mRNA_H-canaliculatus_F_contig12269.1943.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12269.1943.1
Unique NamemRNA_H-canaliculatus_F_contig12269.1943.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12269.1943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12269contigH-canaliculatus_F_contig12269:248..1446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size374
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12269.1943.1prot_H-canaliculatus_F_contig12269.1943.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12269 400..1446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.3256083-UTR-H-canaliculatus_F_contig12269:247..3991622928942.3256083-UTR-H-canaliculatus_F_contig12269:247..399Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12269 248..399 -
1696845621.654144-UTR-H-canaliculatus_F_contig12269:247..3991696845621.654144-UTR-H-canaliculatus_F_contig12269:247..399Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12269 248..399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.3407133-CDS-H-canaliculatus_F_contig12269:399..4691622928942.3407133-CDS-H-canaliculatus_F_contig12269:399..469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 400..469 -
1696845621.6631927-CDS-H-canaliculatus_F_contig12269:399..4691696845621.6631927-CDS-H-canaliculatus_F_contig12269:399..469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 400..469 -
1622928942.3617406-CDS-H-canaliculatus_F_contig12269:1294..14461622928942.3617406-CDS-H-canaliculatus_F_contig12269:1294..1446Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 1295..1446 -
1696845621.6726596-CDS-H-canaliculatus_F_contig12269:1294..14461696845621.6726596-CDS-H-canaliculatus_F_contig12269:1294..1446Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12269 1295..1446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12269.1943.1

>prot_H-canaliculatus_F_contig12269.1943.1 ID=prot_H-canaliculatus_F_contig12269.1943.1|Name=mRNA_H-canaliculatus_F_contig12269.1943.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
MSRSRDQEKRKRRWDSLESGPPSDVCVQCADVQTKRPQNQHHAHHQQAES
RIFHLSGNNRRALLCCGGCGSSA*
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mRNA from alignment at H-canaliculatus_F_contig12269:248..1446-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12269.1943.1 ID=mRNA_H-canaliculatus_F_contig12269.1943.1|Name=mRNA_H-canaliculatus_F_contig12269.1943.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1199bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12269:248..1446- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCGATCTCGTGATCAAGAAAAAAGAAAAAGGCGGTGGGATTCACT
TGAGTCCGGGCCGCCCTCGGACGTTTGTGTGCAGTGTGCAGACGTGCAGA
CCAAAAGACCACAAAACCAACATCACGCACACCACCAGCAGGCGGAGTCA
CGGTGAGCTGTGGGTAAGAGTGGACGGTGGAATGAACAGCATGTTTCGGG
AAGCGGTAGGAGACGTGTGCCTGGTGCGGTACAACGCTTTAGTTAGGGCG
CCGGGCGCTGAACTTGACAGACCATCAGCCATCCGAGAGAGAGAGAGACA
GAGAGAGACGGAGACGCACGCATCCTTATCATTTCTCTCGCATCCTCATC
ATTTCTCTCTCCAAGTCATTTCGTTCTCTTCTCTCTGGAACTCCCAACAC
GCCTGGGTGAACTTTGACAGTACGCAGCACACACATCAGGAATCTCGGGG
CGCATCTGTCGTAGAGGTCAGGTCAGCGTCTTCTGGTGGATTCGCCGGAG
ATGCTCCTTGAGTTCTTGTACAGTATGAGCTCCCAGATTGTGCTGCACAA
GAAACACAGCAATACAATCACCCTAAGAGCAAAAGGACCCTGCCGCCTCT
ATGCTCACCATTGTCTCCATGGTGGCCCTTCGCTTCTCAATGGCGTTCGA
AGACCCGGAAGTAATGTTGGCTTTCTCGAAGTCACGTTCTTCCAGCGATC
CGCCTTGGGCGGCCCTCTATTTGCACGCAGACAGTCATGGCTACTGCACT
TGCTCGCGATGGCGTGTTCTCGACACCCACCACGGCACGGACTGATGTGC
GAGTAGTGACACGGTCCGGAAGGTCTTTCGCTGGGGCCTGTTTTGTTCTC
TGCCGCTTTCCACCTGCTTTGAGAAATGTTAGTGTTTGCATGAGAGACCG
CTCAGCACTGTTGCCTCTCTCGTGATGCTGTTGTTCCGTCTTTTGTCTTT
TGAAGTCCGCTGTGCTGCTGTATACAGCATCTTTCATCTTTCAGGAAATA
ACAGGCGGGCCTTGCTATGTTGCGGAGGCTGTGGCAGCAGCGCTTAGTCG
TACCAGCAGGGCACAGTCGTCATGGAGATGCCGATACTGCTGTAGCTATT
AAGGTAAAACAGAAAGGCTCCCGCCACTTGACTGGATTCGTGAGCGGCAG
TTGGAACAACTCAAAAGCCGAAGACGAGAGGGATGACGACAGGGGAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12269:248..1446-

>mRNA_H-canaliculatus_F_contig12269.1943.1 ID=mRNA_H-canaliculatus_F_contig12269.1943.1|Name=mRNA_H-canaliculatus_F_contig12269.1943.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12269:248..1446- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCGATCTCGTGATCAAGAAAAAAGAAAAAGGCGGTGGGATTCACT
TGAGTCCGGGCCGCCCTCGGACGTTTGTGTGCAGTGTGCAGACGTGCAGA
CCAAAAGACCACAAAACCAACATCACGCACACCACCAGCAGGCGGAGTCA
CGATGTCTCGATCTCGTGATCAAGAAAAAAGAAAAAGGCGGTGGGATTCA
CTTGAGTCCGGGCCGCCCTCGGACGTTTGTGTGCAGTGTGCAGACGTGCA
GACCAAAAGACCACAAAACCAACATCACGCACACCACCAGCAGGCGGAGT
CACGCATCTTTCATCTTTCAGGAAATAACAGGCGGGCCTTGCTATGTTGC
GGAGGCTGTGGCAGCAGCGCTTAGCATCTTTCATCTTTCAGGAAATAACA
GGCGGGCCTTGCTATGTTGCGGAGGCTGTGGCAGCAGCGCTTAG
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