mRNA_H-canaliculatus_F_contig12270.1947.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12270.1947.1
Unique NamemRNA_H-canaliculatus_F_contig12270.1947.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12270.1947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12270contigH-canaliculatus_F_contig12270:2970..3300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.2126594-CDS-H-canaliculatus_F_contig12270:2969..32991622928943.2126594-CDS-H-canaliculatus_F_contig12270:2969..3299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12270 2970..3299 +
1696845622.058741-CDS-H-canaliculatus_F_contig12270:2969..32991696845622.058741-CDS-H-canaliculatus_F_contig12270:2969..3299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12270 2970..3299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12270.1947.1prot_H-canaliculatus_F_contig12270.1947.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12270 2970..3299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12270.1947.1

>prot_H-canaliculatus_F_contig12270.1947.1 ID=prot_H-canaliculatus_F_contig12270.1947.1|Name=mRNA_H-canaliculatus_F_contig12270.1947.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
GTCTEVIVRRHQRPPKVEPYSPQVRRCGRIQLFETSTSRVERFRRICHTL
APPRCTLGPHETKCRCGVSPRLAPFNNRNCIAHTSFSMTFSSHLSSSDAA
ADAAASPSFA
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mRNA from alignment at H-canaliculatus_F_contig12270:2970..3300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12270.1947.1 ID=mRNA_H-canaliculatus_F_contig12270.1947.1|Name=mRNA_H-canaliculatus_F_contig12270.1947.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=331bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12270:2970..3300+ (Hapterophycus canaliculatus Oshoro5f female)
GGTACATGTACCGAGGTCATCGTGAGGCGACACCAGCGACCGCCAAAAGT
CGAGCCCTATTCACCCCAGGTGAGACGGTGTGGTAGAATACAACTATTTG
AGACGAGCACATCCCGTGTAGAACGGTTCCGACGGATTTGCCACACACTG
GCTCCGCCGCGTTGTACCCTTGGGCCACACGAAACAAAATGCCGATGCGG
CGTGTCTCCTCGTTTGGCCCCGTTCAATAATCGAAATTGCATTGCTCATA
CCTCGTTCTCGATGACATTCTCCTCCCATCTCTCCTCCTCCGACGCCGCT
GCTGATGCTGCCGCCAGCCCCTCGTTCGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12270:2970..3300+

>mRNA_H-canaliculatus_F_contig12270.1947.1 ID=mRNA_H-canaliculatus_F_contig12270.1947.1|Name=mRNA_H-canaliculatus_F_contig12270.1947.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12270:2970..3300+ (Hapterophycus canaliculatus Oshoro5f female)
GGTACATGTACCGAGGTCATCGTGAGGCGACACCAGCGACCGCCAAAAGT
CGAGCCCTATTCACCCCAGGTGAGACGGTGTGGTAGAATACAACTATTTG
AGACGAGCACATCCCGTGTAGAACGGTTCCGACGGATTTGCCACACACTG
GCTCCGCCGCGTTGTACCCTTGGGCCACACGAAACAAAATGCCGATGCGG
CGTGTCTCCTCGTTTGGCCCCGTTCAATAATCGAAATTGCATTGCTCATA
CCTCGTTCTCGATGACATTCTCCTCCCATCTCTCCTCCTCCGACGCCGCT
GCTGATGCTGCCGCCAGCCCCTCGTTCGCTGGTACATGTACCGAGGTCAT
CGTGAGGCGACACCAGCGACCGCCAAAAGTCGAGCCCTATTCACCCCAGG
TGAGACGGTGTGGTAGAATACAACTATTTGAGACGAGCACATCCCGTGTA
GAACGGTTCCGACGGATTTGCCACACACTGGCTCCGCCGCGTTGTACCCT
TGGGCCACACGAAACAAAATGCCGATGCGGCGTGTCTCCTCGTTTGGCCC
CGTTCAATAATCGAAATTGCATTGCTCATACCTCGTTCTCGATGACATTC
TCCTCCCATCTCTCCTCCTCCGACGCCGCTGCTGATGCTGCCGCCAGCCC
CTCGTTCGCT
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