mRNA_H-canaliculatus_F_contig12262.1941.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12262.1941.1
Unique NamemRNA_H-canaliculatus_F_contig12262.1941.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12262.1941.1 vs. uniprot
Match: D8LJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU4_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.430e-22
Identity = 147/313 (46.96%), Postives = 166/313 (53.04%), Query Frame = 1 
Query:  196 GEAVPDPTPDDVHSLTARLMLRCWNAVGEKLAAARKVVTEVGA------------EAGTAAPRRVASAENGLPSK--GARGPRGGLRSGDGXXXXXXXXXXXKGEAAMDVDGGXDSDYSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVPVERLDWPSTVIPRTPYDVPLLLSCLSTYPDKARTRSALEREGARPRKDVVGXXXXXXWELTTELLLPELRREEILREAKLQDRARCEQTE 1092
            GE +   +  DVH+LTA+ MLRCWNAV E+LAAAR VV EV A                        AE+G P    G +GPRGG+R   G           KG  A+D+D   DSD SS                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   +VVPVERLDWPSTVIPRTPY VPLLLSCLSTYPDK           +              WEL+++LL P LR++E++REA LQDRARCEQTE
Sbjct:  531 GEGLLLGSNPDVHALTAQSMLRCWNAVRERLAAARNVVREVNAGXXXXXXXXXXXXXXXXXXXXXXXAEDGRPRGVGGGKGPRGGIRPAGGGGRARSR----KGGEAVDMD--VDSDVSSCDESNNDNSPPRGAAHGQQRNATRKRKASRVLGPSNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------------------DVVPVERLDWPSTVIPRTPYAVPLLLSCLSTYPDKGGXXXXXXXXXSE-------------WELSSKLL-PSLRQQELVREANLQDRARCEQTE 805
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BLAST of mRNA_H-canaliculatus_F_contig12262.1941.1 vs. uniprot
Match: A0A6H5KRP0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.180e-21
Identity = 150/327 (45.87%), Postives = 167/327 (51.07%), Query Frame = 1 
Query:  226 DVHSLTARLMLRCWNAVGEKLAAARKVVTEVGA------------EAGTAAPRRVASAENGLPSK--GARGPRGGLRSGDGXXXXXXXXXXXKGEAAMDVDGGXDSDYSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVPVERLDWPSTVIPRTPYDVPLLLSCLSTYPDK-------------------ARTRSALEREGARPRKDVVGXXXXXX-----WELTTELLLPELRREEILREAKLQDRARCEQTE 1092
            DVH+LTA+ MLRCWNAVGE+LAAARKVV EV A                        AE+G P    G +GPRGG+R   G XXXXXXXX  KG  A+D+D   DSD SS                                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   +VVP+ERLDWPSTVIPRTPY VPLLLSCLSTYPDK                     T    E E         G           WEL+++LL P LR++E++REA LQDRARCEQTE
Sbjct:  841 DVHALTAQSMLRCWNAVGERLAAARKVVREVNAGXXXXXXXXXXXXXXXXXXXXXGRAEDGRPKGVGGGKGPRGGIRPTGGGXXXXXXXX--KGGEAVDMD--MDSDVSSCDESNNDNSPSRGAAHGQQRNATRKRKVSRELGPSNAASPFSNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------------------DVVPMERLDWPSTVIPRTPYGVPLLLSCLSTYPDKLAAALYPSPSSRPNAGGEATTTVGVAETEPPGSEGXXXGCSSGSTSECSEWELSSKLL-PNLRQQELVREATLQDRARCEQTE 1144
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12262.1941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJU4_ECTSI4.430e-2246.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRP0_9PHAE2.180e-2145.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12262contigH-canaliculatus_F_contig12262:803..3392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1092
Cds size1092
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12262.1941.1prot_H-canaliculatus_F_contig12262.1941.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12262 803..3392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.0661964-CDS-H-canaliculatus_F_contig12262:802..10621622928942.0661964-CDS-H-canaliculatus_F_contig12262:802..1062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 803..1062 +
1696845621.5575721-CDS-H-canaliculatus_F_contig12262:802..10621696845621.5575721-CDS-H-canaliculatus_F_contig12262:802..1062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 803..1062 +
1622928942.1078112-CDS-H-canaliculatus_F_contig12262:1305..15071622928942.1078112-CDS-H-canaliculatus_F_contig12262:1305..1507Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 1306..1507 +
1696845621.5673673-CDS-H-canaliculatus_F_contig12262:1305..15071696845621.5673673-CDS-H-canaliculatus_F_contig12262:1305..1507Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 1306..1507 +
1622928942.1232061-CDS-H-canaliculatus_F_contig12262:2258..27521622928942.1232061-CDS-H-canaliculatus_F_contig12262:2258..2752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 2259..2752 +
1696845621.5818334-CDS-H-canaliculatus_F_contig12262:2258..27521696845621.5818334-CDS-H-canaliculatus_F_contig12262:2258..2752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 2259..2752 +
1622928942.161582-CDS-H-canaliculatus_F_contig12262:3256..33921622928942.161582-CDS-H-canaliculatus_F_contig12262:3256..3392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 3257..3392 +
1696845621.5982392-CDS-H-canaliculatus_F_contig12262:3256..33921696845621.5982392-CDS-H-canaliculatus_F_contig12262:3256..3392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12262 3257..3392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12262.1941.1

>prot_H-canaliculatus_F_contig12262.1941.1 ID=prot_H-canaliculatus_F_contig12262.1941.1|Name=mRNA_H-canaliculatus_F_contig12262.1941.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=364bp
EGGPSRSSISKGKGKASAGAASGSDPMDVEGESVVAPKPASCGSGGSGGS
NADRCAGVSGGGAGGGEAVPDPTPDDVHSLTARLMLRCWNAVGEKLAAAR
KVVTEVGAEAGTAAPRRVASAENGLPSKGARGPRGGLRSGDGGGGGGGRA
RSRKGEAAMDVDGGGDSDYSSAGDDESHDDNDNNNNSNDGGGGGGGASYQ
GRGGSQQHLRKRKLSRILVASSSSAARKRGRKGEGGGKGGGGGKAAAAAA
AGAAAAGAAAAAAAAAAAAAEVVPVERLDWPSTVIPRTPYDVPLLLSCLS
TYPDKARTRSALEREGARPRKDVVGGGGGGGWELTTELLLPELRREEILR
EAKLQDRARCEQTE
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mRNA from alignment at H-canaliculatus_F_contig12262:803..3392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12262.1941.1 ID=mRNA_H-canaliculatus_F_contig12262.1941.1|Name=mRNA_H-canaliculatus_F_contig12262.1941.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2590bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12262:803..3392+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGCGGACCTAGCCGCAGCAGCATCAGCAAGGGGAAAGGGAAGGCTAG
CGCCGGTGCCGCGTCGGGGTCAGATCCGATGGACGTCGAGGGGGAGAGTG
TGGTGGCCCCAAAGCCGGCGAGCTGCGGCAGCGGGGGCAGCGGCGGCAGC
AACGCCGATAGATGCGCCGGGGTGAGCGGCGGGGGTGCGGGTGGGGGCGA
AGCGGTGCCGGACCCGACCCCTGACGACGTGCACTCCTTGACGGCGCGGT
TGATGCTTAGGTGAGACGAGGCGCGAGACGTGTCGTTGCCCCCTGGGATA
TGGGTTGGGGCGGAAGCTGAACTCGCCTTTGCGGGCTCGATATGCTGTTT
GCGCATCGAGTCGAAGCTTCACCCCGCCGCCTGTCCCGTCCGCCGTGCCC
CCACGCGAGACCACCACGACAACAACAACACCCCGCGACCACGGTCACAC
CTCGAGCTCATGACACGCTACACCCCTGCCCCGGCCCCGAACGCCGCTCC
AAGGTGCTGGAACGCCGTCGGCGAGAAGCTGGCGGCCGCAAGGAAAGTGG
TGACAGAGGTCGGCGCAGAGGCAGGGACGGCGGCGCCACGGCGCGTCGCC
TCGGCCGAGAACGGGCTGCCTTCGAAGGGGGCGAGGGGGCCCCGCGGAGG
ACTTCGGTCGGGGGATGGTGGTGGTGGTGGCGGTGGCAGGGCGAGGTCGC
GAAAGGTAGGTCGGGGCGGCTGAGTTGCAGCCCTGCCGTATTGGATTCTC
GTGCGCCGGCCCCCGCGTGTTGAGTTCCGTGCGCCCGCTCGTGGGTTTCT
CCCAGCCCTCACGAGAGTCAACAAGACCGAACGCCCTCCCCTGAAACAAA
ATGTACGGACTCCTGAGTCGCCATTGGTTTCGCCTCAGCGGAGGGTATTC
CTTTGGTGTTGTTGACTCTTTCTCACAAAATAGAGGGACTCGAGAACAAT
TTGTGGAATGCCTGACGGTGACGGTTCATTCAGTGGGGTGGACGGGATAA
TGTCAACAAGAATGATCCCGTCGAAACTTGTGCGTTTCATCTTTCTCGGC
GGGTGGGATGGCGGGCGGGATGGCCGGCCGAGATGGCCGTCTTGGCTGCA
TTTCTCCTCGCCTAGTGTCCGATTTTTTTGTCCTTGCGACGTGTAGAGGG
CACCTTTTTTTTTCTTCTTCTTCTTTTTTTTCCTACCTTCCTTTCTTGCG
GCCGCGCTGTCGACCCCACCCACCCGAAGCTGGTTCTGAATCTCGGAATT
GGCATTTTCCGTCCCCAAAAGTCTCGCGAAAGCAGGCACTGCTCGTACCG
CCTGCCTGCTGCGTACCACGCGCACCCCGTAGTCTTGTGTTGGGGGGGCA
AGCGTCCGGTTGGAACATAGCATCCGACGGACAGGCACGATTTTCCCTTC
CCCGGGGCCGCGCCCGTCTACACGCCTCTGCGTGTCTTTCCTCTCGCCCG
CGGCAGGGGGAGGCGGCCATGGATGTCGACGGCGGCGGCGACAGCGACTA
CTCCTCCGCAGGCGACGACGAGAGCCATGACGACAACGACAACAACAACA
ACAGCAACGACGGCGGCGGCGGCGGCGGCGGTGCGTCCTACCAGGGGAGA
GGGGGCTCGCAGCAGCACCTGCGGAAGAGGAAGCTGTCACGCATCCTCGT
TGCCTCGAGCTCTTCCGCGGCGCGTAAGCGCGGAAGAAAGGGCGAAGGCG
GGGGGAAGGGGGGTGGCGGCGGCAAGGCGGCGGCGGCAGCGGCGGCGGGG
GCAGCGGCGGCGGGGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGAGGTTGTCCCCGTCGAGCGGCTTGACTGGCCGTCGACCGTAATCC
CGAGGACGCCGTACGATGTCCCGCTGCTGCTCTCTTGCCTCAGCACCTAC
CCGGACAAGGCAAGGACACGCAGCGCGCTTGAGAGAGAGGGGGCACGGCC
GTTTGCGGTGTGCCTCGAGTAGTTCGGCCATTCTTTCATCCTGCGTCGCC
CCCTTCAGAAAAGGGGCGCAAGGCGAGAGCCGGTGCTTGTCTCGGAGCAA
TCCCCCTTGGGGCGGACATTTCTCGAAGCAAGAAGGAAACACGAACGAAC
GAAGACACGCACAAATGCGCAGGAAAGTCCCTAGTGATTGTTGATTGGTG
ATTGGTGATAGGTGATTGGTGATTGTTGGACTCCTCAACGACTCAACGGC
CCCAACCTCGTCGCCTCTCCCTGGCTCCTCTCCCTCCATCCCTCTCTCTC
TCTGCCCCCTTCTCCCTCTCAGGTGGCGGCGGCGCTGCACCCGAGCCCGC
CGGCCTCTCGAAGCAAGGAGGAACCGGCTCCTTCTGCGGTGGCGGCGGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAACATCGCCACCAGCACCAGCACC
AGCAGAGGCAGGGGGGGTAGTGTCGCCCCAAAAACTAGTTCCCCACGAGG
AAAGACGGAAGGACGTCGTGGGCGGCGGCGGCGGCGGCGGCTGGGAGCTG
ACCACAGAGCTGCTGCTGCCCGAGCTGCGGCGAGAAGAGATCTTGCGGGA
GGCCAAGCTTCAGGATAGGGCGCGGTGCGAGCAGACGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12262:803..3392+

>mRNA_H-canaliculatus_F_contig12262.1941.1 ID=mRNA_H-canaliculatus_F_contig12262.1941.1|Name=mRNA_H-canaliculatus_F_contig12262.1941.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2184bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12262:803..3392+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGCGGACCTAGCCGCAGCAGCATCAGCAAGGGGAAAGGGAAGGCTAG
CGCCGGTGCCGCGTCGGGGTCAGATCCGATGGACGTCGAGGGGGAGAGTG
TGGTGGCCCCAAAGCCGGCGAGCTGCGGCAGCGGGGGCAGCGGCGGCAGC
AACGCCGATAGATGCGCCGGGGTGAGCGGCGGGGGTGCGGGTGGGGGCGA
AGCGGTGCCGGACCCGACCCCTGACGACGTGCACTCCTTGACGGCGCGGT
TGATGCTTAGGAGGGCGGACCTAGCCGCAGCAGCATCAGCAAGGGGAAAG
GGAAGGCTAGCGCCGGTGCCGCGTCGGGGTCAGATCCGATGGACGTCGAG
GGGGAGAGTGTGGTGGCCCCAAAGCCGGCGAGCTGCGGCAGCGGGGGCAG
CGGCGGCAGCAACGCCGATAGATGCGCCGGGGTGAGCGGCGGGGGTGCGG
GTGGGGGCGAAGCGGTGCCGGACCCGACCCCTGACGACGTGCACTCCTTG
ACGGCGCGGTTGATGCTTAGGTGCTGGAACGCCGTCGGCGAGAAGCTGGC
GGCCGCAAGGAAAGTGGTGACAGAGGTCGGCGCAGAGGCAGGGACGGCGG
CGCCACGGCGCGTCGCCTCGGCCGAGAACGGGCTGCCTTCGAAGGGGGCG
AGGGGGCCCCGCGGAGGACTTCGGTCGGGGGATGGTGGTGGTGGTGGCGG
TGGCAGGGCGAGGTCGCGAAAGGTGCTGGAACGCCGTCGGCGAGAAGCTG
GCGGCCGCAAGGAAAGTGGTGACAGAGGTCGGCGCAGAGGCAGGGACGGC
GGCGCCACGGCGCGTCGCCTCGGCCGAGAACGGGCTGCCTTCGAAGGGGG
CGAGGGGGCCCCGCGGAGGACTTCGGTCGGGGGATGGTGGTGGTGGTGGC
GGTGGCAGGGCGAGGTCGCGAAAGGGGGAGGCGGCCATGGATGTCGACGG
CGGCGGCGACAGCGACTACTCCTCCGCAGGCGACGACGAGAGCCATGACG
ACAACGACAACAACAACAACAGCAACGACGGCGGCGGCGGCGGCGGCGGT
GCGTCCTACCAGGGGAGAGGGGGCTCGCAGCAGCACCTGCGGAAGAGGAA
GCTGTCACGCATCCTCGTTGCCTCGAGCTCTTCCGCGGCGCGTAAGCGCG
GAAGAAAGGGCGAAGGCGGGGGGAAGGGGGGTGGCGGCGGCAAGGCGGCG
GCGGCAGCGGCGGCGGGGGCAGCGGCGGCGGGGGCAGCGGCAGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGAGGTTGTCCCCGTCGAGCGGCTTGACT
GGCCGTCGACCGTAATCCCGAGGACGCCGTACGATGTCCCGCTGCTGCTC
TCTTGCCTCAGCACCTACCCGGACAAGGCAAGGACACGCAGCGCGCTTGA
GAGAGAGGGGGCACGGCCGGGGAGGCGGCCATGGATGTCGACGGCGGCGG
CGACAGCGACTACTCCTCCGCAGGCGACGACGAGAGCCATGACGACAACG
ACAACAACAACAACAGCAACGACGGCGGCGGCGGCGGCGGCGGTGCGTCC
TACCAGGGGAGAGGGGGCTCGCAGCAGCACCTGCGGAAGAGGAAGCTGTC
ACGCATCCTCGTTGCCTCGAGCTCTTCCGCGGCGCGTAAGCGCGGAAGAA
AGGGCGAAGGCGGGGGGAAGGGGGGTGGCGGCGGCAAGGCGGCGGCGGCA
GCGGCGGCGGGGGCAGCGGCGGCGGGGGCAGCGGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGAGGTTGTCCCCGTCGAGCGGCTTGACTGGCCGT
CGACCGTAATCCCGAGGACGCCGTACGATGTCCCGCTGCTGCTCTCTTGC
CTCAGCACCTACCCGGACAAGGCAAGGACACGCAGCGCGCTTGAGAGAGA
GGGGGCACGGCCACGGAAGGACGTCGTGGGCGGCGGCGGCGGCGGCGGCT
GGGAGCTGACCACAGAGCTGCTGCTGCCCGAGCTGCGGCGAGAAGAGATC
TTGCGGGAGGCCAAGCTTCAGGATAGGGCGCGGTGCGAGCAGACGGAGAC
GGAAGGACGTCGTGGGCGGCGGCGGCGGCGGCGGCTGGGAGCTGACCACA
GAGCTGCTGCTGCCCGAGCTGCGGCGAGAAGAGATCTTGCGGGAGGCCAA
GCTTCAGGATAGGGCGCGGTGCGAGCAGACGGAG
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