prot_H-canaliculatus_F_contig12276.1952.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12276.1952.1
Unique Nameprot_H-canaliculatus_F_contig12276.1952.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length53
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12276.1952.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.210e-16
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0 
Query:    2 CARALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAESSS 44
            CA+ALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAE+SS
Sbjct:  895 CAKALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS 937
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12276.1952.1 vs. uniprot
Match: A0A4D9CZ35_9STRA (Bromo domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ35_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.590e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0 
Query:    6 LGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAES 42
            LG+EVIEVN SQLRSG  I++LF EATQS H+  A S
Sbjct:  653 LGFEVIEVNTSQLRSGVEIKKLFSEATQSQHIRQASS 689
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12276.1952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH97_ECTSI2.210e-1695.35Similar to chromosome fragility associated gene 1 ... [more]
A0A4D9CZ35_9STRA4.590e-667.57Bromo domain-containing protein n=2 Tax=Monodopsid... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..51
e-value: 2.9E-9
score: 39.2
NoneNo IPR availablePANTHERPTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18coord: 2..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12276contigH-canaliculatus_F_contig12276:836..994 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12276.1952.1mRNA_H-canaliculatus_F_contig12276.1952.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12276 836..994 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12276.1952.1 ID=prot_H-canaliculatus_F_contig12276.1952.1|Name=mRNA_H-canaliculatus_F_contig12276.1952.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=53bp
SCARALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAESSSLAPPGS
YSS
back to top