mRNA_H-canaliculatus_F_contig12269.1944.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12269.1944.1
Unique NamemRNA_H-canaliculatus_F_contig12269.1944.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12269.1944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12269contigH-canaliculatus_F_contig12269:673..2809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size427
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12269.1944.1prot_H-canaliculatus_F_contig12269.1944.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12269 827..2809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.4049594-UTR-H-canaliculatus_F_contig12269:672..8261622928942.4049594-UTR-H-canaliculatus_F_contig12269:672..826Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12269 673..826 +
1696845621.6862395-UTR-H-canaliculatus_F_contig12269:672..8261696845621.6862395-UTR-H-canaliculatus_F_contig12269:672..826Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12269 673..826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.4223692-CDS-H-canaliculatus_F_contig12269:826..8381622928942.4223692-CDS-H-canaliculatus_F_contig12269:826..838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 827..838 +
1696845621.695263-CDS-H-canaliculatus_F_contig12269:826..8381696845621.695263-CDS-H-canaliculatus_F_contig12269:826..838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 827..838 +
1622928942.4362836-CDS-H-canaliculatus_F_contig12269:2548..28091622928942.4362836-CDS-H-canaliculatus_F_contig12269:2548..2809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 2549..2809 +
1696845621.7078354-CDS-H-canaliculatus_F_contig12269:2548..28091696845621.7078354-CDS-H-canaliculatus_F_contig12269:2548..2809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 2549..2809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12269.1944.1

>prot_H-canaliculatus_F_contig12269.1944.1 ID=prot_H-canaliculatus_F_contig12269.1944.1|Name=mRNA_H-canaliculatus_F_contig12269.1944.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
METMQGVSMRVNGRRKSTIFSPHGRAEGGVVAAGGRVRSTSGARGACSCC
GGTARPVLPVPYVQDLYCVHDRKRYPTVDASSTLQSGGQY*
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mRNA from alignment at H-canaliculatus_F_contig12269:673..2809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12269.1944.1 ID=mRNA_H-canaliculatus_F_contig12269.1944.1|Name=mRNA_H-canaliculatus_F_contig12269.1944.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2137bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12269:673..2809+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGAGAACACGCCATCGCGAGCAAGTGCAGTAGCCATGACTGTCTGCGT
GCAAATAGAGGGCCGCCCAAGGCGGATCGCTGGAAGAACGTGACTTCGAG
AAAGCCAACATTACTTCCGGGTCTTCGAACGCCATTGAGAAGCGAAGGGC
CACCATGGAGACAATGGTGAGCATAGAGGCGGCAGGGTCCTTTTGCTCTT
AGGGTGATTGTATTGCTGTGTTTCTTGTGCAGCACAATCTGGGAGCTCAT
ACTGTACAAGAACTCAAGGAGCATCTCCGGCGAATCCACCAGAAGACGCT
GACCTGACCTCTACGACAGATGCGCCCCGAGATTCCTGATGTGTGTGCTG
CGTACTGTCAAAGTTCACCCAGGCGTGTTGGGAGTTCCAGAGAGAAGAGA
ACGAAATGACTTGGAGAGAGAAATGATGAGGATGCGAGAGAAATGATAAG
GATGCGTGCGTCTCCGTCTCTCTCTGTCTCTCTCTCTCTCGGATGGCTGA
TGGTCTGTCAAGTTCAGCGCCCGGCGCCCTAACTAAAGCGTTGTACCGCA
CCAGGCACACGTCTCCTACCGCTTCCCGAAACATGCTGTTCATTCCACCG
TCCACTCTTACCCACAGCTCACCGTGACTCCGCCTGCTGGTGGTGTGCGT
GATGTTGGTTTTGTGGTCTTTTGGTCTGCACGTCTGCACACTGCACACAA
ACGTCCGAGGGCGGCCCGGACTCAAGTGAATCCCACCGCCTTTTTCTTTT
TTCTTGATCACGAGATCGAGACATCCCAAGTTTCTCCGCCAGGTACGATT
GAATTTGAACCTTGGTCGGGTCTGTCGGTAGCACCATGCTGAGCACGTCG
TGAAGAAGAAAATGTGAAAAAGTAGGATATTCAAGTACAAGGTCTAGATA
TGAACCTATATGTTGTGGCGCAAGAGACAGAACGCGATGGGTGCAGAGTG
CAGAGTGCAGAGGGTAAGTTTGGTCTCCACATTCCGGAAGGTCACCGCAC
ACGTGGTGAAAGGACTTTTTGGAAGGATGGGAACGGGAGATGGGACCCGA
CCCGATGACCTGATACCTTGACACGGCGTGATGTGGTGGTTCCTGAGTTA
TTCCTGTTCATATCGCCCCTACAACGAACGACCGGTTTCGCAACCGACCG
GAATTTCATTTTTGCAGCGGCGAACTCTCACCAATTCTCTCCCCTCTCTG
CTCTCTACTACAACATCAGGGGAGGTACAGGGGAGAGCCCACAGCTAGCG
CATACAGACGGGGTGGGGGTGGAGCACACGGACAGGTTGGGGCAGATCAT
GGCTGGATTCGTTGCAGCTAACAAGAATACCGTGTTCATCATAGCTTCAA
TCCTCAAACTGGTAGGATTTCAAGGGGTCCGGAGCCGAAAGGCTACCCGT
TGAGCAGAAGCTGGAGACCGTATCCATGTCGAGGGAAAACAACATGAAGA
CAGCAAGCCTGCCGCCTCCGATACATTCCAGAAAGCGGAACGCACAAAAC
GAAAGCAAAGCAAGACCGCATTCGAACAGCCCGCGCCAGAAATCCAGCCT
TCCAGAGAGAGAGATCCACACTACTGTAAATATAGGTAGGACTGCAGGAT
GCGGAACGATCGGCGCGTATCATACACAACACGCGCTACGGACGGGAGGG
AGGGGCTCGTCTTTGGGACAGATCGCGCTGTATGATAAGAGCTGCTCGGG
CACTACGCGAGAACCAAGAAGATCACCAAGAGATTGTTGTTGCAGTGCGA
CAAAGCAATAGGACCGTCAGTATAATAACACATTTTCAAGCCCCGGCTCC
AACCCCCATCTTCCTTCCAACGCCGCCCCCCGTACTTGTACACGCGTTGG
TTCGCCGTGGTCATGACGACGAGTAGCAGGGTGTGAGCATGAGAGTGAAT
GGCAGAAGAAAGAGCACTATCTTCTCTCCTCACGGAAGAGCAGAAGGAGG
CGTCGTCGCGGCGGGAGGCAGGGTACGCTCCACGTCTGGAGCGAGGGGCG
CTTGCAGCTGCTGCGGGGGCACCGCTCGTCCTGTTCTTCCCGTGCCATAC
GTCCAAGACCTGTATTGTGTACATGACAGAAAACGATACCCTACCGTAGA
CGCGTCGTCTACATTACAGAGCGGAGGACAATATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12269:673..2809+

>mRNA_H-canaliculatus_F_contig12269.1944.1 ID=mRNA_H-canaliculatus_F_contig12269.1944.1|Name=mRNA_H-canaliculatus_F_contig12269.1944.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12269:673..2809+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGACAATGATGGAGACAATGCAGGGTGTGAGCATGAGAGTGAATGG
CAGAAGAAAGAGCACTATCTTCTCTCCTCACGGAAGAGCAGAAGGAGGCG
TCGTCGCGGCGGGAGGCAGGGTACGCTCCACGTCTGGAGCGAGGGGCGCT
TGCAGCTGCTGCGGGGGCACCGCTCGTCCTGTTCTTCCCGTGCCATACGT
CCAAGACCTGTATTGTGTACATGACAGAAAACGATACCCTACCGTAGACG
CGTCGTCTACATTACAGAGCGGAGGACAATATTGACAGGGTGTGAGCATG
AGAGTGAATGGCAGAAGAAAGAGCACTATCTTCTCTCCTCACGGAAGAGC
AGAAGGAGGCGTCGTCGCGGCGGGAGGCAGGGTACGCTCCACGTCTGGAG
CGAGGGGCGCTTGCAGCTGCTGCGGGGGCACCGCTCGTCCTGTTCTTCCC
GTGCCATACGTCCAAGACCTGTATTGTGTACATGACAGAAAACGATACCC
TACCGTAGACGCGTCGTCTACATTACAGAGCGGAGGACAATATTGA
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