mRNA_H-canaliculatus_F_contig1228.1957.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1228.1957.1
Unique NamemRNA_H-canaliculatus_F_contig1228.1957.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1228.1957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1228contigH-canaliculatus_F_contig1228:18155..18953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.8647954-CDS-H-canaliculatus_F_contig1228:18156..182401622928943.8647954-CDS-H-canaliculatus_F_contig1228:18156..18240Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 18157..18240 -
1696845623.2744515-CDS-H-canaliculatus_F_contig1228:18156..182401696845623.2744515-CDS-H-canaliculatus_F_contig1228:18156..18240Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 18157..18240 -
1622928943.8794837-CDS-H-canaliculatus_F_contig1228:18866..189531622928943.8794837-CDS-H-canaliculatus_F_contig1228:18866..18953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 18867..18953 -
1696845623.2871547-CDS-H-canaliculatus_F_contig1228:18866..189531696845623.2871547-CDS-H-canaliculatus_F_contig1228:18866..18953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 18867..18953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1228.1957.1prot_H-canaliculatus_F_contig1228.1957.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1228 18157..18953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1228.1957.1

>prot_H-canaliculatus_F_contig1228.1957.1 ID=prot_H-canaliculatus_F_contig1228.1957.1|Name=mRNA_H-canaliculatus_F_contig1228.1957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
DRHRLLLRLLSWAERRMREDEQGTNGPEKGTGQQKSTATKFAADKGANRR
RPYHPRE
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mRNA from alignment at H-canaliculatus_F_contig1228:18155..18953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1228.1957.1 ID=mRNA_H-canaliculatus_F_contig1228.1957.1|Name=mRNA_H-canaliculatus_F_contig1228.1957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=799bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1228:18155..18953- (Hapterophycus canaliculatus Oshoro5f female)
GACCGTCACAGACTTCTGCTCCGCTTGCTGTCGTGGGCGGAAAGGCGGAT
GAGAGAAGATGAGCAAGGGACAAACGGGCCGGAAAAGGTACGGCATAAGA
TGGGGACAGCGGCAAAATATTTGTTACGTGGGCTCTTTTCGGATTGTCTC
AGTAGGGCGATAAGGGCGGAATCATACGGCATCTACACACCTCACGAACA
GCAACGCTTCGTCCTGATGCTGCCTTTCACTCAGTTCTGTGTGCGCATGG
GCCGCCGACGTGTTTCGATGCCAACACGATGAGAGAAATAGACCGGACGA
AATCACAAGTGTGTTGGCGCATCAGATCTACGGACCTGCTGGATACGTGC
AACGAGGCACGCCGTATCTCACCTCCTCCGGGCTAGGCTTGAGGGGGGTC
ATGTTGATGAGCGACTCCGTTATAGCCTCCACGCTCGGTGCGATACCGTT
CAGCACGGGGAGGCCGGCCAAACACATGTAGACGCTCTGCAGTACGAGCA
GGAAAGTTTGGGGGGTGAGGTGGGGCGGAGGGGAGCGGGGCCGATACACT
AGGTGAGTCCAGAAGGGAGCCAAAAACCAAGCGCATATCCCGACGAAAAC
AGGGTGTTTTGATCTCAATCGACTCGAACACAAGAAGCGCCAAGCCGTTG
CCAAGACAAGCTCCCTAAGTTAACGTTGATCAAAGGCTCAAGGCCTTTAC
CCGTGCTGTCCAGGGAACAGGACAACAAAAATCTACGGCCACCAAATTCG
CAGCAGACAAGGGCGCCAATCGACGTCGGCCTTACCACCCTAGAGAAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1228:18155..18953-

>mRNA_H-canaliculatus_F_contig1228.1957.1 ID=mRNA_H-canaliculatus_F_contig1228.1957.1|Name=mRNA_H-canaliculatus_F_contig1228.1957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1228:18155..18953- (Hapterophycus canaliculatus Oshoro5f female)
GACCGTCACAGACTTCTGCTCCGCTTGCTGTCGTGGGCGGAAAGGCGGAT
GAGAGAAGATGAGCAAGGGACAAACGGGCCGGAAAAGGACCGTCACAGAC
TTCTGCTCCGCTTGCTGTCGTGGGCGGAAAGGCGGATGAGAGAAGATGAG
CAAGGGACAAACGGGCCGGAAAAGGGAACAGGACAACAAAAATCTACGGC
CACCAAATTCGCAGCAGACAAGGGCGCCAATCGACGTCGGCCTTACCACC
CTAGAGAAGGAACAGGACAACAAAAATCTACGGCCACCAAATTCGCAGCA
GACAAGGGCGCCAATCGACGTCGGCCTTACCACCCTAGAGAA
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