mRNA_H-canaliculatus_F_contig12280.1958.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12280.1958.1
Unique NamemRNA_H-canaliculatus_F_contig12280.1958.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: D7FSY5_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY5_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 1.960e-144
Identity = 236/286 (82.52%), Postives = 245/286 (85.66%), Query Frame = 1 
Query:    1 RAHSSVRSLSSSSYRRP---PTSTRRSLDVAGSAAGRWATSGADQRRQRXXXXXXXXXXXXXXXXXPGAVEV--PEELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEKKMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            RA+SSVRSLSS  YRRP   PT+ R  LD    A  RW  S A QR +         XXXXX      AVEV   EELPTNEGSPELLKIRHTSAHVMAMAVQ+LFPGTQVTIGPWIDNGFYYDF++EE  MTDSDLK IKKEMDKIIRQKLPL+REEVTREEAR+RIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLP KGIELQTLAGAYWRGDENRPALQRIYGTAWE+PAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV
Sbjct:   28 RAYSSVRSLSS--YRRPAARPTNGR-PLDGGSRAPDRWVNSRAGQRPRMSTAAAPAAXXXXX------AVEVVEKEELPTNEGSPELLKIRHTSAHVMAMAVQRLFPGTQVTIGPWIDNGFYYDFYNEETTMTDSDLKKIKKEMDKIIRQKLPLVREEVTREEARSRIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPQKGIELQTLAGAYWRGDENRPALQRIYGTAWENPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 304
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 1.780e-140
Identity = 229/285 (80.35%), Postives = 238/285 (83.51%), Query Frame = 1 
Query:    1 RAHSSVRSLSSSSYRRPPT--STRRSLDVAGSAAGRWATSGADQRRQRXXXXXXXXXXXXXXXXXPGAVEV--PEELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEKKMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            RA+SSVRSLSS  YRRP T  + RR LD    A  RW  S A +R +                    AVEV   EELPTNE SPELLKIRHTSAHVMAMAVQ+LFPGTQVTIGPWIDNGFYYDFF+EE  MTDSDLK IKKEMDKIIRQKLPL+REEVTREEAR RIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHV+TTGDLP KGIELQTLAGAYWRGDENRPALQRIYGTAWE+PAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV
Sbjct:   28 RAYSSVRSLSS--YRRPATHPTNRRPLDGERRAPHRWVDSRAGRRPRMSTAAAPAAAPA-------AAVEVVEKEELPTNESSPELLKIRHTSAHVMAMAVQRLFPGTQVTIGPWIDNGFYYDFFNEETTMTDSDLKEIKKEMDKIIRQKLPLVREEVTREEARRRIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVDTTGDLPQKGIELQTLAGAYWRGDENRPALQRIYGTAWENPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 303
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A835ZFX3_9STRA (Threonine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFX3_9STRA)

HSP 1 Score: 354 bits (909), Expect = 4.990e-115
Identity = 172/213 (80.75%), Postives = 192/213 (90.14%), Query Frame = 1 
Query:  205 VPEELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEKKMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            VP ELPTN+ S  LLKIRHT+AHVMAMAVQKLFP TQVTIGPWID+GFYYDFF+ +K+ ++ DLK IKKEMD+II+ KLPL REEV+REEAR RIEA+GE FKLEILDSIKTEPIT+YH+G++WWDLCAGPHVETTGDLPPK I+LQ +AGAYWRGDE R  LQRIYGTAWESP QLKEHKR M EAKRRDHRVLGKKLDL+SLQE+AGGGLV
Sbjct:   86 VPIELPTNKNSENLLKIRHTTAHVMAMAVQKLFPETQVTIGPWIDSGFYYDFFNADKQFSEDDLKAIKKEMDRIIKSKLPLRREEVSREEARRRIEAIGEKFKLEILDSIKTEPITIYHIGEEWWDLCAGPHVETTGDLPPKAIQLQNVAGAYWRGDEKREMLQRIYGTAWESPEQLKEHKRLMEEAKRRDHRVLGKKLDLYSLQEEAGGGLV 298
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A7S2V1W5_9STRA (Threonine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W5_9STRA)

HSP 1 Score: 338 bits (866), Expect = 1.030e-108
Identity = 166/211 (78.67%), Postives = 184/211 (87.20%), Query Frame = 1 
Query:  214 ELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEK-KMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            ELPTNE +  LLKIRHT+AHVMAMAVQKLFP  QVTIGPWIDNGFYYDF+H +    TD DLK IKK+MDKII+  LPL REEV+REEA+ RIEALGEPFKLEILDSIKTEPITLYHVG++WWDLCAGPHVE+TG LPPK I+L ++AGAYWRGDE R  LQRIYGTAWE P QLK +K  +VEAK+RDHRVLGKKLDLFSLQE+AGGGLV
Sbjct:   77 ELPTNENNENLLKIRHTTAHVMAMAVQKLFPNVQVTIGPWIDNGFYYDFYHTDGGAFTDEDLKKIKKQMDKIIKADLPLRREEVSREEAKKRIEALGEPFKLEILDSIKTEPITLYHVGEEWWDLCAGPHVESTGKLPPKAIQLDSVAGAYWRGDEKREVLQRIYGTAWEDPPQLKAYKSMLVEAKKRDHRVLGKKLDLFSLQEEAGGGLV 287
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A7S2SSP0_9STRA (Threonine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSP0_9STRA)

HSP 1 Score: 330 bits (845), Expect = 1.100e-105
Identity = 160/210 (76.19%), Postives = 187/210 (89.05%), Query Frame = 1 
Query:  217 LPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFH-EEKKMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            LPTNE S  LL+IRHTSAHVMAMAVQ+LFP  QVTIGPWIDNGFYYDF + +E   T+SDLK IKKEMD+II++KLPL+REEV+R+EAR RIEAL EPFKLEILDSI+TEPIT+YH+GD+WWDLCAGPHVE TG+LPPKGI+LQ++AGAYWRGDE+R  L RIYGTAWE  AQL ++K  + EAK+RDHRVLGKKLDLFS+Q++AGGGLV
Sbjct:   60 LPTNEDSERLLRIRHTSAHVMAMAVQRLFPEVQVTIGPWIDNGFYYDFKNPDEGGFTESDLKAIKKEMDRIIKKKLPLIREEVSRDEARTRIEALNEPFKLEILDSIETEPITIYHIGDEWWDLCAGPHVEHTGELPPKGIQLQSMAGAYWRGDESRDMLTRIYGTAWEDAAQLSQYKAMLEEAKKRDHRVLGKKLDLFSIQDEAGGGLV 269
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A7S1TRI5_9STRA (Threonine--tRNA ligase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI5_9STRA)

HSP 1 Score: 326 bits (836), Expect = 8.790e-105
Identity = 162/217 (74.65%), Postives = 185/217 (85.25%), Query Frame = 1 
Query:  196 AVEVPEELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEKKM-TDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            A   P  LPTNE S  LLKIRH+SAHVMAMAVQ+LFP  QVTIGPWI+ GFYYDFF  + ++ TD DLK IKKEMD+I R++L   REEV+REEARARIEA+GEPFKLEILDSIKTEPIT+YH+GDQWWDLCAGPHVE T  LP K I+L+++ GAYWRGDE+RP LQRIYGTAWES  QLKEHKR M EAK+RDHRVLGKKL+LFS+Q++AGGGLV
Sbjct:   10 APAAPAPLPTNESSERLLKIRHSSAHVMAMAVQRLFPDVQVTIGPWIEKGFYYDFFVPDGRVFTDEDLKKIKKEMDRIGRERLEFRREEVSREEARARIEAIGEPFKLEILDSIKTEPITIYHIGDQWWDLCAGPHVEHTAQLPAKAIQLESVNGAYWRGDESRPMLQRIYGTAWESKDQLKEHKRLMEEAKKRDHRVLGKKLNLFSIQDEAGGGLV 226
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: W7TW93_9STRA (Threonine--tRNA ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TW93_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.580e-104
Identity = 155/210 (73.81%), Postives = 183/210 (87.14%), Query Frame = 1 
Query:  214 ELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEKKMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            +LP+N+ SP LL+IRHTSAHVMAMAVQ+LFP  QVTIGPWI+NGFYYDF   + K T+ DL  IKKEM++II+++LPL REEVTREEAR RIEA+ EP+KLEILD IKTEPIT+YH+GD+WWDLCAGPHVE+TGDLP   I+L++LAGAYWRGDE R  L RIYGTAWES  QLKE++R M EAK+RDHRVLG++LDLFS+QEDAGGGLV
Sbjct:  124 KLPSNDQSPNLLRIRHTSAHVMAMAVQRLFPSVQVTIGPWIENGFYYDFDTGDTKFTEEDLNKIKKEMERIIKKRLPLRREEVTREEARKRIEAMQEPYKLEILDGIKTEPITIYHIGDEWWDLCAGPHVESTGDLPSNAIKLESLAGAYWRGDEKRAMLTRIYGTAWESKEQLKEYQRLMEEAKKRDHRVLGRRLDLFSIQEDAGGGLV 333
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A8J9TD54_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TD54_PHATR)

HSP 1 Score: 317 bits (813), Expect = 3.710e-104
Identity = 154/222 (69.37%), Postives = 184/222 (82.88%), Query Frame = 1 
Query:  214 ELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEK------------KMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            ELPTN+   ELL+IRH+SAHVMAMAVQ++FP  QVTIGPWID+GFYYDFF  E+            K+++ DLK +KK MDKII +  P+ REEV+REEAR RIE +GEPFKLEILDSIKTEPITLYH+GD+WWDLCAGPHV++TG LP K I+LQ++AGAYWRGDENR  LQRIY TAW+ P QLK++K+ + EAK+RDHR+LGKKLDLFS+QEDAGGGLV
Sbjct:   72 ELPTNDNDEELLRIRHSSAHVMAMAVQRIFPEAQVTIGPWIDSGFYYDFFFPERTDEESGETIPARKLSEQDLKDVKKAMDKIIGKDYPISREEVSREEARRRIEKIGEPFKLEILDSIKTEPITLYHIGDEWWDLCAGPHVDSTGKLPKKAIQLQSVAGAYWRGDENREMLQRIYATAWKDPQQLKQYKKMLEEAKKRDHRMLGKKLDLFSIQEDAGGGLV 293
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A4D9D5P2_9STRA (Threonine--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5P2_9STRA)

HSP 1 Score: 325 bits (832), Expect = 5.950e-103
Identity = 156/210 (74.29%), Postives = 183/210 (87.14%), Query Frame = 1 
Query:  214 ELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEKKMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            +LP+N+ SP LL+IRHTSAHVMAMAVQ+LFP  QVTIGPWI+NGFYYDF   + K T+ DL  IKKEM++II+++LPL REEVTREEAR RIEA+ EP+KLEILD IKTEPIT+YH+GD+WWDLCAGPHVE+TGDLP   I+L++LAGAYWRGDE R  L RIYGTAWES  QLKE++R M EAK+RDHRVLG+KLDLFS+QEDAGGGLV
Sbjct:  124 KLPSNDQSPNLLRIRHTSAHVMAMAVQRLFPSVQVTIGPWIENGFYYDFDTGDTKFTEEDLSKIKKEMERIIKKRLPLRREEVTREEARKRIEAMQEPYKLEILDGIKTEPITIYHIGDEWWDLCAGPHVESTGDLPSNAIKLESLAGAYWRGDEKRAMLTRIYGTAWESKEQLKEYQRLMEEAKKRDHRVLGRKLDLFSIQEDAGGGLV 333
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Match: A0A7S0BRC3_9RHOD (Threonine--tRNA ligase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BRC3_9RHOD)

HSP 1 Score: 313 bits (802), Expect = 7.570e-102
Identity = 156/210 (74.29%), Postives = 179/210 (85.24%), Query Frame = 1 
Query:  214 ELPTNEGSPELLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIDNGFYYDFFHEEKKMTDSDLKLIKKEMDKIIRQKLPLLREEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHVETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKRRMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV 843
            ELPTNE + ELL++RHT+AHVMAMAVQ+LFP  QVTIGPWIDNGFYYDF  EE   ++ DLK IKKEMDKIIR+ LPL+REEVTREEA  RI+ + EP+KLEIL+ +K EPITLYH+GD+WWDLCAGPHVE+TG L PK I L+T+AGAYWRGDE R  LQRIYGT WE+P QLKE+KR   EAKRRDHRVLGKKL+LFS QE+AGGGLV
Sbjct:   65 ELPTNENNEELLRMRHTTAHVMAMAVQRLFPNAQVTIGPWIDNGFYYDFDTEEP-FSEDDLKKIKKEMDKIIREDLPLIREEVTREEAEERIKGINEPYKLEILEGLK-EPITLYHLGDKWWDLCAGPHVESTGKLVPKAIALETVAGAYWRGDEKRTMLQRIYGTCWETPQQLKEYKRVKEEAKRRDHRVLGKKLNLFSTQEEAGGGLV 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12280.1958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY5_ECTSI1.960e-14482.52Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JBI8_9PHAE1.780e-14080.35Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A835ZFX3_9STRA4.990e-11580.75Threonine--tRNA ligase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2V1W5_9STRA1.030e-10878.67Threonine--tRNA ligase n=1 Tax=Fibrocapsa japonica... [more]
A0A7S2SSP0_9STRA1.100e-10576.19Threonine--tRNA ligase n=1 Tax=Rhizochromulina mar... [more]
A0A7S1TRI5_9STRA8.790e-10574.65Threonine--tRNA ligase n=2 Tax=Phaeomonas parva Ta... [more]
W7TW93_9STRA1.580e-10473.81Threonine--tRNA ligase n=1 Tax=Nannochloropsis gad... [more]
A0A8J9TD54_PHATR3.710e-10469.37Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A4D9D5P2_9STRA5.950e-10374.29Threonine--tRNA ligase n=1 Tax=Nannochloropsis sal... [more]
A0A7S0BRC3_9RHOD7.570e-10274.29Threonine--tRNA ligase (Fragment) n=1 Tax=Rhodosor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12280contigH-canaliculatus_F_contig12280:129..3571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.2
Seed ortholog evalue6.1e-117
Seed eggNOG ortholog2880.D7FSY5
KEGG rclassRC00055,RC00523
KEGG koko:K01868
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.threonyl-tRNA aminoacylation
EggNOG OGsCOG0441@1,KOG1637@2759
EC6.1.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain
Ec32 orthologEc-27_006860.1
Exons5
Model size843
Cds size843
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12280.1958.1prot_H-canaliculatus_F_contig12280.1958.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12280 129..3571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.250941-CDS-H-canaliculatus_F_contig12280:128..2331622928944.250941-CDS-H-canaliculatus_F_contig12280:128..233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 129..233 -
1696845623.4908845-CDS-H-canaliculatus_F_contig12280:128..2331696845623.4908845-CDS-H-canaliculatus_F_contig12280:128..233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 129..233 -
1622928944.2637484-CDS-H-canaliculatus_F_contig12280:1168..12931622928944.2637484-CDS-H-canaliculatus_F_contig12280:1168..1293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 1169..1293 -
1696845623.5035946-CDS-H-canaliculatus_F_contig12280:1168..12931696845623.5035946-CDS-H-canaliculatus_F_contig12280:1168..1293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 1169..1293 -
1622928944.2952557-CDS-H-canaliculatus_F_contig12280:1691..18371622928944.2952557-CDS-H-canaliculatus_F_contig12280:1691..1837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 1692..1837 -
1696845623.5149791-CDS-H-canaliculatus_F_contig12280:1691..18371696845623.5149791-CDS-H-canaliculatus_F_contig12280:1691..1837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 1692..1837 -
1622928944.3136458-CDS-H-canaliculatus_F_contig12280:2698..28211622928944.3136458-CDS-H-canaliculatus_F_contig12280:2698..2821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 2699..2821 -
1696845623.5264943-CDS-H-canaliculatus_F_contig12280:2698..28211696845623.5264943-CDS-H-canaliculatus_F_contig12280:2698..2821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 2699..2821 -
1622928944.3270104-CDS-H-canaliculatus_F_contig12280:3227..35711622928944.3270104-CDS-H-canaliculatus_F_contig12280:3227..3571Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 3228..3571 -
1696845623.5375297-CDS-H-canaliculatus_F_contig12280:3227..35711696845623.5375297-CDS-H-canaliculatus_F_contig12280:3227..3571Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12280 3228..3571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12280.1958.1

>prot_H-canaliculatus_F_contig12280.1958.1 ID=prot_H-canaliculatus_F_contig12280.1958.1|Name=mRNA_H-canaliculatus_F_contig12280.1958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=281bp
RAHSSVRSLSSSSYRRPPTSTRRSLDVAGSAAGRWATSGADQRRQRRQQR
PRMSTAAPAAAAAPGAVEVPEELPTNEGSPELLKIRHTSAHVMAMAVQKL
FPGTQVTIGPWIDNGFYYDFFHEEKKMTDSDLKLIKKEMDKIIRQKLPLL
REEVTREEARARIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPH
VETTGDLPPKGIELQTLAGAYWRGDENRPALQRIYGTAWESPAQLKEHKR
RMVEAKRRDHRVLGKKLDLFSLQEDAGGGLV
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mRNA from alignment at H-canaliculatus_F_contig12280:129..3571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12280.1958.1 ID=mRNA_H-canaliculatus_F_contig12280.1958.1|Name=mRNA_H-canaliculatus_F_contig12280.1958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3443bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12280:129..3571- (Hapterophycus canaliculatus Oshoro5f female)
AGAGCACACTCGTCGGTCCGGTCTCTCTCTTCCTCCTCCTACCGGCGACC
ACCCACCTCCACGCGACGGTCCCTCGATGTCGCGGGTAGCGCGGCGGGGC
GCTGGGCAACTTCCGGCGCCGACCAGCGGCGCCAGCGGCGCCAGCAGCGG
CCGCGCATGAGCACCGCGGCGCCCGCGGCCGCCGCCGCCCCCGGCGCGGT
AGAGGTGCCGGAGGAGCTGCCCACCAACGAGGGGTCGCCGGAGTTGTTGA
AGATAAGGCACACGTCGGCGCACGTGATGGCCATGGCGGTGCAGAAGCTG
TTCCCGGGGACGCAGGTGACCATCGGGCCGTGGATCGACAACGGGTGAGA
GCCGGAGTCGGGGCCGGAGTTCTCGTGAGAGGGTTTGCCGTGAGGATTCG
GTGGCACGGGGGTTGGTGACTTATCGGTACTCGCAAGGTGTGGGTCTTGG
GAATGGCAAGAAATGTGCGTTTGTGGCCGGTGTCTTTCGGGAGCGTGAGC
CAGGCTCAACCCGCCCCTTCGTACAGAGCACGGTGGCCAAGCGGTATGGC
TGGCATGCTATGCAGGTAGTGCGCTGTTGCTGGTGTGGGCATCGATGTTG
ATGTTGGTCGAAAGCGGCAATCGAAGCGTCAATCTTCTTCGGTTTCTACT
TCTGTAGATCGGTTTGGGGCGGCGGAGATTGTCGAGGTTGTCAACTGCTT
TTTGCTTTTTGTTGGCGCGACGACCGCTGTGTACGTGTGCGCGCTGCCAG
ATTCTATTACGACTTCTTCCATGAGGAGAAGAAGATGACTGATTCGGACC
TGAAGCTCATCAAGAAGGAGATGGACAAGATCATCAGGCAGAAGCTCCCG
CTCCTCAGGGAAGAAGTGACGAGGTGAGCAACTTGGTCGAAGAGCAAAAG
GCAGTCGCTGTGCCGTCCGCGGTTGTTGCACGAAGTCGTGGTCGGTCCGG
AGCACGTGCATGATACAGTAGAGTCACTGAAAATCACAAGTCGAAGCTAG
CGACACAGCAGTTCAGATGCGAACTTGACTGATGATAATGGTGATGGAGG
GGCATCGCTGAGCCCCCACTGCTTCAGCACCGTTGTGCGTCCGTAGACGG
GAGCATCAGTGGCTGGCTAACCACTGGTGATAAGTGGCAGAGCAAATGCT
GCGACACAGACATAAATCGGGGGAGGGGTGCTTGACTTGACGTCGATGAG
GGCCTTTCCGCGTGACCGTCCTGGGTGAGCACTTCGTTCTACGGCGTTGC
ATAAAGAGCAACAATTACTCTCTCGAGTCGGTGATGAAATACCCGGCTCT
GTTCTGCTCGGAATCAGTCCTCGAAATAAGTCTCCTGTGCTCGACGTCGA
GGAAAAGAAAATAGAATTGGGCCGACAAGCGGCCAAGAAAGCTGTTCAGT
TCAGTTCGGACACATGTGTGTTGCTGCGGCAGTCCTGTGTGTTCTCGCTC
TGATCCCCTTTCGTGTGTGCAAAGTTTACGCCGTCATTGTGCGTCTTCCA
GTCGTGAAGGAGGCGATGATTTGAAAGTGCAGGCAGATTTCGATCGAAAC
GCACTCCCGATGAAACCCAGATACAGCAGTCAACCCGGAAGCCGCACTCA
GTCCTGGCGCAATACTAATGCAAACGCAGTGTGGTCCAACCGTAGTCGAA
GTGCAATTTCAGATGCATTCCAAATGCAATCGAAGCATGATAGAATGAAA
TCAAAACGCATGCTTTTTTGGCCAAAACAAAAAGGGAGGAAGCGAGGGCG
CGCATCGAGGCCTTGGGGGAACCCTTCAAGCTGGAGATTCTGGATTCGAT
CAAGACGGAGCCCATCACGCTCTACCACGTGGGCGATCAGTGGTGGGACC
TGTGCGCCGGCCCGCACGTCGAAACCACGGGTGAGGAAGCCTGAGCGTAC
AGTAGCCGCCGCTCTCCAGGCTGGCGCGGTCCCCGCACGAAGATGTGCAC
GTACGAAACCGAGAACGGTGGGGTTTCCATTCCGCCGCGCGCGTGCGGGG
AGCGTCGAGTAGTGTCCCCGTCCTGAGCGCGCCCAGGCGTCTTCCTTCTC
GCGTCGTTTCTCGCCGGGAGAGGAAGGAAGGTAGATAGATAGATGGCCCA
TCTCGCCCGGAGGCGCTGCCCGTGCCCGCATGCCCGTCCTCGCGCGTGTT
TCGAATTTCGGGCGGGGAACGGCCACGGCGGCACTTGCATACCCTACACC
GTGCTTGAATGCACGTTACCTACGCTGCGCTGCATCAGGCTGCGTACGTA
ACAATTCTCAATGCGTTTTACGGTTCAGGCGACTTGCCGCCCAAGGGCAT
CGAACTCCAGACCCTTGCCGGCGCGTACTGGCGCGGAGACGAGAACAGGC
CGGCGCTCCAGAGGATCTATGGCACGGCGTGGGAGAGCCCGGCGCAGTTG
AAGGTGACCACCCGGACGGGCCGACGGCCATGAACGTTGTTGATGTCGGC
GACGCTGTGAAGTAGGCCGCCCGTGCCGTTGACATCGCGGTGATAACTTG
TGTGTTACATGGATTTCGCTTGCGTTGCCGATGGTGCGATTTTGGAGGTG
TTCATTGTGCGGAGGACGTCGGTGGTGGTGGAATTTCAAGCGATGGCATT
CCTTTCGTGCCGATGGATGGTCTGGTGCCAGCGGCGTCATCATTTGTTGT
CGTTTATCGCGTGCCCTCATTCGCGGCGACGGTAATACTGATGGGGTGAT
TCTGCGATTCACGCCATGTATGGTACCGTGTCACGGATTTCGTTTTGTGC
CCTTGATACGTAAGCGATCCTTTGCAGGAATAATTAACCGTGCCGGATAG
ACCAACGAGCCCCTATGAAACCACACCCACAGGTCGAGTGCGTGAAGCAA
CACCTGGTGTCCGTCCCCTTTAAAGAAACTCTCTTGCTGGCTTTTTTGTT
TTTAGGTTCTCGAAGTAAAAGATTTGATCCCGAAATCCAGCTTATTCGCT
CGCACGAAGGTTTCCGTAGGTCCAAACGATGGCGCTGAAGACTTCCATGA
GTGTCACGTCTGCTCCGTTCACACCTCAAAAAGAGTGGTGTCGAGTACAT
GTCGTGATAAGCCTTCCAAAGGTCGGGTCTTAGACGCCGGCTGCAAGTAC
GCCTACGCTTGGGTCGTCGATATATCCAGCGGCGATCGACACGGCGTCCT
GGGGTGGCCATGTGGTATCGATCGTGTCCCGCGCGACGACCCGTTCGGTG
CACGCGCAGTCAGGTTTGCTTGTTCATTCCCGCCGCATGTGCAAGTCCGA
GGTCAGCAAGTCACGAGAGCAGCCGCTCCCTGCCCCCCCGCGATCTCGGT
CATCGCCGCGTTTTTCTCGGGCGTTGTTCGGACAACAGGAGCACAAGCGC
AGGATGGTGGAGGCGAAGAGAAGAGACCACCGCGTCTTGGGCAAGAAGCT
AGACTTGTTTTCTCTCCAGGAGGACGCCGGCGGGGGGTTGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12280:129..3571-

>mRNA_H-canaliculatus_F_contig12280.1958.1 ID=mRNA_H-canaliculatus_F_contig12280.1958.1|Name=mRNA_H-canaliculatus_F_contig12280.1958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1686bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12280:129..3571- (Hapterophycus canaliculatus Oshoro5f female)
AGAGCACACTCGTCGGTCCGGTCTCTCTCTTCCTCCTCCTACCGGCGACC
ACCCACCTCCACGCGACGGTCCCTCGATGTCGCGGGTAGCGCGGCGGGGC
GCTGGGCAACTTCCGGCGCCGACCAGCGGCGCCAGCGGCGCCAGCAGCGG
CCGCGCATGAGCACCGCGGCGCCCGCGGCCGCCGCCGCCCCCGGCGCGGT
AGAGGTGCCGGAGGAGCTGCCCACCAACGAGGGGTCGCCGGAGTTGTTGA
AGATAAGGCACACGTCGGCGCACGTGATGGCCATGGCGGTGCAGAAGCTG
TTCCCGGGGACGCAGGTGACCATCGGGCCGTGGATCGACAACGGAGAGCA
CACTCGTCGGTCCGGTCTCTCTCTTCCTCCTCCTACCGGCGACCACCCAC
CTCCACGCGACGGTCCCTCGATGTCGCGGGTAGCGCGGCGGGGCGCTGGG
CAACTTCCGGCGCCGACCAGCGGCGCCAGCGGCGCCAGCAGCGGCCGCGC
ATGAGCACCGCGGCGCCCGCGGCCGCCGCCGCCCCCGGCGCGGTAGAGGT
GCCGGAGGAGCTGCCCACCAACGAGGGGTCGCCGGAGTTGTTGAAGATAA
GGCACACGTCGGCGCACGTGATGGCCATGGCGGTGCAGAAGCTGTTCCCG
GGGACGCAGGTGACCATCGGGCCGTGGATCGACAACGGATTCTATTACGA
CTTCTTCCATGAGGAGAAGAAGATGACTGATTCGGACCTGAAGCTCATCA
AGAAGGAGATGGACAAGATCATCAGGCAGAAGCTCCCGCTCCTCAGGGAA
GAAGTGACGAGATTCTATTACGACTTCTTCCATGAGGAGAAGAAGATGAC
TGATTCGGACCTGAAGCTCATCAAGAAGGAGATGGACAAGATCATCAGGC
AGAAGCTCCCGCTCCTCAGGGAAGAAGTGACGAGGGAGGAAGCGAGGGCG
CGCATCGAGGCCTTGGGGGAACCCTTCAAGCTGGAGATTCTGGATTCGAT
CAAGACGGAGCCCATCACGCTCTACCACGTGGGCGATCAGTGGTGGGACC
TGTGCGCCGGCCCGCACGTCGAAACCACGGGGAGGAAGCGAGGGCGCGCA
TCGAGGCCTTGGGGGAACCCTTCAAGCTGGAGATTCTGGATTCGATCAAG
ACGGAGCCCATCACGCTCTACCACGTGGGCGATCAGTGGTGGGACCTGTG
CGCCGGCCCGCACGTCGAAACCACGGGCGACTTGCCGCCCAAGGGCATCG
AACTCCAGACCCTTGCCGGCGCGTACTGGCGCGGAGACGAGAACAGGCCG
GCGCTCCAGAGGATCTATGGCACGGCGTGGGAGAGCCCGGCGCAGTTGAA
GGCGACTTGCCGCCCAAGGGCATCGAACTCCAGACCCTTGCCGGCGCGTA
CTGGCGCGGAGACGAGAACAGGCCGGCGCTCCAGAGGATCTATGGCACGG
CGTGGGAGAGCCCGGCGCAGTTGAAGGAGCACAAGCGCAGGATGGTGGAG
GCGAAGAGAAGAGACCACCGCGTCTTGGGCAAGAAGCTAGACTTGTTTTC
TCTCCAGGAGGACGCCGGCGGGGGGTTGGTGGAGCACAAGCGCAGGATGG
TGGAGGCGAAGAGAAGAGACCACCGCGTCTTGGGCAAGAAGCTAGACTTG
TTTTCTCTCCAGGAGGACGCCGGCGGGGGGTTGGTG
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