mRNA_H-canaliculatus_F_contig10168.194.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10168.194.1
Unique NamemRNA_H-canaliculatus_F_contig10168.194.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 4.400e-59
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 VVKGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEASCRWEARHTFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK 291
            +VKGN LTPE GWKCVLAFFAF++ VPGSNRY++EEKDEPHLRTRIGMEASCRW+ARH+FAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK
Sbjct:  314 IVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK 410
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BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A836CAN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.360e-29
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 VVKGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEASCRWEARHTFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISL 288
            +VKG H+ PE  W+C  AFFAFD  VPGS + FV+ + EPH+R+R+ +  S RWE   +   F +P+P +   +VHYT+RS +SL+ +PEQ RI L
Sbjct:   49 IVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHL 144
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BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A7S2S6V9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6V9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.530e-11
Identity = 31/94 (32.98%), Postives = 45/94 (47.87%), Query Frame = 1 
Query:    7 KGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEASC--RWEARHTFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRI 282
            KGN    + GW+C+ AF+AFDN  PG++RY+ + K +P+   R+G E +    WE                   V Y  +  DS    PEQ R+
Sbjct:  338 KGNFCPCDQGWRCIFAFYAFDNPGPGTSRYYCQHKVDPYYTIRVGKEPTYIHDWEDYAXXXXXXXXXXXXXXFSVDYVTQDVDSRTDTPEQSRV 431
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BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A7S2AWR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWR6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.640e-10
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   28 EHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGME 147
            E GW+C+ AF+AFD  +PG+ RY+V+E+ EPH R R+G E
Sbjct:    3 EEGWRCLFAFYAFDEMIPGTTRYYVQEQFEPHQRIRVGQE 42
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BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A7S3K3X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3X8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-7
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    1 VVKGNHLTP-EHGWKCVLAFFAFDNDVPGSNRYFVEE--KDEPHLRTRIGME-ASCR-WEARHTFAAF--DVPVPGSCALDVHYTIR 240
            ++ G HL P +  W+C  AFFA D   PG+N+YF+++  + E + R RIGM  A C  W+    F  +  D+P P +   +V Y +R
Sbjct:  207 IISG-HLCPVQRPWRCAFAFFALDEQAPGTNKYFIQKTPQSEYYPRIRIGMTPAQCGGWDPHDQFIFYAPDMPWPCTAKFNVQYKMR 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LKG0_ECTSI4.400e-5989.69WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CAN8_9STRA7.360e-2947.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S6V9_9STRA9.530e-1132.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2AWR6_9STRA3.640e-1055.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3K3X8_9STRA1.220e-736.78Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10168contigH-canaliculatus_F_contig10168:192..951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.247095-CDS-H-canaliculatus_F_contig10168:191..3901622928646.247095-CDS-H-canaliculatus_F_contig10168:191..390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10168 192..390 -
1696845511.4771655-CDS-H-canaliculatus_F_contig10168:191..3901696845511.4771655-CDS-H-canaliculatus_F_contig10168:191..390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10168 192..390 -
1622928646.2671578-CDS-H-canaliculatus_F_contig10168:859..9511622928646.2671578-CDS-H-canaliculatus_F_contig10168:859..951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10168 860..951 -
1696845511.4880674-CDS-H-canaliculatus_F_contig10168:859..9511696845511.4880674-CDS-H-canaliculatus_F_contig10168:859..951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10168 860..951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10168.194.1prot_H-canaliculatus_F_contig10168.194.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10168 192..951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10168.194.1

>prot_H-canaliculatus_F_contig10168.194.1 ID=prot_H-canaliculatus_F_contig10168.194.1|Name=mRNA_H-canaliculatus_F_contig10168.194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
VVKGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEA
SCRWEARHTFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK
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mRNA from alignment at H-canaliculatus_F_contig10168:192..951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10168.194.1 ID=mRNA_H-canaliculatus_F_contig10168.194.1|Name=mRNA_H-canaliculatus_F_contig10168.194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=760bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10168:192..951- (Hapterophycus canaliculatus Oshoro5f female)
GTTGTAAAAGGGAACCATCTGACTCCGGAACACGGTTGGAAGTGCGTCCT
GGCGTTTTTTGCCTTCGACAATGACGTCCCAGGGAGCAACAGGTGCCACT
CTCTTCAGATTGCTAACCTCACGCAGAAAGTTTTTGGTATATTTCCTCCG
TATATTTTCCACGGTTGGCCCCAAGTTCTCTCGCCTCTTGGGAAACCATG
AGTCTCTTCGGTGTCATGTGTGAGCCTGAGTCGGTAAGCCCGGACTTGCT
GGCTTCAGATGGCGAATATCAGAGGTACGAAAGCGCGACACTTTTAGTCT
GGCTGCGTTGACGGTCGCTTGTCCTGGCATATTTCACTCTGAGCGCCGCA
TCTCAGGCCTTCGAGGCGTCGTTTCCATCAAACACCGATTCACACAATCG
AGCTGACTGACACACCAAAGACACCGCCTTTCGGATAATGGAGGCACACA
AGCCAAAGGGGAAACAACGAAACCATCGATGGAAGCCTGTTTCGCTCGTT
GTGGCTGTTGCGTTGTGGCTGTTACTCTTCACACACACACATACACACAT
ACACACGACAGGTACTTCGTTGAAGAGAAGGACGAGCCGCACTTGCGAAC
TCGGATCGGCATGGAGGCGTCCTGCCGGTGGGAAGCCAGGCACACCTTCG
CCGCCTTCGACGTGCCCGTTCCGGGCTCATGCGCTCTGGATGTGCACTAC
ACCATCCGCAGCACGGACAGTCTCAACCCCTATCCGGAGCAGTGTCGAAT
ATCCTTGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10168:192..951-

>mRNA_H-canaliculatus_F_contig10168.194.1 ID=mRNA_H-canaliculatus_F_contig10168.194.1|Name=mRNA_H-canaliculatus_F_contig10168.194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10168:192..951- (Hapterophycus canaliculatus Oshoro5f female)
GTTGTAAAAGGGAACCATCTGACTCCGGAACACGGTTGGAAGTGCGTCCT
GGCGTTTTTTGCCTTCGACAATGACGTCCCAGGGAGCAACAGGTTGTAAA
AGGGAACCATCTGACTCCGGAACACGGTTGGAAGTGCGTCCTGGCGTTTT
TTGCCTTCGACAATGACGTCCCAGGGAGCAACAGGTACTTCGTTGAAGAG
AAGGACGAGCCGCACTTGCGAACTCGGATCGGCATGGAGGCGTCCTGCCG
GTGGGAAGCCAGGCACACCTTCGCCGCCTTCGACGTGCCCGTTCCGGGCT
CATGCGCTCTGGATGTGCACTACACCATCCGCAGCACGGACAGTCTCAAC
CCCTATCCGGAGCAGTGTCGAATATCCTTGAAGGTACTTCGTTGAAGAGA
AGGACGAGCCGCACTTGCGAACTCGGATCGGCATGGAGGCGTCCTGCCGG
TGGGAAGCCAGGCACACCTTCGCCGCCTTCGACGTGCCCGTTCCGGGCTC
ATGCGCTCTGGATGTGCACTACACCATCCGCAGCACGGACAGTCTCAACC
CCTATCCGGAGCAGTGTCGAATATCCTTGAAG
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