mRNA_H-canaliculatus_F_contig12307.1977.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12307.1977.1
Unique NamemRNA_H-canaliculatus_F_contig12307.1977.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12307.1977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12307contigH-canaliculatus_F_contig12307:1571..2069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size499
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12307.1977.1prot_H-canaliculatus_F_contig12307.1977.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12307 1609..1941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.6497252-UTR-H-canaliculatus_F_contig12307:1570..16081622928947.6497252-UTR-H-canaliculatus_F_contig12307:1570..1608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12307 1571..1608 +
1696845624.9329646-UTR-H-canaliculatus_F_contig12307:1570..16081696845624.9329646-UTR-H-canaliculatus_F_contig12307:1570..1608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12307 1571..1608 +
1622928947.680054-UTR-H-canaliculatus_F_contig12307:1941..20691622928947.680054-UTR-H-canaliculatus_F_contig12307:1941..2069Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12307 1942..2069 +
1696845624.95105-UTR-H-canaliculatus_F_contig12307:1941..20691696845624.95105-UTR-H-canaliculatus_F_contig12307:1941..2069Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12307 1942..2069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.6655807-CDS-H-canaliculatus_F_contig12307:1608..19411622928947.6655807-CDS-H-canaliculatus_F_contig12307:1608..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12307 1609..1941 +
1696845624.9417796-CDS-H-canaliculatus_F_contig12307:1608..19411696845624.9417796-CDS-H-canaliculatus_F_contig12307:1608..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12307 1609..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12307.1977.1

>prot_H-canaliculatus_F_contig12307.1977.1 ID=prot_H-canaliculatus_F_contig12307.1977.1|Name=mRNA_H-canaliculatus_F_contig12307.1977.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
MRRHDRHCLACGATCLLATDSSKSTSVGFDFPVQDHLPRTNRGKRQVQRE
QQRPFHHGWHPRVFQRVKHLIALLNAADTLFSAKVINVPHRTTIIVCTRV
ACGRCYHIEG*
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mRNA from alignment at H-canaliculatus_F_contig12307:1571..2069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12307.1977.1 ID=mRNA_H-canaliculatus_F_contig12307.1977.1|Name=mRNA_H-canaliculatus_F_contig12307.1977.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=499bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12307:1571..2069+ (Hapterophycus canaliculatus Oshoro5f female)
GCACAACAGAAATATGAAGCAAAGCGTTGCAGATATGAATGAGGCGTCAC
GATAGACATTGCTTGGCGTGCGGTGCGACATGCTTGCTTGCGACGGACAG
TTCCAAAAGCACTTCCGTGGGTTTCGACTTTCCCGTTCAAGATCATCTCC
CACGAACCAACCGGGGTAAAAGACAGGTGCAACGCGAGCAACAGCGTCCA
TTTCATCATGGATGGCACCCAAGAGTCTTCCAGCGCGTGAAGCACCTGAT
TGCTCTTCTCAATGCTGCTGATACGTTATTTTCCGCCAAAGTGATTAATG
TTCCACATCGAACGACGATTATTGTTTGCACCCGCGTGGCATGCGGACGA
TGCTACCACATAGAAGGGTAGCTCCATCCCCTCGCCCCCCATCGATGTGC
CCAAGTAGAATCGGTAACATGGAAGATGCTAACGAAGCAAGTCTCTGTGA
TGTGCTGGCGAGGTGCCGAACGAAGCGGTGGTTTGAAACGAGTTCGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12307:1571..2069+

>mRNA_H-canaliculatus_F_contig12307.1977.1 ID=mRNA_H-canaliculatus_F_contig12307.1977.1|Name=mRNA_H-canaliculatus_F_contig12307.1977.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12307:1571..2069+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGCGTCACGATAGACATTGCTTGGCGTGCGGTGCGACATGCTTGCT
TGCGACGGACAGTTCCAAAAGCACTTCCGTGGGTTTCGACTTTCCCGTTC
AAGATCATCTCCCACGAACCAACCGGGGTAAAAGACAGGTGCAACGCGAG
CAACAGCGTCCATTTCATCATGGATGGCACCCAAGAGTCTTCCAGCGCGT
GAAGCACCTGATTGCTCTTCTCAATGCTGCTGATACGTTATTTTCCGCCA
AAGTGATTAATGTTCCACATCGAACGACGATTATTGTTTGCACCCGCGTG
GCATGCGGACGATGCTACCACATAGAAGGGTAGATGAGGCGTCACGATAG
ACATTGCTTGGCGTGCGGTGCGACATGCTTGCTTGCGACGGACAGTTCCA
AAAGCACTTCCGTGGGTTTCGACTTTCCCGTTCAAGATCATCTCCCACGA
ACCAACCGGGGTAAAAGACAGGTGCAACGCGAGCAACAGCGTCCATTTCA
TCATGGATGGCACCCAAGAGTCTTCCAGCGCGTGAAGCACCTGATTGCTC
TTCTCAATGCTGCTGATACGTTATTTTCCGCCAAAGTGATTAATGTTCCA
CATCGAACGACGATTATTGTTTGCACCCGCGTGGCATGCGGACGATGCTA
CCACATAGAAGGGTAG
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