mRNA_H-canaliculatus_F_contig12254.1935.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12254.1935.1
Unique NamemRNA_H-canaliculatus_F_contig12254.1935.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12254.1935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12254contigH-canaliculatus_F_contig12254:1737..2769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1035
Cds size792
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.3601127-UTR-H-canaliculatus_F_contig12254:1736..19771622928941.3601127-UTR-H-canaliculatus_F_contig12254:1736..1977Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12254 1737..1977 +
1696845621.207205-UTR-H-canaliculatus_F_contig12254:1736..19771696845621.207205-UTR-H-canaliculatus_F_contig12254:1736..1977Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12254 1737..1977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.3736722-CDS-H-canaliculatus_F_contig12254:1977..27691622928941.3736722-CDS-H-canaliculatus_F_contig12254:1977..2769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12254 1978..2769 +
1696845621.2174182-CDS-H-canaliculatus_F_contig12254:1977..27691696845621.2174182-CDS-H-canaliculatus_F_contig12254:1977..2769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12254 1978..2769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12254.1935.1prot_H-canaliculatus_F_contig12254.1935.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12254 1978..2769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12254.1935.1

>prot_H-canaliculatus_F_contig12254.1935.1 ID=prot_H-canaliculatus_F_contig12254.1935.1|Name=mRNA_H-canaliculatus_F_contig12254.1935.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=264bp
MQYTEITVSEVSRDGHSRHSNMAVHRSRRKPPSKVQPFCLISSALATSSG
RPSSGRNSSVPRRRKRTEGPTSHITHQASATSFSRKHSRCVMCDVTGSYV
AVPWTPHDICLHHESLGRSGSTAADVPLNNTGTADDTLFRRLFRRRNRSF
AQTVLGISPHVPQWTLVSTFSTRSKRSYNYDVYPAAERNMLSTVFVVVVV
TAGVRHQSQPQTSRRWRGRFRPLFALTVTASRTPSTRPPLVRALSVIVRL
TLLGFGPLFFLLAL
back to top

mRNA from alignment at H-canaliculatus_F_contig12254:1737..2769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12254.1935.1 ID=mRNA_H-canaliculatus_F_contig12254.1935.1|Name=mRNA_H-canaliculatus_F_contig12254.1935.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1033bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12254:1737..2769+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGGAGCTCGAAAGCTGTTCATCATGCTTGAATCAGTCCCGAAACACAA
CCGCAATATCTTTGAATCGTTGTAGCGGGACCTTCAACAACATCTGTCGA
ATGCTCCGAGCAATTCCACAAAGGGAAAATGCATGCTCGAATTCGAGCTC
GTCTTCGCAAGCAGGGCTTCTCTCTTGTGAAAATGAGGAGCACCTGATTT
CGAGTTTGTCTTGAAAAAGCAGCACATCCGAGGAAACGAACATGCAATAC
ACCGAAATAACAGTGTCTGAAGTGAGTAGAGACGGCCATTCTCGTCACTC
TAACATGGCAGTGCATCGGTCTCGCAGAAAGCCGCCATCAAAAGTGCAAC
CCTTTTGTCTAATCTCATCTGCGCTCGCCACCAGTAGTGGACGTCCTTCG
TCCGGCAGGAATTCCTCAGTGCCCCGAAGAAGGAAGAGGACGGAAGGTCC
CACATCACACATCACACATCAGGCATCAGCAACATCGTTCTCACGAAAAC
ACTCCCGGTGCGTGATGTGTGATGTGACAGGCAGTTACGTTGCCGTGCCT
TGGACACCACACGACATCTGTTTACACCATGAGTCCCTCGGTCGTTCGGG
ATCCACTGCTGCAGACGTTCCTCTCAACAACACTGGAACGGCTGATGACA
CGCTCTTCAGGAGACTCTTCAGGAGACGAAATAGATCGTTTGCCCAAACC
GTTCTTGGAATCTCTCCGCATGTTCCCCAATGGACACTCGTCAGCACTTT
CTCGACGAGAAGCAAGCGCAGCTACAACTATGACGTGTATCCTGCCGCAG
AGCGCAACATGTTATCAACTGTCTTCGTCGTCGTCGTCGTCACCGCTGGA
GTACGCCACCAGTCCCAACCCCAGACCTCCCGCCGCTGGCGCGGCCGCTT
CCGTCCCCTCTTTGCTCTCACTGTCACCGCCTCCAGAACCCCCTCCACTC
GACCTCCGCTCGTTCGAGCCCTTTCCGTGATTGTCCGCCTTACTCTTCTT
GGATTTGGACCCCTTTTTTTTCTTCTTGCTCTT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12254:1737..2769+

>mRNA_H-canaliculatus_F_contig12254.1935.1 ID=mRNA_H-canaliculatus_F_contig12254.1935.1|Name=mRNA_H-canaliculatus_F_contig12254.1935.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12254:1737..2769+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAATACACCGAAATAACAGTGTCTGAAGTGAGTAGAGACGGCCATTC
TCGTCACTCTAACATGGCAGTGCATCGGTCTCGCAGAAAGCCGCCATCAA
AAGTGCAACCCTTTTGTCTAATCTCATCTGCGCTCGCCACCAGTAGTGGA
CGTCCTTCGTCCGGCAGGAATTCCTCAGTGCCCCGAAGAAGGAAGAGGAC
GGAAGGTCCCACATCACACATCACACATCAGGCATCAGCAACATCGTTCT
CACGAAAACACTCCCGGTGCGTGATGTGTGATGTGACAGGCAGTTACGTT
GCCGTGCCTTGGACACCACACGACATCTGTTTACACCATGAGTCCCTCGG
TCGTTCGGGATCCACTGCTGCAGACGTTCCTCTCAACAACACTGGAACGG
CTGATGACACGCTCTTCAGGAGACTCTTCAGGAGACGAAATAGATCGTTT
GCCCAAACCGTTCTTGGAATCTCTCCGCATGTTCCCCAATGGACACTCGT
CAGCACTTTCTCGACGAGAAGCAAGCGCAGCTACAACTATGACGTGTATC
CTGCCGCAGAGCGCAACATGTTATCAACTGTCTTCGTCGTCGTCGTCGTC
ACCGCTGGAGTACGCCACCAGTCCCAACCCCAGACCTCCCGCCGCTGGCG
CGGCCGCTTCCGTCCCCTCTTTGCTCTCACTGTCACCGCCTCCAGAACCC
CCTCCACTCGACCTCCGCTCGTTCGAGCCCTTTCCGTGATTGTCCGCCTT
ACTCTTCTTGGATTTGGACCCCTTTTTTTTCTTCTTGCTCTTATGCAATA
CACCGAAATAACAGTGTCTGAAGTGAGTAGAGACGGCCATTCTCGTCACT
CTAACATGGCAGTGCATCGGTCTCGCAGAAAGCCGCCATCAAAAGTGCAA
CCCTTTTGTCTAATCTCATCTGCGCTCGCCACCAGTAGTGGACGTCCTTC
GTCCGGCAGGAATTCCTCAGTGCCCCGAAGAAGGAAGAGGACGGAAGGTC
CCACATCACACATCACACATCAGGCATCAGCAACATCGTTCTCACGAAAA
CACTCCCGGTGCGTGATGTGTGATGTGACAGGCAGTTACGTTGCCGTGCC
TTGGACACCACACGACATCTGTTTACACCATGAGTCCCTCGGTCGTTCGG
GATCCACTGCTGCAGACGTTCCTCTCAACAACACTGGAACGGCTGATGAC
ACGCTCTTCAGGAGACTCTTCAGGAGACGAAATAGATCGTTTGCCCAAAC
CGTTCTTGGAATCTCTCCGCATGTTCCCCAATGGACACTCGTCAGCACTT
TCTCGACGAGAAGCAAGCGCAGCTACAACTATGACGTGTATCCTGCCGCA
GAGCGCAACATGTTATCAACTGTCTTCGTCGTCGTCGTCGTCACCGCTGG
AGTACGCCACCAGTCCCAACCCCAGACCTCCCGCCGCTGGCGCGGCCGCT
TCCGTCCCCTCTTTGCTCTCACTGTCACCGCCTCCAGAACCCCCTCCACT
CGACCTCCGCTCGTTCGAGCCCTTTCCGTGATTGTCCGCCTTACTCTTCT
TGGATTTGGACCCCTTTTTTTTCTTCTTGCTCTT
back to top