  L E   + G  + ++  K  D ER  EA
Sbjct:    8 QETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAASPF--EYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKA--LKESLLYAGAKLELKPKKDFDEERAKEA 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Match: A0A6H5JSJ4_9PHAE (XRRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.250e-14
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:  856 MENPSEAAAVVTAAKD-DGLQLAAEVEEKGTVSLVEGDDEKSYYERMEKARADRNNR 1023
            M+NP+EAAA V+ AK+ DGL LAAEVEEKGTVSL+EG DEK YYERMEK RA+R NR
Sbjct:    1 MQNPAEAAATVSGAKETDGLTLAAEVEEKGTVSLLEGADEKDYYERMEKMRAERLNR 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1232.1985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHU3_ECTSI2.030e-6368.52HTH La-type RNA-binding domain-containing protein ... [more]
D7FZL9_ECTSI1.860e-6071.43XRRM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNF3_9PHAE1.850e-2068.12HTH La-type RNA-binding domain-containing protein ... [more]
A0A482RX93_9ARCH1.740e-1728.24Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A1X7UCM2_AMPQE8.690e-1724.78Uncharacterized protein n=3 Tax=Amphimedon queensl... [more]
UPI001E1D65AA5.920e-1627.73lupus La protein homolog B-like n=1 Tax=Mercenaria... [more]
A0A813CCZ0_9DINO2.470e-1527.69La protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]
UPI001E1D2BBE4.610e-1526.11la-related protein 7 n=1 Tax=Echinops telfairi Tax... [more]
A0A6J1BRF4_MOMCH6.100e-1429.65la protein 1 n=1 Tax=Momordica charantia TaxID=367... [more]
A0A6H5JSJ4_9PHAE7.250e-1475.44XRRM domain-containing protein n=1 Tax=Ectocarpus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1232contigH-canaliculatus_F_contig1232:20448..28705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue6.9e-52
Seed eggNOG ortholog2880.D7FHU3
KEGG koko:K11090,ko:K14837,ko:K15191
KEGG Pathwayko05322,map05322
GOsGO:0000049,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006353,GO:0006383,GO:0006386,GO:0006396,GO:0006399,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008033,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0018130,GO:0019438,GO:0031123,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0033036,GO:0033592,GO:0034337,GO:0034414,GO:0034470,GO:0034471,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042779,GO:0042780,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0061818,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:0097159,GO:0097617,GO:0097659,GO:0099116,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1905267
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03021
Hectar predicted targeting categoryother localisation
Exons11
Model size1113
Cds size1113
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.7247787-CDS-H-canaliculatus_F_contig1232:20447..204771622928948.7247787-CDS-H-canaliculatus_F_contig1232:20447..20477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 20448..20477 +
1696845625.4425561-CDS-H-canaliculatus_F_contig1232:20447..204771696845625.4425561-CDS-H-canaliculatus_F_contig1232:20447..20477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 20448..20477 +
1622928948.7443788-CDS-H-canaliculatus_F_contig1232:21212..213741622928948.7443788-CDS-H-canaliculatus_F_contig1232:21212..21374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 21213..21374 +
1696845625.4535477-CDS-H-canaliculatus_F_contig1232:21212..213741696845625.4535477-CDS-H-canaliculatus_F_contig1232:21212..21374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 21213..21374 +
1622928948.7761576-CDS-H-canaliculatus_F_contig1232:21719..218301622928948.7761576-CDS-H-canaliculatus_F_contig1232:21719..21830Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 21720..21830 +
1696845625.4622533-CDS-H-canaliculatus_F_contig1232:21719..218301696845625.4622533-CDS-H-canaliculatus_F_contig1232:21719..21830Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 21720..21830 +
1622928948.7917573-CDS-H-canaliculatus_F_contig1232:22317..224371622928948.7917573-CDS-H-canaliculatus_F_contig1232:22317..22437Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 22318..22437 +
1696845625.4707296-CDS-H-canaliculatus_F_contig1232:22317..224371696845625.4707296-CDS-H-canaliculatus_F_contig1232:22317..22437Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 22318..22437 +
1622928948.8101075-CDS-H-canaliculatus_F_contig1232:23646..237641622928948.8101075-CDS-H-canaliculatus_F_contig1232:23646..23764Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 23647..23764 +
1696845625.4809523-CDS-H-canaliculatus_F_contig1232:23646..237641696845625.4809523-CDS-H-canaliculatus_F_contig1232:23646..23764Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 23647..23764 +
1622928948.8254251-CDS-H-canaliculatus_F_contig1232:24123..242151622928948.8254251-CDS-H-canaliculatus_F_contig1232:24123..24215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 24124..24215 +
1696845625.4902234-CDS-H-canaliculatus_F_contig1232:24123..242151696845625.4902234-CDS-H-canaliculatus_F_contig1232:24123..24215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 24124..24215 +
1622928948.839486-CDS-H-canaliculatus_F_contig1232:25072..251301622928948.839486-CDS-H-canaliculatus_F_contig1232:25072..25130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 25073..25130 +
1696845625.499084-CDS-H-canaliculatus_F_contig1232:25072..251301696845625.499084-CDS-H-canaliculatus_F_contig1232:25072..25130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 25073..25130 +
1622928948.8594623-CDS-H-canaliculatus_F_contig1232:25914..259611622928948.8594623-CDS-H-canaliculatus_F_contig1232:25914..25961Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 25915..25961 +
1696845625.5083075-CDS-H-canaliculatus_F_contig1232:25914..259611696845625.5083075-CDS-H-canaliculatus_F_contig1232:25914..25961Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 25915..25961 +
1622928948.875113-CDS-H-canaliculatus_F_contig1232:26704..268201622928948.875113-CDS-H-canaliculatus_F_contig1232:26704..26820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 26705..26820 +
1696845625.5196877-CDS-H-canaliculatus_F_contig1232:26704..268201696845625.5196877-CDS-H-canaliculatus_F_contig1232:26704..26820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 26705..26820 +
1622928948.8900945-CDS-H-canaliculatus_F_contig1232:27613..277431622928948.8900945-CDS-H-canaliculatus_F_contig1232:27613..27743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 27614..27743 +
1696845625.5292785-CDS-H-canaliculatus_F_contig1232:27613..277431696845625.5292785-CDS-H-canaliculatus_F_contig1232:27613..27743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 27614..27743 +
1622928948.9088757-CDS-H-canaliculatus_F_contig1232:28576..287051622928948.9088757-CDS-H-canaliculatus_F_contig1232:28576..28705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 28577..28705 +
1696845625.5380898-CDS-H-canaliculatus_F_contig1232:28576..287051696845625.5380898-CDS-H-canaliculatus_F_contig1232:28576..28705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1232 28577..28705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1232.1985.1prot_H-canaliculatus_F_contig1232.1985.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1232 20448..28705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1232.1985.1

>prot_H-canaliculatus_F_contig1232.1985.1 ID=prot_H-canaliculatus_F_contig1232.1985.1|Name=mRNA_H-canaliculatus_F_contig1232.1985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=371bp
PVDGAADPAPAAPMEETPSPTEKEGKTAEVSEATMKEVSASVLQMLEFYF
GDSNFGWDRFLQAKAGKMGENLIDISVLMTFNKLKNIILKGGLTTEDGLA
LIARMGEESPSLRISEDKKQIGRTEPMTEEAGNERMGRTVQTKGYAKDSK
IKIEDVEKLFKETGEAKYVKICRASAGTKLTSIFVEFATKEAADKAVGLS
EQFFHEGEPISVRMAKRDGERGPEAAGEAEPAAPEPVVYEAGKIIHIAAI
PESGVSRESLKDAVKTYGTAMYVDFSFGAREAWIRMENPSEAAAVVTAAK
DDGLQLAAEVEEKGTVSLVEGDDEKSYYERMEKARADRNNRSGKRGRGRG
RGRGRGRGGGGGGRGRGRGGN
back to top

mRNA from alignment at H-canaliculatus_F_contig1232:20448..28705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1232.1985.1 ID=mRNA_H-canaliculatus_F_contig1232.1985.1|Name=mRNA_H-canaliculatus_F_contig1232.1985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8258bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1232:20448..28705+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGTTGATGGTGCCGCCGACCCTGCACCTGTGAGTGCTTGATTGCCGAT
CCTGTTCCATCTTACGCTCTCTCTCTCTTTGTGTGTCCATCTCAGACGTC
GGACGTCCACGGGGCTCCGTTCTAATTCTGAAAGTATTCCCGAGCTTGCT
TTGCTCCGCTGGTTCATGCGCTGATTTTCATCGCGTCCTCATGAGAGGTT
CTATCATACATTCGGTGGGGTGAATTCCCCGCTTTCTGGTGTGCATCTGT
CTGCTGATCCTACCTGGTCAACTACTCATCGAAGTCCCCGTCGACATCTG
TTGTAATGTAGGAGATCATGACTTCATCATTCCAAACCTCCGAGGATCTG
CTTGCCCCAAACGTCTTCTCGGTCACTGCCCCCCCCCCCCGACCCCCACC
CCACCCCACATTACCACCACAACAACACCGAAAAGGAAGAAGCGAACGTG
GCAGCAGGATCCACTATCAATAGATACATTGTAGAAATGAAACAGCCCTG
CCGCTGCCGCCACAGCACATGCGCTATGATCACTGTGATGAAGCTCGCGC
TCTCGTTGCCGGTGTATGGTATCGGTATCGGTGCTTGGACGATACGCCCC
GGCGCACGGTGCGGCAAAATATCGCCTCGGCCGGCGGTCGCCAAACCGCG
CCAACTGCCGCTGCTTTGATAATTCCCTCTCTCCTCTCTCGTGGTACCGA
CGTGCTGAAAGCTCGCCGGTGAATAAGTGCCTCGAATGCTCTCCCCGCTC
CCCGGTTGGTCGCAGGCCGCCCCCATGGAGGAAACCCCCTCGCCGACGGA
GAAGGAGGGGAAGACCGCCGAAGTTTCGGAGGCGACGATGAAGGAGGTGT
CGGCTTCCGTTCTCCAGATGCTCGAGTTCTACTTCGGAGACTCCAACTTC
GGCTGGGACCGCTTCTTGCAGGCCAAGGTACGGCGGGGCCCAGGACGCTC
CGGCCTCGGGGTATCTCGGGGTATCTAGCGTCGGGGTGAAAGCATTGTGT
GGCACGGCACTCGACGGTTACGAAAGCCAGGGCGGTGCGGTGAAGCTTTG
AAGGGGCACATGTTTCCACGAGGATTTTGGATTCCGGGCGGTTAGTCCTC
TCACCGGCAGACTTCCCCTGAGCGTATTCGGCGGCTGTGCCCGAGGGTTG
TCTTGTTGTCTTGAGCTCGCGCCGAGATCTGGCGCCCTCTTCTAGACGAG
AGAGCTTTGATTTCGTCGGCCTGGCCGCATTTGTGACGCATGCCTTCCCC
CCCTCCCTCGGCGTTCCTGCAGGCGGGCAAGATGGGCGAGAACCTGATCG
ACATATCCGTGCTCATGACGTTCAACAAGCTCAAGAATATCATCCTTAAG
GGTGGCCTCACCACTGAGGACGGGCTCGCGCTGGTAAGCCAAGTTGTCGT
CATCGCTCTTGTTGCTCCTCCGGCGGCTGCGCATGCTTTGGTTATCGCTG
GGTTTGCGGTCGCGATTGAGGCTGAGACCTGAACATTGAAAAACGATTCC
GGCCTCAACCTTGTTCCCTCGTAGTATGCATGCACCCCTGCACTGGCTGA
CCCGACCAGACAAGAACTGTTCCCTTCCTCTCCTCTCCTATCCTATCCTC
TACGCTCTGCGACGGAAAGGTAATGAAGATGCAATGAAAGGTATCGAGAG
GTGTCCCCGGAGTGCCCTCGCTGCTAGAGCCGCTAGTGTCCCGTTCATGA
CGTCCGTCCGCCCTCTCGCTTCAGCGTGCATACACGTGTTCAAGCACCAA
CCTGTTGTGTTGCACTCTTGCCCACTGGTTGCTGATGTCTTGGCTTTCTT
CGCCCGAAAAACAAAGTAAAGTAAATTAAATTAAATTAAATGAAATCAAA
TCGAATGAAATGAAATCAAGATCGCACGCATGGGAGAGGAGTCGCCCTCT
CTCCGGATCAGCGAGGACAAGAAGCAGATCGGCAGGACGGAGCCCATGAC
GGAGGAGGCCGGCAACGAGCGTATGGGCCGCACGGTGCAGGTACGTATTT
TTGTACTAGACTATCTACGAATGGATGCGATCTTGTAGTCGTATGTCACC
GTACCGTTTTGTGTTGGGGTTAATTTGCACGAAAGGGCTGCGTGGCTTTG
GAAGCCATCCCCTAGGATCTCAACAGCGTGAAGCACGAGATGAAGACTCG
GACTGGTGCGGTGACGGTGACCATGACGATGACGACTAGCAAGTCTCGTC
TGGTGGATGAGTCTCTCTGCAGAAGCACGTTGCCGCCAAACAGCTTTTGA
AGAAACAGCTTTCTAAGGAAATGGTTTGGTTCAAGAATTTTGTGGGATTA
TTATCGCCTGTTGAGCGGCACGTCGTCATTTAAGGGCTTTCAAACAGTCT
ACCTTGATGTGGGCGTCGAAAACAGCTCTTCGAGTCTTCGAAAATACAAG
TCTTCGACAACGCGTTGTTGAGCGTCGGTGGCAAGTCCCACTTCGAAATG
AGCAAAGGGTGTCGTGTGTGATGGGTTCAAACTTCGCCGAGCAAGTACGA
CGGCTGTGACTCGTGGAGAAGTGGTGGCACGAGCTGAAGTGGTTGGCGAC
GAAGACAAACATCAAAGTAGCAAGACCAGATGGGGCATGGGTTCAGCTAT
ACGGAGCCTCTGGAGTGGCATATGTGCTACTGTAGCCGTGTGTGGCGAGA
CAAGTAGACGGTGCACAACGGCAGCAAAATGAGCGATTTAGGGTAGGGAT
CGATAGCCCAACCGAAAATTGTAAAATCCCGAGCCGGATAGCGTGATGGC
ATCAAAGAAGGGCCATATCACAGGGCGATGTGACGTGCTACGGGAGCTGC
TTGTCGTGCTGTTTCGAGGAGTGGCGAGTGCAGCGCATCGGTCTCATGGT
CCACGTCGAAAAGGGGCAGCGGGAGGAATTATCGACTTAAGCAGTGGGGT
GTTTGAGCTCGTTGCAACCAACACGTCCCAACGAAGTCGCAATTTAAATG
TCGCAAATTTCATCAGCTCGCGCCAGGCACATCTTTGCCCACTGGTTCAC
AGCCGTGCCTTTGGAGAATCCTCCTTTCTTCATCAACCCAACCTGTGTTT
TTGCATTCTAAAATAACTCTGCATATGGAGGTCGATGAGTTCACGACTCT
TTTTTCAAATTTTATACGCCGGTTCGGGCAATGTTCATACTCAGAGTATA
TTTTTGCCAATCCCTCTCCACCCCCTCCTCCGGCATTTCTTGGCTACAGA
CGAAGGGGTACGCGAAGGACAGCAAAATCAAGATTGAAGACGTGGAGAAG
CTTTTCAAAGAGACAGGAGAGGCCAAGTACGTCAAGATCTGCAGGGCCAG
CGCGGGCACAAAACTGAGTGAGTTTCCTTTCTGTTCTTTTTTCTTCTTCT
TTGTGTTCTTCTTTGCTCCCTTCTCTCTTTTCTTCTGTCGGTTCTTCTTT
CTTTTCATCTTTCTTTACTTGTTTCTCTTCTTCTCTCTGATCTTTCTTGT
CTGCTTCCCTTCCTTCTTCTCTTTCATCTTTCCTTTGTTCTTTCTATTTC
TTCTTCTCCTCTCTCTTCCTGTTCTTGTCGGCGTTGTCCTCACGGCCATG
GATCCGTGTACTCTCGGCGAGCATGATGTTGCGCTTCTTATCCCTTTTTG
CGTGGATTTTCGCGCCGGTGTTTCACCTTGCTTTGCCCATGTGCGCGGTG
CTTGTGTCTTTGGCGATACCCGACAGCGTCGATCTTCGTGGAGTTCGCCA
CCAAGGAGGCCGCCGATAAGGCCGTGGGGCTTTCCGAGCAGTTCTTCCAC
GAGGGAGAGCCGATCTCCGTGAGTGCATTGCTCTTTGCTTAACTTTTTTT
TTCCCTGCCTTCCCCGTCTGTCGTGGACGTTGGTTTGTCCCGGTCATCTC
TAGGAGGGCTAACCCCCCCCCACCTTCCCTCCGGAATAGCCCGCAATAGC
AATAGCAAAAGCCAAGTGCGTTCGTCTGTGTTCGCCCTTATTATCACGCC
GGATTAAAAGTATTGAAATGATTTGATGTGAAGTGCATGACATGATATGA
TCGGGTGTAACGCTCGGGCGTGCGGGCGTTGGTACTTTGTACTTGTATCC
CGCGGCCACTGCCTTGTTCTGCCTTCGAACTCTCCTACATTGTGCTATCC
TTCCAGCCTTGAGACTCCCCTACAATGGTACCTGTACAACGATTGGATAA
CAGGTCTGGGGCTACATCTACATCTACGTCAAGCACTCGCTTCTCATCTT
TCGAATTTGTTTGAAATAGTTTGGTCAGTTTTGCCAGTGTCGAGAGGCGT
TCCTGAGGCGAAAATAATTCAGGGGTTCGGGCTGGCCCAGAACCGTCGCC
TCGTGCTCACTCTCCTCTGAATGCATGTATCATTTTCGTCCGGGGTACTC
TTGAGCTTTGCCATCCGAGGCAGTCGCCATTAGGCAATCGCGACGGCCTC
CACTAGGATCATTCGTCGTGAGAGAGTGCGTGCCCTTCCGCCGAGCAGCG
TCAACAAGAGGGCAAGGGACGAAACAGGGAACACCCGTCTTGGCCGATTG
CCGTGAAGAAGACGAGAGAGGTATACCCCTTCTTGCCATTTACCCGGAAC
AAAGAGACGAAAAGAGGTATACCCCTCTTTGCCAGTTCCCCTAAACGGGA
AGACCATGCCCGTCCTCCTCTGCAGGTGCGAATGGCCAAGCGTGATGGCG
AACGTGGGCCGGAGGCTGCCGGAGAGGCCGAGCGTGAGTCACCGCTTTTT
CCGCACAGCCGCTGCCCGCGGAGGAGATCGTTTGTGGGCTCTTGCCTTCT
GTCTTGCCTTCTGCCTCCAGTAGGTGGTATGTAGAACAGAGATGGAGACC
GCTGTAGGGGCGGGGAGCCTGTAGGCGCCGAAAAGGGCAAGCGGTAGGGG
CAACACGCCTCCAAGAGAGACTCTGGCAGGCTCCCGTTCTGCGTCGGTGG
AGGTCAGAGGGTAGATTGAAACGTCGGTCGATTTTGAATAGTGTATCACT
GCCGGTCTTCGGCTGTAGTGGGGGAGAAATCTGTGTGCGCGTTTTCGCTG
GTGTGTGGTTGGGGGACCATGTGCAAGCACGGGTTGCTATTGCTGCTGCT
GCTGCCATCCCCGCCCCTGGCCTTCTCTTTTTGCTGCTTTTGGGAAACGC
TGGTTCTCGATCTCAGCCCTTCAGGCACAAACCCTCGTACAGCAACATTC
ACCTCGGCTCATGCGAACGCCAGCCCAGGAGGTTGGAGGACGTCCTTGTT
TTCATCTCGGACCTGACCCTTTCGGCTGTCACGATCCGCCCTCTCTAGCG
TTGGCGTTGATCTGTCGGCCTTCACCCCAACCCGAACCCGAATCCGAACC
CTAAACTTATTTCCCTCTCTCATTTGTGCATCTCGCTGCCATCCCGAGCC
CAGACTCCCTGCCCTCTGTGCACCATGGTGCTGCCCTTATCCCAGTAATC
CGACACGATCTTGTACACTCACAGTCGCTTACCTTTCATGCGGTTTTGGT
GTCGTTCATGAACACAGCTGCCGCGCCGGAGCCTGTGGTGTACGAGGCGG
GGAAGATCATCCACGTGAGTAATCATGCATGATGTGATGTCATGTGATTT
CGTGTGGTTTGATTTGATTTGGTTTGGTTTGGCTCGATTTTATTTGGTTG
AGTCGTCAGTCGTCAGGGTGTTGGTGAGAGATTCGTGCAAGCGGACACCT
CGTCTACTGGCTTGGTCGGGGCAATCGGTAACCTCCATTATTTCCTCGGA
CCGGAGTATTCGTCATTCGTTATTTGTCACAAAGTACTGACGTACCAGGT
ATTCTTTGTCCTGGATTTATTTGTTATTTCCTCCCGGAGGAACGGAAGAC
GAAGGGGTGAAATGCGCGCCAACTCGAGCAGGGTGGTGATTGATCTGAGG
GCAGCATCAGCATCAACAACACTCCAAAATCAACGCCTTGCACTGGGTTT
TATCTCACCAGCAAACAGTCATCCCATCAGCAAGTGCTCGTGATCCTCTC
GCCCCGTGTCCGCCGGCGGCGCTTCACGGTGCTGATGTTATCGTCCTTGC
CTTTTCGGTTGCGTTGATCGCCGGGTAGACGAGAACCGCTTTTCCCACAG
AAAACGCTTCCGATAGTACACCGTGCACCATGCATGAAACGTTGCCTGGA
GTATCGTAAATTATCCAAGCGTCAACGCCAAGGCCCACCGCTCTGGGAGG
CATGTGACAAGTTCAAACATAGTCATGGCATCGAACCGTCGAACGCAAAG
CTGAAGAGAAGCCGCCGTCAAACGTAACCCTCGAACCGTCGAACCCAATT
GACTTAGATTGCTGCTATTCCGGAGTCCGGGGTATCGCGCGAGAGCCTGA
AGGACGCCGTAAAGACGTACGGCACCGCTATGTACGTCGACTTTTCTTTT
GGGGCGCGCGAGGCTTGGATCAGGTGAGTCCGTAGCACCCTAACACCGTC
GCACAGGAGCACGTACACTGTAGCGTCACGGACGTTGCTCGACGATATTT
AGCAAGACGCGAGCCGTCGGCGTCAGTTCAGCGACAGCACGACGTCGAGT
AAATATCACGAGATCACGAGTTCGCTTTGTGAATCCTCCCAAACCACAAC
ATATTTTGTCGAAGAAAATCGAGTTATCGTTTGATGTAGCCCGATACGGG
ATTGGATGTACAAGTATTCGATCGGGAGTACTCGTGTGCGGATTGCTGCT
TTTTCCACCCTGCACTTCGGGCAGAGGCATACAGTTGAGTCCCGCCAGGT
AGGGATAGCGGTGACTCTCACGGGAACCACAGAACGCTGGACGAATAATA
GACACAAAATGAAGACCCCGAAGCTGCAATCGGACGCCAAAAAGACAAAT
GGACAGAACAGCAGTGCACGTCCTCCCCGGGGTACCGTAGATGACACAAG
ATAACACACCCCCTGGACCGATTATCAAAGCTCGGCTACTCCGCAACGAG
TACGATTCCAAAACCAAATGACACGTTTTATGGCAGATCTTGAAGAGATC
TTTCCAACGCCGCCCTTTTTGGGACTTGAGGTTTGAGACTCTGTCCAGGG
GGTGTGTTATTTTCTGTCATATACGGTAGATCAATTTACGCACACGTCGT
CTCACCTCCTGAAAAACTTGGAAGGGGAAGGGAAGGCATGACTCTTTCTC
TCTCTCTTTTCACGCAATTAACCAAACCAATCCGGTCGCACGTTGTTTGA
TTGCCGTCGGGGGCAGAATGGAGAACCCGTCGGAGGCGGCGGCGGTGGTG
ACGGCGGCCAAGGACGACGGGCTGCAGCTGGCAGCGGAGGTGGAGGAGAA
GGGGACGGTTTCGCTCGTGGAAGGGGACGACGAGAAGAGTTACTACGTGA
GCCCCGCCTGCCCTCCTCCCACCCTCATCTTTGCCCTCTCGTTTTTTCAA
GAGAAAGAGTCGACAGCTCCAAAGGAAAACCCTTCTCAGAGACGATGGGC
ACAGCAGCGGCTCAGAGGGTTTGTGTTGAGTTCCTTGCAGGGAGGGTTCG
GTAGGGCGGGAAAGCATGTTGTGCGTGTCCGATGAGATGGGTTGTTGGCG
ATCGATGACATGCATGAGGCGCATTTTGATACCTCGTGTGATGATCGCCC
TCTGGTTTCTGTCCTGCCTCGCCTTTTTTCTGCTCCCTAGCTCACCCGTG
GAATCTTGCCCCTTTTCTTTTTTGCTCTGCCTTTATTTCACGAAGAAATG
TTTCCTTGTTTTGATCGCTTGTTTGCCGTAGATGTGGTTTGTGTTGGTCC
TTCGTTTCTCTTGTCGTTCTCCGCGTGCTGTGCTTACCGTGCTTACCCTG
GATGTCGCCGTCTTGCCTTGTTCTCAACGATTCCGGGTAGCGGTACTGTA
GCAGTGTGCGAGCCAGTTGATTAGTGCGGGCATAAGGCAAATCGCGAAAC
GATGCCCGAAGGCTCTGCTTCGAGGTATCATGTTCGACCCTTGAGAAGGC
CGGTGATGCCAATGCCAACCAGAGCGGAAGTATTGGGTCGGAGTCACAAC
AACTGTGCTCCTGTCGGAAGAAATGGGAGACAAGACCCTCAGTACTTTCA
TCGACAAGTGGACCTTGTGCAACACTGAACAACGCCCGTCAACATCAACA
CCAGTAACACGCGCCCAAGAGCGACCAAAAACAAAAGAGAAAAATGACGA
AACGTCAAAACGACCTCCTGCTTTTCCAGGAGCGCATGGAAAAGGCGAGG
GCCGACAGGAACAACCGCTCCGGCAAGCGAGGGCGCGGCCGAGGCAGGGG
GCGCGGGAGGGGGAGAGGGGGGGGGGGGGGCGGACGTGGTCGCGGCCGCG
GGGGGAAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1232:20448..28705+

>mRNA_H-canaliculatus_F_contig1232.1985.1 ID=mRNA_H-canaliculatus_F_contig1232.1985.1|Name=mRNA_H-canaliculatus_F_contig1232.1985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2226bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1232:20448..28705+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGTTGATGGTGCCGCCGACCCTGCACCTCCCGTTGATGGTGCCGCCGA
CCCTGCACCTGCCGCCCCCATGGAGGAAACCCCCTCGCCGACGGAGAAGG
AGGGGAAGACCGCCGAAGTTTCGGAGGCGACGATGAAGGAGGTGTCGGCT
TCCGTTCTCCAGATGCTCGAGTTCTACTTCGGAGACTCCAACTTCGGCTG
GGACCGCTTCTTGCAGGCCAAGGCCGCCCCCATGGAGGAAACCCCCTCGC
CGACGGAGAAGGAGGGGAAGACCGCCGAAGTTTCGGAGGCGACGATGAAG
GAGGTGTCGGCTTCCGTTCTCCAGATGCTCGAGTTCTACTTCGGAGACTC
CAACTTCGGCTGGGACCGCTTCTTGCAGGCCAAGGCGGGCAAGATGGGCG
AGAACCTGATCGACATATCCGTGCTCATGACGTTCAACAAGCTCAAGAAT
ATCATCCTTAAGGGTGGCCTCACCACTGAGGACGGGCTCGCGCTGGCGGG
CAAGATGGGCGAGAACCTGATCGACATATCCGTGCTCATGACGTTCAACA
AGCTCAAGAATATCATCCTTAAGGGTGGCCTCACCACTGAGGACGGGCTC
GCGCTGATCGCACGCATGGGAGAGGAGTCGCCCTCTCTCCGGATCAGCGA
GGACAAGAAGCAGATCGGCAGGACGGAGCCCATGACGGAGGAGGCCGGCA
ACGAGCGTATGGGCCGCACGGTGCAGATCGCACGCATGGGAGAGGAGTCG
CCCTCTCTCCGGATCAGCGAGGACAAGAAGCAGATCGGCAGGACGGAGCC
CATGACGGAGGAGGCCGGCAACGAGCGTATGGGCCGCACGGTGCAGACGA
AGGGGTACGCGAAGGACAGCAAAATCAAGATTGAAGACGTGGAGAAGCTT
TTCAAAGAGACAGGAGAGGCCAAGTACGTCAAGATCTGCAGGGCCAGCGC
GGGCACAAAACTGAACGAAGGGGTACGCGAAGGACAGCAAAATCAAGATT
GAAGACGTGGAGAAGCTTTTCAAAGAGACAGGAGAGGCCAAGTACGTCAA
GATCTGCAGGGCCAGCGCGGGCACAAAACTGACGTCGATCTTCGTGGAGT
TCGCCACCAAGGAGGCCGCCGATAAGGCCGTGGGGCTTTCCGAGCAGTTC
TTCCACGAGGGAGAGCCGATCTCCCGTCGATCTTCGTGGAGTTCGCCACC
AAGGAGGCCGCCGATAAGGCCGTGGGGCTTTCCGAGCAGTTCTTCCACGA
GGGAGAGCCGATCTCCGTGCGAATGGCCAAGCGTGATGGCGAACGTGGGC
CGGAGGCTGCCGGAGAGGCCGAGCGTGCGAATGGCCAAGCGTGATGGCGA
ACGTGGGCCGGAGGCTGCCGGAGAGGCCGAGCCTGCCGCGCCGGAGCCTG
TGGTGTACGAGGCGGGGAAGATCATCCACCTGCCGCGCCGGAGCCTGTGG
TGTACGAGGCGGGGAAGATCATCCACATTGCTGCTATTCCGGAGTCCGGG
GTATCGCGCGAGAGCCTGAAGGACGCCGTAAAGACGTACGGCACCGCTAT
GTACGTCGACTTTTCTTTTGGGGCGCGCGAGGCTTGGATCAGATTGCTGC
TATTCCGGAGTCCGGGGTATCGCGCGAGAGCCTGAAGGACGCCGTAAAGA
CGTACGGCACCGCTATGTACGTCGACTTTTCTTTTGGGGCGCGCGAGGCT
TGGATCAGAATGGAGAACCCGTCGGAGGCGGCGGCGGTGGTGACGGCGGC
CAAGGACGACGGGCTGCAGCTGGCAGCGGAGGTGGAGGAGAAGGGGACGG
TTTCGCTCGTGGAAGGGGACGACGAGAAGAGTTACTACAATGGAGAACCC
GTCGGAGGCGGCGGCGGTGGTGACGGCGGCCAAGGACGACGGGCTGCAGC
TGGCAGCGGAGGTGGAGGAGAAGGGGACGGTTTCGCTCGTGGAAGGGGAC
GACGAGAAGAGTTACTACGAGCGCATGGAAAAGGCGAGGGCCGACAGGAA
CAACCGCTCCGGCAAGCGAGGGCGCGGCCGAGGCAGGGGGCGCGGGAGGG
GGAGAGGGGGGGGGGGGGGCGGACGTGGTCGCGGCCGCGGGGGGAACGAG
CGCATGGAAAAGGCGAGGGCCGACAGGAACAACCGCTCCGGCAAGCGAGG
GCGCGGCCGAGGCAGGGGGCGCGGGAGGGGGAGAGGGGGGGGGGGGGGCG
GACGTGGTCGCGGCCGCGGGGGGAAC
back to top