mRNA_H-canaliculatus_F_contig1017.196.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE) HSP 1 Score: 568 bits (1465), Expect = 2.520e-184 Identity = 378/627 (60.29%), Postives = 403/627 (64.27%), Query Frame = 3
Query: 474 PTGAGGQQPTPQQQEQRFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPT------IPAEFAHDVHGHGLNDGASGXXXXXXXXXXXXXXXXXXXXXXPSSSKAPRGGRKP-DPGRQSAGLPAGAAAAGGHERSL------SLGQSGIAPGAAATAAAVGVRXXXXXXX----HNRTGSGPALMGPRGMDVXXXXXXXXXXMGMGMDKGDWEGGQGGQGPLPSLDSVTGGLRSLHG----GRHGNVGGQGGGAEMPPTLGRLVPCPENVVSRESSPMKPGQGGIGGNANGNTNS--SRMHTQSSPDFQHLGNRADGG-HRPPFGRSQDDLNLTPRSHFAGPPI-MGLHQHVGGNWATGGVHGGGGVGYLNQLIRGQTPDFFASNGSGNSSNPHLRSPRPLQHMHSRDDLDALRPRKTRRTGPAFDPGSSQNELQDPAQQHHAFPPVSPRAVANGS-AEGGFMGERGGYLNTTAVYAAADEVPPAAPRRLVSRHNTPSRPERSXXXXXXXXXXXXEGDDAGKRGLQLMNLSEPSSMDTEGMTTGGGVGGAHTSQGFQ 2276
P G QPT QQQEQRFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRI DSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFP IP EFAHDVHGHGLNDG G + RGGRK D R S G + A G SLGQSG+ XXXXXXX H RT SG ALMG R M ++KG W+ G G G LPSL+ VTGGLR+LHG GR GN GGQG G EMPPTLGRLVP ENVVSRE SPMKPG G +RMH SS D+QH G R DGG H P +GRSQDDLNLTPRSHFAGP + +GLHQ V GNWA GGVHGGG GY N L Q +FF SNGS NS+ SPR LQ MHSRDDLD LRPRKTRRTGP+FD S QDP+ AF +SPRA G GGFM ERGGYLNT+AVYA+ DE+PPAAPRRLVSRH+TPSRPERS XXXXXX LM+L +PSSMDT+G A TSQGFQ
Sbjct: 3 PAAGGAAQPTLQQQEQRFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEEEAFPQIPPEFAHDVHGHGLNDGVGGGVGDGGN----------------APKAGVRGGRKSTDSNRFSVGSSSKQINAAGXXXXXXXXXXXSLGQSGMXXXXXXXXXXXXXXXXXXXXXXXXGHIRTESGSALMGRR-------------EDRMAVEKGVWDAGGHGHGRLPSLNLVTGGLRNLHGSGNGGRTGNGGGQGVGTEMPPTLGRLVPSAENVVSREPSPMKPGAGXXXXXXXXXXXXXXNRMHAGSS-DYQHTGPRLDGGGHHPTYGRSQDDLNLTPRSHFAGPIMGLGLHQGVAGNWAAGGVHGGGPGGYSNSLTPNQ--EFFGSNGSRNSNPYQGSSPRVLQTMHSRDDLDVLRPRKTRRTGPSFDQESHAYN-QDPSPTTKAFLAMSPRATGTGGDGGGGFMDERGGYLNTSAVYASPDELPPAAPRRLVSRHSTPSRPERSSASKNKXXXXXXXXXXXXXXXXHLMSL-DPSSMDTDGTXXXXXXXXALTSQGFQ 595
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI) HSP 1 Score: 543 bits (1400), Expect = 1.520e-182 Identity = 375/622 (60.29%), Postives = 397/622 (63.83%), Query Frame = 3
Query: 513 QEQRFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHGHGLNDGASGXXXXXXXXXXXXXXXXXXXXXXPSSSKAPRGGRKP-DPGRQSAGLPAGAAAAGGHERSLS------LGQSGIAPGAAATAAAVGVRXXXXXXX----HNRTGSGPALMGPRGMDVXXXXXXXXXXMGMGMDKGDWEGGQGGQGPLPSLDSVTGGLRSLHGGRHGNVGGQGG------------GAEMPPTLGRLVPCPENVVSRESSPMKPGQGGIGGNANGNTNSSRMHTQSSPDFQHLGNRADGG-HRPPFGRSQDDLNLTPRSHFAGPPI-MGLHQHVGGNWATGGVHGGGGVG-------YLNQLIRGQTPDFFASNGSGNSSNPHLRSPRPLQHMHSRDDLDALRPRKTRRTGPAFDPGSSQNELQDPAQQHHAFPPVSPRAVANGS-AEGGFMGERGGYLNTTAVYAAADEVPPAAPRRLVSRHNTPSRPERSXXXXXXXXXXXXEGDDAGKRGLQLMNLSEPSSMDTEGMTTGGGVGG-AHTSQGFQ 2276
QEQRFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRI DSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFP IP EFAHDVHGHGLNDG G RGGRK D R S G + A LGQSG+A XXXXXXX H RT SG ALMG R D M ++KG W+ G G G LPSLD VTGGLR+LH G GG G EMPPTLGRLVP ENVVSRESSPMKPG GG GGN RMH SS D+QH GNR DGG H P +GRSQDDLNLTPRSHFAGP + +GLHQ V GNWA GGVHG Y N L Q +FF SNGS NS+ SPR LQ+MHSRDDLD LRPRKTRRTGP+FD S N QDP+Q AF +SPRA G GGF+ ERGGYLNT+AVYA+ DE+PPAAPRRLVSRHNTPSRPERSXXXXXXXXXXXX +L EPSSMDT+ A TSQGFQ
Sbjct: 39 QEQRFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEIPPEFAHDVHGHGLNDGVGGGVGDGGNVP----------------KAGARGGRKSTDSNRSSVGSSSKQVNASXXXXXXXXXXXXXLGQSGMAXXXXXXXXXXXXXXXXXXXXXXXGHIRTESGSALMGRR-EDC------------MAVEKGVWDAGGHGHGRLPSLDLVTGGLRNLH--------GSGGXXXXXXXXXXXVGTEMPPTLGRLVPSAENVVSRESSPMKPGAGGGGGN--------RMHAGSS-DYQHTGNRLDGGGHHPTYGRSQDDLNLTPRSHFAGPIMGLGLHQGVAGNWAAGGVHGXXXXXXXXXXXXYANSLTPNQ--EFFGSNGSRNSNPYQGSSPRVLQNMHSRDDLDVLRPRKTRRTGPSFDQESHANN-QDPSQ---AFLAMSPRAAGTGGDGGGGFIEERGGYLNTSAVYASPDELPPAAPRRLVSRHNTPSRPERSXXXXXXXXXXXXXXXXXXXXXXXXXSL-EPSSMDTDXXXXXXXXXXXALTSQGFQ 607
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.890e-29 Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 3
Query: 564 LFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHGHG 875
L+ IL+ E P+VI W+++G+AF I D +F +++P FK +K+SSFQRQLNLYGFRK+VRG EAGGYMH F+RG+ + L VRRG P P ++ ++G G
Sbjct: 6 LYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGSG 109
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA) HSP 1 Score: 121 bits (304), Expect = 5.400e-29 Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 3
Query: 564 LFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHG 869
L IL+ E +IGWS SG++F I + F +I+P++FK +K+SSFQRQLNLYGFRK+V+GNE+G Y+H F RG PE L QVRRG P P + H V+G
Sbjct: 8 LASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYG 109
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A6H5L4Y2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y2_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.560e-26 Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 3
Query: 540 SGQAFALGLFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHGHG 875
SG F L +LK E ++ W+++G AF I D+ F ++++ +FK NK+SSFQRQLNLYGFRK+V+G E+G YMHP+F R +P+ LS+VRRG P P E+ V+G G
Sbjct: 3 SGNGFPYILHDLLKNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPDLLSEVRRGIVPPCPPEYTRKVYGSG 114
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A835YPY0_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY0_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.460e-26 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 3
Query: 585 EDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHGHG 875
E P VI W++SG+AF I D F I+P+ FK +K+SSFQRQLNLYGFRK+VRG E+GGYMH F+RG+ + L V+RG+ P P E+ ++G G
Sbjct: 2 EAPDVIKWTSSGQAFGIQDMATFRTVILPKHFKHDKFSSFQRQLNLYGFRKIVRGRESGGYMHKDFQRGRLDLLKHVKRGYMPPCPPEYEKKIYGSG 98
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK) HSP 1 Score: 121 bits (304), Expect = 6.730e-26 Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 3
Query: 522 RFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHGHGLN 881
R G+RG+ QAFA L++IL+ E ++ W+A+G AF + D ++F KEI+ ++F+ +K++SFQRQLNLYGFRK+ RG++AG Y H F +GKP+ LS VRR + P+ H HG L+
Sbjct: 5 RTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSSSPSP-PHPAHGFALH 123
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.010e-25 Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = 3
Query: 552 FALGLFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHG 869
F L IL+ E P++I WS++G+AF I + F +I+P++FK +K+SSFQRQLNLYGFRK+V+G E+G Y+H F+RG PE L QVRRG P P + V+G
Sbjct: 24 FPYVLISILENESPEIITWSSTGRAFGIRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRRGQVPPCPPRYERKVYG 129
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A6H5JIP5_9PHAE (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP5_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.080e-25 Identity = 53/118 (44.92%), Postives = 83/118 (70.34%), Query Frame = 3
Query: 519 QRFGKRGS-GQAFALGLFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPTIPAEFAHDVHG 869
QR G R + G+ FA+ + IL E +I W+ SG+AF++ D +F +EI+ ++F+ NK+SSF+RQLNLYG+RK+++G +AG YMHP F+RG+PE L +V++G P +++HG
Sbjct: 41 QRPGPRTTAGRGFAVKFYDILSQESSDIITWTKSGQAFQVVDYTRFSEEILLKYFRHNKFSSFRRQLNLYGYRKVIKGPDAGAYMHPFFQRGRPELLGEVKKGKVPHYEMHGVNEIHG 158
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.040e-25 Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query: 522 RFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRISDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRR 821
RFGKRG+ QAFA LF++L E P ++ W+ SG AFRI D EKF E + ++FK N +SFQRQLNLYGFRK ++G ++GG+ H F+R +PE L +VRR
Sbjct: 19 RFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRR 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1017.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1017.196.1 >prot_H-canaliculatus_F_contig1017.196.1 ID=prot_H-canaliculatus_F_contig1017.196.1|Name=mRNA_H-canaliculatus_F_contig1017.196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=632bp MLDVPAAGGPSAGASTGTNNATAAAADGAGKPTGAGGQQPTPQQQEQRFGback to top mRNA from alignment at H-canaliculatus_F_contig1017:175..10209- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1017.196.1 ID=mRNA_H-canaliculatus_F_contig1017.196.1|Name=mRNA_H-canaliculatus_F_contig1017.196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=10035bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1017:175..10209- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1017:175..10209- >mRNA_H-canaliculatus_F_contig1017.196.1 ID=mRNA_H-canaliculatus_F_contig1017.196.1|Name=mRNA_H-canaliculatus_F_contig1017.196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1017:175..10209- (Hapterophycus canaliculatus Oshoro5f female)back to top |