mRNA_H-canaliculatus_F_contig1228.1956.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1228.1956.1
Unique NamemRNA_H-canaliculatus_F_contig1228.1956.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1228.1956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1228contigH-canaliculatus_F_contig1228:9321..9924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size583
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1228.1956.1prot_H-canaliculatus_F_contig1228.1956.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1228 9505..9924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.779141-UTR-H-canaliculatus_F_contig1228:9320..95041622928943.779141-UTR-H-canaliculatus_F_contig1228:9320..9504Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1228 9321..9504 +
1696845623.2457964-UTR-H-canaliculatus_F_contig1228:9320..95041696845623.2457964-UTR-H-canaliculatus_F_contig1228:9320..9504Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1228 9321..9504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.794916-CDS-H-canaliculatus_F_contig1228:9504..96001622928943.794916-CDS-H-canaliculatus_F_contig1228:9504..9600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 9505..9600 +
1696845623.2548738-CDS-H-canaliculatus_F_contig1228:9504..96001696845623.2548738-CDS-H-canaliculatus_F_contig1228:9504..9600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 9505..9600 +
1622928943.8126698-CDS-H-canaliculatus_F_contig1228:9621..99241622928943.8126698-CDS-H-canaliculatus_F_contig1228:9621..9924Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 9622..9924 +
1696845623.2642262-CDS-H-canaliculatus_F_contig1228:9621..99241696845623.2642262-CDS-H-canaliculatus_F_contig1228:9621..9924Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1228 9622..9924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1228.1956.1

>prot_H-canaliculatus_F_contig1228.1956.1 ID=prot_H-canaliculatus_F_contig1228.1956.1|Name=mRNA_H-canaliculatus_F_contig1228.1956.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=133bp
MRVERLHRTTGANLGVEERPALLPWTQAHHAFFGLVGTAEKADVGGVVVV
VDVVVVAVRSRCTTIANRPGLNLASSCMTGHPNRSEGREKTRPMYNDDCL
GWGPCPNPGTRCRKGSSSLALVPPALSLTTTA*
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mRNA from alignment at H-canaliculatus_F_contig1228:9321..9924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1228.1956.1 ID=mRNA_H-canaliculatus_F_contig1228.1956.1|Name=mRNA_H-canaliculatus_F_contig1228.1956.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=604bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1228:9321..9924+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGTGTTGAGGCGTGAGAGATCAGGTCACACGGGCAGAGTCCTGACGTG
AAACCCATGCAGAAGGGTCGCCGCCAACTTGTTTTGGGCGGCAACAGCAA
CTATAGATTGGCGAGGACGGTTGAAGATTCGTCAGGTCGTGAGGTCCACC
CAGGCGCGTCAGCGCTGGGCGTGATGGAAGCGTGATGCGTGTCGAAAGGC
TACACCGCACTACAGGGGCCAATCTCGGCGTAGAAGAACGACCAGCGCTT
TTGCCGTGGACTCAAGCACACCATGCTTTTGTAAGAAGCACGAAAGAACA
GTTTGGACTCGTAGGTACAGCTGAAAAAGCAGATGTTGGCGGTGTTGTTG
TTGTCGTCGATGTCGTAGTCGTCGCCGTTCGTAGTCGGTGTACCACAATC
GCGAACCGTCCTGGCCTCAACCTAGCATCTAGCTGCATGACCGGACACCC
AAACCGATCAGAAGGGCGAGAGAAGACACGCCCTATGTACAACGACGATT
GTCTAGGTTGGGGGCCCTGTCCAAACCCAGGCACGCGATGCAGGAAGGGC
TCGTCCTCCCTCGCTCTCGTCCCACCCGCACTCTCTCTCACCACAACGGC
GTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1228:9321..9924+

>mRNA_H-canaliculatus_F_contig1228.1956.1 ID=mRNA_H-canaliculatus_F_contig1228.1956.1|Name=mRNA_H-canaliculatus_F_contig1228.1956.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1228:9321..9924+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTGTCGAAAGGCTACACCGCACTACAGGGGCCAATCTCGGCGTAGA
AGAACGACCAGCGCTTTTGCCGTGGACTCAAGCACACCATGCTTTTATGC
GTGTCGAAAGGCTACACCGCACTACAGGGGCCAATCTCGGCGTAGAAGAA
CGACCAGCGCTTTTGCCGTGGACTCAAGCACACCATGCTTTTTTTGGACT
CGTAGGTACAGCTGAAAAAGCAGATGTTGGCGGTGTTGTTGTTGTCGTCG
ATGTCGTAGTCGTCGCCGTTCGTAGTCGGTGTACCACAATCGCGAACCGT
CCTGGCCTCAACCTAGCATCTAGCTGCATGACCGGACACCCAAACCGATC
AGAAGGGCGAGAGAAGACACGCCCTATGTACAACGACGATTGTCTAGGTT
GGGGGCCCTGTCCAAACCCAGGCACGCGATGCAGGAAGGGCTCGTCCTCC
CTCGCTCTCGTCCCACCCGCACTCTCTCTCACCACAACGGCGTAGTTTGG
ACTCGTAGGTACAGCTGAAAAAGCAGATGTTGGCGGTGTTGTTGTTGTCG
TCGATGTCGTAGTCGTCGCCGTTCGTAGTCGGTGTACCACAATCGCGAAC
CGTCCTGGCCTCAACCTAGCATCTAGCTGCATGACCGGACACCCAAACCG
ATCAGAAGGGCGAGAGAAGACACGCCCTATGTACAACGACGATTGTCTAG
GTTGGGGGCCCTGTCCAAACCCAGGCACGCGATGCAGGAAGGGCTCGTCC
TCCCTCGCTCTCGTCCCACCCGCACTCTCTCTCACCACAACGGCGTAG
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