mRNA_H-canaliculatus_F_contig12300.1975.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12300.1975.1
Unique NamemRNA_H-canaliculatus_F_contig12300.1975.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: D7FP55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP55_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 6.640e-42
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGGAEAAEE 228
            LGLLEGK VADIREQL+QDYKSTMLANWGVFVPAAV+NLAFCPPELRVLFLNVVFFGWTIFLSTVVSKG  EA EE
Sbjct:  121 LGLLEGKAVADIREQLNQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEE 196
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: A0A6H5L0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V0_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.060e-42
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGGAEAAEE 228
            LGLLEGK VADIREQLDQDYKSTMLANWGVFVPAAV+NLAFCPPELRVLFLNVVFFGWTIFLSTVVSKG  EA EE
Sbjct:  196 LGLLEGKAVADIREQLDQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEE 271
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: A0A7S3PZB9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZB9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.290e-26
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGGAEAAEE 228
            LGLLEGK+ +D++EQLD+DYK TM ANW ++VPA  +N+AFCPP LRVLFLN VFF W+IFLS  ++  G EA +E
Sbjct:  184 LGLLEGKSASDVKEQLDRDYKDTMFANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNSDGEEAPKE 259
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: A0A7R9W596_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W596_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.200e-25
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 204
            LGLLEGKT   I+ QLD+DYK TMLANW ++VPA V+N+AFCPP LRVLFLNVVFF W+IFLS  ++K
Sbjct:  187 LGLLEGKTTDAIKSQLDEDYKDTMLANWKLWVPATVVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 254
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: B8BXV6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV6_THAPS)

HSP 1 Score: 100 bits (248), Expect = 1.040e-24
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 204
            LG LEGKTV +I++QLD DY  TMLANW ++VPA  +N+AFCPP LRVLFLNVVFF W+IFLS  ++K
Sbjct:  124 LGFLEGKTVEEIKKQLDDDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 191
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: A0A7S2W2E8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2E8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.250e-24
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 204
            LGLLEGKT+  +++QLD DYK TM+ANW ++VPA  +N+AFCPP LRVLFLN VFF W+IFLS  ++K
Sbjct:  169 LGLLEGKTMESVKQQLDNDYKDTMIANWKLWVPATAVNIAFCPPLLRVLFLNCVFFFWSIFLSLKLNK 236
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: A0A835YN24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN24_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.180e-24
Identity = 46/79 (58.23%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVS---KGGAEAAEE 228
            LGLLEGK++A+++++L++ Y STM+ANW +++PA+ +NLAFCPP LRVLF NVVFF W+IFLS VV+   K   EAA +
Sbjct:  117 LGLLEGKSLAEVKQKLNESYGSTMIANWKLWIPASFVNLAFCPPPLRVLFTNVVFFCWSIFLSIVVNAPQKDTEEAASD 195
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BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: A0A7R9ZUR5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZUR5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.010e-24
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 204
            LGLLEGKTV  I++QL+ DY  TMLANW ++VPA V+NLAF PP LRVL+LN VFF W+IFLS  ++K
Sbjct:   25 LGLLEGKTVDSIKQQLEDDYTDTMLANWKLWVPATVVNLAFVPPILRVLYLNCVFFFWSIFLSLKLNK 92
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: A0A7S1YNW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YNW0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.540e-23
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 204
            LG+LEGK++  I+EQLD+DY  TMLANW ++VPA  +N+AFCPP LRVLFLNVVFF W+IFLS  ++K
Sbjct:  204 LGVLEGKSLDSIKEQLDEDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNK 271
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Match: K0R1J6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1J6_THAOC)

HSP 1 Score: 98.2 bits (243), Expect = 2.440e-23
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLFLNVVFFGWTIFLSTVVSK 204
            LG LEGKT  +I++QLD DYK TM+ANW ++VPA  +N+AFCPP LRVLFLN VFF W+IFLS  ++K
Sbjct:  184 LGFLEGKTSEEIKQQLDDDYKDTMIANWKLWVPATAVNIAFCPPILRVLFLNCVFFFWSIFLSLKLNK 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12300.1975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP55_ECTSI6.640e-4292.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0V0_9PHAE9.060e-4293.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3PZB9_9STRA1.290e-2663.16Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9W596_9STRA4.200e-2570.59Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8BXV6_THAPS1.040e-2467.65Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2W2E8_9STRA4.250e-2464.71Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A835YN24_9STRA6.180e-2458.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9ZUR5_9STRA8.010e-2466.18Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]
A0A7S1YNW0_9STRA1.540e-2366.18Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0R1J6_THAOC2.440e-2364.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12300contigH-canaliculatus_F_contig12300:2845..3712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.2e-32
Seed eggNOG ortholog2880.D7FP55
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0030154,GO:0032502,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043473,GO:0044424,GO:0044444,GO:0044464,GO:0048066,GO:0048869,GO:0050896,GO:0050931,GO:0050935,GO:0051716,GO:0070887,GO:1901700,GO:1901701
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.5271606-CDS-H-canaliculatus_F_contig12300:2844..29221622928947.5271606-CDS-H-canaliculatus_F_contig12300:2844..2922Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12300 2845..2922 -
1696845624.8815267-CDS-H-canaliculatus_F_contig12300:2844..29221696845624.8815267-CDS-H-canaliculatus_F_contig12300:2844..2922Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12300 2845..2922 -
1622928947.5452213-CDS-H-canaliculatus_F_contig12300:3556..37121622928947.5452213-CDS-H-canaliculatus_F_contig12300:3556..3712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12300 3557..3712 -
1696845624.9017055-CDS-H-canaliculatus_F_contig12300:3556..37121696845624.9017055-CDS-H-canaliculatus_F_contig12300:3556..3712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12300 3557..3712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12300.1975.1prot_H-canaliculatus_F_contig12300.1975.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12300 2845..3712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12300.1975.1

>prot_H-canaliculatus_F_contig12300.1975.1 ID=prot_H-canaliculatus_F_contig12300.1975.1|Name=mRNA_H-canaliculatus_F_contig12300.1975.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
LGLLEGKTVADIREQLDQDYKSTMLANWGVFVPAAVINLAFCPPELRVLF
LNVVFFGWTIFLSTVVSKGGAEAAEEV*
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mRNA from alignment at H-canaliculatus_F_contig12300:2845..3712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12300.1975.1 ID=mRNA_H-canaliculatus_F_contig12300.1975.1|Name=mRNA_H-canaliculatus_F_contig12300.1975.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=868bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12300:2845..3712- (Hapterophycus canaliculatus Oshoro5f female)
CTGGGTCTCCTGGAAGGCAAGACCGTTGCCGACATCCGCGAGCAGCTGGA
CCAGGACTACAAGAGCACCATGCTGGCGAACTGGGGAGTTTTCGTACCGG
CGGCCGTGATCAACCTCGCGTTTTGCCCCCCCGAGCTTCGAGTCCTGTTC
TTGAACGTGAGCGTGTTCGCGGTCCTCTCGTGTGTGCCTATGTGTGTCGT
GCGTTCAGTTGGTGCTTTGTAGGTCCCCCAAGTGGTGAGTGCATCGGTGT
TATCGTTTCTCCTTCGAATTTGTTTTGGTGGCACGAACCTCGCGATTGGT
GAACGTGTTCGAGGTTCTTCCTTGTCTGTATTTCTGCACGTGGTCGCCCA
TGGGTTCATCAAGGAATACACGACGCGAAACTGACTACGACATTCTTCTT
GTCCTGTGTCTGTTCGCGCTCTTGCTTGTCAGTTCGTGGTGTTCGGTATC
GATTTGCTATGGTCTCTCCGGGAGGCCGTCGTACCACTTCCAGATGAATC
CCCATGTTGGATAACTCATCGCTTGTCTGCGTTATGCCGGAGTGTGGAGG
CTGAAGAAACTTTAAGGCAGGAGTAAGAACGGTAGCAGCAGCACCTATAT
AATCCGCAGGCAGCAACAACGACGGAAAACGACTGCTATCCAGTGGTCTT
GGGTGGGTACTCGTTAACGCTAACAAAAGCGTTGTCCCCTCGGTTGCGTG
TTAAGTTTCGTGTCCGTTATCGTATTTTGATCGTTTGCTGGCTTACCTCG
CTCCCTCGGTCGTTGCCGTTGTGTCTTGTTTCACAAACAGGTGGTGTTCT
TCGGGTGGACGATTTTTCTCAGCACAGTCGTCAGCAAAGGAGGGGCGGAG
GCGGCAGAAGAAGTTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12300:2845..3712-

>mRNA_H-canaliculatus_F_contig12300.1975.1 ID=mRNA_H-canaliculatus_F_contig12300.1975.1|Name=mRNA_H-canaliculatus_F_contig12300.1975.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12300:2845..3712- (Hapterophycus canaliculatus Oshoro5f female)
CTGGGTCTCCTGGAAGGCAAGACCGTTGCCGACATCCGCGAGCAGCTGGA
CCAGGACTACAAGAGCACCATGCTGGCGAACTGGGGAGTTTTCGTACCGG
CGGCCGTGATCAACCTCGCGTTTTGCCCCCCCGAGCTTCGAGTCCTGTTC
TTGAACCTGGGTCTCCTGGAAGGCAAGACCGTTGCCGACATCCGCGAGCA
GCTGGACCAGGACTACAAGAGCACCATGCTGGCGAACTGGGGAGTTTTCG
TACCGGCGGCCGTGATCAACCTCGCGTTTTGCCCCCCCGAGCTTCGAGTC
CTGTTCTTGAACGTGGTGTTCTTCGGGTGGACGATTTTTCTCAGCACAGT
CGTCAGCAAAGGAGGGGCGGAGGCGGCAGAAGAAGTTTAGGTGGTGTTCT
TCGGGTGGACGATTTTTCTCAGCACAGTCGTCAGCAAAGGAGGGGCGGAG
GCGGCAGAAGAAGTTTAG
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