mRNA_H-canaliculatus_F_contig1017.197.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1017.197.1
Unique NamemRNA_H-canaliculatus_F_contig1017.197.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1017.197.1 vs. uniprot
Match: D8LU63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU63_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.370e-28
Identity = 197/482 (40.87%), Postives = 232/482 (48.13%), Query Frame = 1 
Query:  532 RTGAQLDFHGNVRMDVPFLMDGAFLEK--GDTGDAALS--VDSGQAELRSILLGTL-DAEDEEDASPDAKLKAATKSFASRTYRGGRTLVGLDTSASNANANETARPPTGISSXXXXXXXXXXXTSMGPGRLFPASTGXXXXXXXXXXXXXXXNGPFES--VIAGGGG---GTGLSGETYADFGLDNLPELTSNDFTGLAAFDTG--GAHLAREAHQQHN-----TLPRQPDSPNFAAATSGSYAPSFVNVRLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLVAAKMPA-----------------EEAWWDILEGEEFVAMPEPVWGVA--LDAQSVEEESLRGNPRG--WQRGGGG--AAERSRGMTENMDISSPGLGGDELGGGHAPGRXXXXXXXSAAAVPSYLSKSRPLLPPCSSSLTVT--AAGLGGVLVGPGDECFAGDSSRGNRRDRNCEV 1851
            R    + F G+ RMD  FLMDG    +  G  G A+L   VD+G+AELRSILLG   D  +  D+  D  L  A  S ++R  +    +  +         +E  RP  G+                G GR   AS G                  FES   +A GGG       +   + DFGLD+LPEL+SNDF GL   +TG    +L R   Q H      T  R P     AA  +G ++ S   VRLG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          EEAWW++LEGEEFVAMPEP WG A  LD QS+ EE  R NPRG  W+  GGG    E +RGM E+               G  P         S AA    LS         SSS+T    AAGLGGV+V PGDE F+GD S  +   RN  V
Sbjct:  360 RVAVDISFRGDTRMDGSFLMDGGSFGETSGGAGGASLGAGVDTGRAELRSILLGDAGDTPEVRDSVADGGLSFAVPSSSARVAKPAPGVQAV---------HEALRPAGGL----------------GFGRDSAASRGGEHAGARSS---------FESGGSLASGGGTAPAPAPAAGVFVDFGLDHLPELSSNDFAGLGGVETGVCANYLPRVTLQHHRYHQQRTASRGPYDLAGAAVAAGVFS-SCEGVRLGSDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAWWEVLEGEEFVAMPEPTWGGAGGLDTQSMMEEPFRTNPRGCGWRSDGGGRGGVETNRGMAES---------------GRGPHGDGGRTVASHAATARSLSLD-------SSSITAATAAAGLGGVVVMPGDEGFSGDMSGRDSCGRNGGV 784
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1017.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU63_ECTSI3.370e-2840.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1017contigH-canaliculatus_F_contig1017:29566..31425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1860
Cds size1860
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.5794098-CDS-H-canaliculatus_F_contig1017:29565..314251622928646.5794098-CDS-H-canaliculatus_F_contig1017:29565..31425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1017 29566..31425 +
1696845511.645845-CDS-H-canaliculatus_F_contig1017:29565..314251696845511.645845-CDS-H-canaliculatus_F_contig1017:29565..31425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1017 29566..31425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1017.197.1prot_H-canaliculatus_F_contig1017.197.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1017 29566..31425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1017.197.1

>prot_H-canaliculatus_F_contig1017.197.1 ID=prot_H-canaliculatus_F_contig1017.197.1|Name=mRNA_H-canaliculatus_F_contig1017.197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=620bp
VRRPSYLHREEVGSDGDRAARFGNAGGGGGGNSSGRGNATGGGGDRFKSA
KTEERKPASVPPSLVPLAKRGEDLEAAGAGASSNTCPDAGNLGCGSGRVR
PRGGGTGLGQAAASVTAGLLEPRQGSGVSTSSSRGGGGSGDGGKAAKFHT
RFPAAGGGREGGGRGAGQAEAGVGKVKRTGAQLDFHGNVRMDVPFLMDGA
FLEKGDTGDAALSVDSGQAELRSILLGTLDAEDEEDASPDAKLKAATKSF
ASRTYRGGRTLVGLDTSASNANANETARPPTGISSSSTSSTSCCSSTSMG
PGRLFPASTGTGTGTGTGRGTGTGTNGPFESVIAGGGGGTGLSGETYADF
GLDNLPELTSNDFTGLAAFDTGGAHLAREAHQQHNTLPRQPDSPNFAAAT
SGSYAPSFVNVRLGGGGSLPPMESSSGVSDDVSSEAFSSSDGSSSVSVAA
AGGEGSAGGASSDTLVAAKMPAEEAWWDILEGEEFVAMPEPVWGVALDAQ
SVEEESLRGNPRGWQRGGGGAAERSRGMTENMDISSPGLGGDELGGGHAP
GRGAAPSEGSAAAVPSYLSKSRPLLPPCSSSLTVTAAGLGGVLVGPGDEC
FAGDSSRGNRRDRNCEVGRG
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mRNA from alignment at H-canaliculatus_F_contig1017:29566..31425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1017.197.1 ID=mRNA_H-canaliculatus_F_contig1017.197.1|Name=mRNA_H-canaliculatus_F_contig1017.197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1860bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1017:29566..31425+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCGACGTCCAAGCTACTTGCATAGGGAAGAGGTCGGCTCTGACGGTGA
CAGGGCCGCGAGGTTCGGCAATGCTGGTGGCGGCGGCGGCGGCAACAGCA
GCGGCCGGGGCAACGCTACCGGGGGCGGAGGCGACAGGTTCAAGAGCGCT
AAGACCGAAGAGCGGAAACCCGCGTCGGTACCGCCCTCTCTGGTGCCCCT
TGCCAAGCGCGGAGAGGACCTAGAAGCCGCTGGAGCTGGAGCTAGCTCGA
ACACGTGTCCTGACGCGGGGAACTTGGGGTGCGGCTCTGGCCGTGTACGC
CCGCGGGGAGGGGGCACAGGGCTCGGGCAGGCTGCGGCCTCCGTGACCGC
CGGTCTTCTCGAGCCGCGGCAGGGGAGCGGCGTGTCCACCTCCTCCTCTC
GCGGCGGGGGTGGTAGTGGCGACGGGGGCAAGGCAGCCAAGTTCCACACG
AGGTTTCCCGCCGCAGGAGGCGGACGAGAAGGAGGAGGAAGAGGAGCAGG
GCAGGCAGAGGCAGGGGTCGGCAAGGTGAAAAGAACGGGAGCGCAACTCG
ACTTCCACGGGAACGTAAGGATGGACGTGCCGTTTTTGATGGACGGCGCT
TTCCTGGAGAAGGGCGACACGGGAGACGCGGCCCTGAGCGTGGACAGCGG
CCAGGCAGAGCTACGCAGCATCCTGCTCGGGACGTTGGACGCGGAGGACG
AGGAGGACGCGTCGCCCGATGCGAAGCTTAAAGCCGCCACCAAGAGCTTC
GCCTCTCGAACCTACAGAGGCGGGAGAACGCTGGTTGGCCTGGACACCTC
CGCCTCCAACGCCAACGCCAACGAGACTGCACGACCGCCGACTGGCATCA
GCTCCAGCAGCACCAGCAGCACCAGCTGTTGCAGCAGCACCAGCATGGGG
CCCGGGCGGCTTTTTCCGGCGTCAACGGGAACGGGAACGGGAACGGGAAC
AGGAAGAGGAACAGGAACAGGAACGAACGGGCCGTTCGAGAGCGTGATCG
CCGGCGGGGGTGGTGGAACGGGCTTGTCAGGCGAGACCTACGCGGATTTC
GGTCTCGACAACCTGCCCGAGCTCACCAGCAACGACTTCACGGGCCTCGC
CGCGTTCGACACCGGCGGCGCTCACCTGGCCAGAGAGGCCCACCAACAGC
ACAACACATTGCCTCGACAGCCCGACTCGCCAAACTTCGCCGCCGCCACC
TCTGGGTCCTATGCGCCGAGCTTCGTGAACGTCCGGCTCGGGGGCGGCGG
GTCGCTGCCTCCGATGGAGTCCTCGAGCGGGGTGAGCGACGACGTTTCGT
CGGAGGCGTTTTCTTCTTCCGACGGGTCGTCCTCGGTGTCCGTCGCGGCT
GCGGGGGGGGAGGGGTCGGCGGGGGGAGCGAGCAGCGACACGCTCGTGGC
GGCCAAGATGCCAGCCGAGGAGGCCTGGTGGGACATCCTCGAGGGGGAGG
AGTTCGTGGCCATGCCGGAGCCGGTCTGGGGAGTGGCTCTAGACGCCCAG
AGCGTGGAAGAGGAGTCGCTCCGAGGGAACCCTCGCGGTTGGCAGAGGGG
CGGCGGGGGCGCCGCAGAGCGCAGCAGGGGCATGACCGAGAACATGGACA
TCAGCTCTCCGGGGCTCGGCGGTGACGAGCTCGGAGGGGGCCACGCCCCG
GGCAGGGGCGCTGCCCCCAGCGAGGGAAGCGCAGCGGCGGTGCCGTCGTA
CTTGTCGAAGAGCCGTCCGTTGCTGCCACCGTGTAGTTCGTCGCTGACGG
TGACTGCGGCGGGGCTCGGAGGCGTTCTAGTCGGACCGGGCGACGAGTGT
TTCGCGGGGGACAGCAGCAGGGGCAACCGCAGGGACCGCAACTGTGAGGT
CGGCCGGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1017:29566..31425+

>mRNA_H-canaliculatus_F_contig1017.197.1 ID=mRNA_H-canaliculatus_F_contig1017.197.1|Name=mRNA_H-canaliculatus_F_contig1017.197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1017:29566..31425+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCGACGTCCAAGCTACTTGCATAGGGAAGAGGTCGGCTCTGACGGTGA
CAGGGCCGCGAGGTTCGGCAATGCTGGTGGCGGCGGCGGCGGCAACAGCA
GCGGCCGGGGCAACGCTACCGGGGGCGGAGGCGACAGGTTCAAGAGCGCT
AAGACCGAAGAGCGGAAACCCGCGTCGGTACCGCCCTCTCTGGTGCCCCT
TGCCAAGCGCGGAGAGGACCTAGAAGCCGCTGGAGCTGGAGCTAGCTCGA
ACACGTGTCCTGACGCGGGGAACTTGGGGTGCGGCTCTGGCCGTGTACGC
CCGCGGGGAGGGGGCACAGGGCTCGGGCAGGCTGCGGCCTCCGTGACCGC
CGGTCTTCTCGAGCCGCGGCAGGGGAGCGGCGTGTCCACCTCCTCCTCTC
GCGGCGGGGGTGGTAGTGGCGACGGGGGCAAGGCAGCCAAGTTCCACACG
AGGTTTCCCGCCGCAGGAGGCGGACGAGAAGGAGGAGGAAGAGGAGCAGG
GCAGGCAGAGGCAGGGGTCGGCAAGGTGAAAAGAACGGGAGCGCAACTCG
ACTTCCACGGGAACGTAAGGATGGACGTGCCGTTTTTGATGGACGGCGCT
TTCCTGGAGAAGGGCGACACGGGAGACGCGGCCCTGAGCGTGGACAGCGG
CCAGGCAGAGCTACGCAGCATCCTGCTCGGGACGTTGGACGCGGAGGACG
AGGAGGACGCGTCGCCCGATGCGAAGCTTAAAGCCGCCACCAAGAGCTTC
GCCTCTCGAACCTACAGAGGCGGGAGAACGCTGGTTGGCCTGGACACCTC
CGCCTCCAACGCCAACGCCAACGAGACTGCACGACCGCCGACTGGCATCA
GCTCCAGCAGCACCAGCAGCACCAGCTGTTGCAGCAGCACCAGCATGGGG
CCCGGGCGGCTTTTTCCGGCGTCAACGGGAACGGGAACGGGAACGGGAAC
AGGAAGAGGAACAGGAACAGGAACGAACGGGCCGTTCGAGAGCGTGATCG
CCGGCGGGGGTGGTGGAACGGGCTTGTCAGGCGAGACCTACGCGGATTTC
GGTCTCGACAACCTGCCCGAGCTCACCAGCAACGACTTCACGGGCCTCGC
CGCGTTCGACACCGGCGGCGCTCACCTGGCCAGAGAGGCCCACCAACAGC
ACAACACATTGCCTCGACAGCCCGACTCGCCAAACTTCGCCGCCGCCACC
TCTGGGTCCTATGCGCCGAGCTTCGTGAACGTCCGGCTCGGGGGCGGCGG
GTCGCTGCCTCCGATGGAGTCCTCGAGCGGGGTGAGCGACGACGTTTCGT
CGGAGGCGTTTTCTTCTTCCGACGGGTCGTCCTCGGTGTCCGTCGCGGCT
GCGGGGGGGGAGGGGTCGGCGGGGGGAGCGAGCAGCGACACGCTCGTGGC
GGCCAAGATGCCAGCCGAGGAGGCCTGGTGGGACATCCTCGAGGGGGAGG
AGTTCGTGGCCATGCCGGAGCCGGTCTGGGGAGTGGCTCTAGACGCCCAG
AGCGTGGAAGAGGAGTCGCTCCGAGGGAACCCTCGCGGTTGGCAGAGGGG
CGGCGGGGGCGCCGCAGAGCGCAGCAGGGGCATGACCGAGAACATGGACA
TCAGCTCTCCGGGGCTCGGCGGTGACGAGCTCGGAGGGGGCCACGCCCCG
GGCAGGGGCGCTGCCCCCAGCGAGGGAAGCGCAGCGGCGGTGCCGTCGTA
CTTGTCGAAGAGCCGTCCGTTGCTGCCACCGTGTAGTTCGTCGCTGACGG
TGACTGCGGCGGGGCTCGGAGGCGTTCTAGTCGGACCGGGCGACGAGTGT
TTCGCGGGGGACAGCAGCAGGGGCAACCGCAGGGACCGCAACTGTGAGGT
CGGCCGGGGCGTGCGACGTCCAAGCTACTTGCATAGGGAAGAGGTCGGCT
CTGACGGTGACAGGGCCGCGAGGTTCGGCAATGCTGGTGGCGGCGGCGGC
GGCAACAGCAGCGGCCGGGGCAACGCTACCGGGGGCGGAGGCGACAGGTT
CAAGAGCGCTAAGACCGAAGAGCGGAAACCCGCGTCGGTACCGCCCTCTC
TGGTGCCCCTTGCCAAGCGCGGAGAGGACCTAGAAGCCGCTGGAGCTGGA
GCTAGCTCGAACACGTGTCCTGACGCGGGGAACTTGGGGTGCGGCTCTGG
CCGTGTACGCCCGCGGGGAGGGGGCACAGGGCTCGGGCAGGCTGCGGCCT
CCGTGACCGCCGGTCTTCTCGAGCCGCGGCAGGGGAGCGGCGTGTCCACC
TCCTCCTCTCGCGGCGGGGGTGGTAGTGGCGACGGGGGCAAGGCAGCCAA
GTTCCACACGAGGTTTCCCGCCGCAGGAGGCGGACGAGAAGGAGGAGGAA
GAGGAGCAGGGCAGGCAGAGGCAGGGGTCGGCAAGGTGAAAAGAACGGGA
GCGCAACTCGACTTCCACGGGAACGTAAGGATGGACGTGCCGTTTTTGAT
GGACGGCGCTTTCCTGGAGAAGGGCGACACGGGAGACGCGGCCCTGAGCG
TGGACAGCGGCCAGGCAGAGCTACGCAGCATCCTGCTCGGGACGTTGGAC
GCGGAGGACGAGGAGGACGCGTCGCCCGATGCGAAGCTTAAAGCCGCCAC
CAAGAGCTTCGCCTCTCGAACCTACAGAGGCGGGAGAACGCTGGTTGGCC
TGGACACCTCCGCCTCCAACGCCAACGCCAACGAGACTGCACGACCGCCG
ACTGGCATCAGCTCCAGCAGCACCAGCAGCACCAGCTGTTGCAGCAGCAC
CAGCATGGGGCCCGGGCGGCTTTTTCCGGCGTCAACGGGAACGGGAACGG
GAACGGGAACAGGAAGAGGAACAGGAACAGGAACGAACGGGCCGTTCGAG
AGCGTGATCGCCGGCGGGGGTGGTGGAACGGGCTTGTCAGGCGAGACCTA
CGCGGATTTCGGTCTCGACAACCTGCCCGAGCTCACCAGCAACGACTTCA
CGGGCCTCGCCGCGTTCGACACCGGCGGCGCTCACCTGGCCAGAGAGGCC
CACCAACAGCACAACACATTGCCTCGACAGCCCGACTCGCCAAACTTCGC
CGCCGCCACCTCTGGGTCCTATGCGCCGAGCTTCGTGAACGTCCGGCTCG
GGGGCGGCGGGTCGCTGCCTCCGATGGAGTCCTCGAGCGGGGTGAGCGAC
GACGTTTCGTCGGAGGCGTTTTCTTCTTCCGACGGGTCGTCCTCGGTGTC
CGTCGCGGCTGCGGGGGGGGAGGGGTCGGCGGGGGGAGCGAGCAGCGACA
CGCTCGTGGCGGCCAAGATGCCAGCCGAGGAGGCCTGGTGGGACATCCTC
GAGGGGGAGGAGTTCGTGGCCATGCCGGAGCCGGTCTGGGGAGTGGCTCT
AGACGCCCAGAGCGTGGAAGAGGAGTCGCTCCGAGGGAACCCTCGCGGTT
GGCAGAGGGGCGGCGGGGGCGCCGCAGAGCGCAGCAGGGGCATGACCGAG
AACATGGACATCAGCTCTCCGGGGCTCGGCGGTGACGAGCTCGGAGGGGG
CCACGCCCCGGGCAGGGGCGCTGCCCCCAGCGAGGGAAGCGCAGCGGCGG
TGCCGTCGTACTTGTCGAAGAGCCGTCCGTTGCTGCCACCGTGTAGTTCG
TCGCTGACGGTGACTGCGGCGGGGCTCGGAGGCGTTCTAGTCGGACCGGG
CGACGAGTGTTTCGCGGGGGACAGCAGCAGGGGCAACCGCAGGGACCGCA
ACTGTGAGGTCGGCCGGGGC
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