mRNA_H-canaliculatus_F_contig10170.198.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10170.198.1
Unique NamemRNA_H-canaliculatus_F_contig10170.198.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10170.198.1 vs. uniprot
Match: D7FP45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP45_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 5.800e-22
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 2 
Query:   35 SSYDDLLASATGLQVKQRTEFRSEADEAFKLTVRQDVRSKAGLKQLGRSILVFDFQPAAAITASNSP 235
            +SYD+LLASAT  +VK +TEFRS ADEA KLTVRQDV  KAG K+LGRS+LVFDFQPA AIT++NSP
Sbjct:    5 ASYDELLASAT--EVKHKTEFRSNADEALKLTVRQDVTRKAGFKKLGRSVLVFDFQPAGAITSTNSP 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10170.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP45_ECTSI5.800e-2274.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10170contigH-canaliculatus_F_contig10170:887..1860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size362
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10170.198.1prot_H-canaliculatus_F_contig10170.198.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10170 887..1832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.6123798-CDS-H-canaliculatus_F_contig10170:886..11591622928646.6123798-CDS-H-canaliculatus_F_contig10170:886..1159Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10170 887..1159 -
1696845511.6575387-CDS-H-canaliculatus_F_contig10170:886..11591696845511.6575387-CDS-H-canaliculatus_F_contig10170:886..1159Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10170 887..1159 -
1622928646.6220572-CDS-H-canaliculatus_F_contig10170:1772..18321622928646.6220572-CDS-H-canaliculatus_F_contig10170:1772..1832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10170 1773..1832 -
1696845511.6667655-CDS-H-canaliculatus_F_contig10170:1772..18321696845511.6667655-CDS-H-canaliculatus_F_contig10170:1772..1832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10170 1773..1832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.6310935-UTR-H-canaliculatus_F_contig10170:1832..18601622928646.6310935-UTR-H-canaliculatus_F_contig10170:1832..1860Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10170 1833..1860 -
1696845511.6750836-UTR-H-canaliculatus_F_contig10170:1832..18601696845511.6750836-UTR-H-canaliculatus_F_contig10170:1832..1860Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10170 1833..1860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10170.198.1

>prot_H-canaliculatus_F_contig10170.198.1 ID=prot_H-canaliculatus_F_contig10170.198.1|Name=mRNA_H-canaliculatus_F_contig10170.198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
MASSYDDLLASATGLQVKQRTEFRSEADEAFKLTVRQDVRSKAGLKQLGR
SILVFDFQPAAAITASNSPSTSQRSTNAGIESNTEATAGSFVRDQAPVDI
AIDAAEPIENA
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mRNA from alignment at H-canaliculatus_F_contig10170:887..1860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10170.198.1 ID=mRNA_H-canaliculatus_F_contig10170.198.1|Name=mRNA_H-canaliculatus_F_contig10170.198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=974bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10170:887..1860- (Hapterophycus canaliculatus Oshoro5f female)
CTGGACTCTGGACGCTCGCTCGAACCACATGGCTTCCTCGTACGATGATC
TCTTGGCGTCGGCGACAGGCTTGCAAGTGAAGCAAAGGGTGAGTGTAAGA
TGATGAGATGGTTCGTATTGCGTGGGCACAACGAGAGGGGGAAAGCATAC
ATCCAAACCCCAACCAATATGTCGCCGTTGTCATGGAAATCAAGATCAAT
TTCGGGGACTCGAATCTCCGCCCGGCGCAACGCACAAAGGGCAGCACGGG
CAGCGTGCACATGGCAGAGAAAAAGGTGACTGGGTGCGGTCGTTGATTTC
TGCAGAGAAAAATCATGGGTCCAGTCCCGAATCGCTTTGTTGGGCGATGG
TTGCTGTGTTTGGTGTGGCTGCTGCTCTCGGCAAGACTCGACGGGAAGTT
TGATCGAAAAATTATCCCGATGTGCCGAGGAACATGAATCCAACGGCAAA
GAGAGTCGTTCTAAAAAGATGCCCTGCGTCGCGGTAGGAAGAGCAGGCAG
CGGCCGTTCACTGATTTGTCTTCTGTCCGGCTGCCGCATCGAGCTGAGCT
TTTGATGTGACAGACAGATCCTGTGCGATCTCGCAGCTCGCGCATCGAGA
GAGACGAGACACTCAGGTGTGTCTGCTGTACTGATGCACGCGTCCAATAT
CCTGACGGCTATCAACTTCTGCTGTCGCGCCCCCTGAACATGCGTTTCAA
GACGGAGTTCAGATCGGAAGCCGACGAAGCTTTCAAGCTCACGGTGCGAC
AGGACGTCAGGAGCAAGGCCGGCCTGAAACAACTAGGCCGGTCCATCCTC
GTTTTCGACTTCCAGCCGGCCGCCGCGATCACGGCCTCGAACAGCCCCAG
CACCTCACAACGGTCAACGAACGCCGGTATCGAAAGTAATACCGAGGCCA
CCGCCGGCAGCTTCGTCAGAGACCAGGCACCGGTTGACATCGCCATCGAT
GCGGCGGAACCGATAGAGAATGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10170:887..1860-

>mRNA_H-canaliculatus_F_contig10170.198.1 ID=mRNA_H-canaliculatus_F_contig10170.198.1|Name=mRNA_H-canaliculatus_F_contig10170.198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10170:887..1860- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTTCCTCGTACGATGATCTCTTGGCGTCGGCGACAGGCTTGCAAGT
GAAGCAAAGGATGGCTTCCTCGTACGATGATCTCTTGGCGTCGGCGACAG
GCTTGCAAGTGAAGCAAAGGACGGAGTTCAGATCGGAAGCCGACGAAGCT
TTCAAGCTCACGGTGCGACAGGACGTCAGGAGCAAGGCCGGCCTGAAACA
ACTAGGCCGGTCCATCCTCGTTTTCGACTTCCAGCCGGCCGCCGCGATCA
CGGCCTCGAACAGCCCCAGCACCTCACAACGGTCAACGAACGCCGGTATC
GAAAGTAATACCGAGGCCACCGCCGGCAGCTTCGTCAGAGACCAGGCACC
GGTTGACATCGCCATCGATGCGGCGGAACCGATAGAGAATGCAACGGAGT
TCAGATCGGAAGCCGACGAAGCTTTCAAGCTCACGGTGCGACAGGACGTC
AGGAGCAAGGCCGGCCTGAAACAACTAGGCCGGTCCATCCTCGTTTTCGA
CTTCCAGCCGGCCGCCGCGATCACGGCCTCGAACAGCCCCAGCACCTCAC
AACGGTCAACGAACGCCGGTATCGAAAGTAATACCGAGGCCACCGCCGGC
AGCTTCGTCAGAGACCAGGCACCGGTTGACATCGCCATCGATGCGGCGGA
ACCGATAGAGAATGCA
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