mRNA_H-canaliculatus_F_contig12251.1934.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12251.1934.1
Unique NamemRNA_H-canaliculatus_F_contig12251.1934.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12251.1934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12251contigH-canaliculatus_F_contig12251:16..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size585
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12251.1934.1prot_H-canaliculatus_F_contig12251.1934.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12251 244..701 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.288993-UTR-H-canaliculatus_F_contig12251:15..2431622928941.288993-UTR-H-canaliculatus_F_contig12251:15..243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12251 16..243 +
1696845621.1572893-UTR-H-canaliculatus_F_contig12251:15..2431696845621.1572893-UTR-H-canaliculatus_F_contig12251:15..243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12251 16..243 +
1622928941.3240926-UTR-H-canaliculatus_F_contig12251:701..7371622928941.3240926-UTR-H-canaliculatus_F_contig12251:701..737Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12251 702..737 +
1696845621.1952899-UTR-H-canaliculatus_F_contig12251:701..7371696845621.1952899-UTR-H-canaliculatus_F_contig12251:701..737Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12251 702..737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.3010445-CDS-H-canaliculatus_F_contig12251:243..3231622928941.3010445-CDS-H-canaliculatus_F_contig12251:243..323Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12251 244..323 +
1696845621.1696205-CDS-H-canaliculatus_F_contig12251:243..3231696845621.1696205-CDS-H-canaliculatus_F_contig12251:243..323Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12251 244..323 +
1622928941.3110673-CDS-H-canaliculatus_F_contig12251:460..7011622928941.3110673-CDS-H-canaliculatus_F_contig12251:460..701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12251 461..701 +
1696845621.182055-CDS-H-canaliculatus_F_contig12251:460..7011696845621.182055-CDS-H-canaliculatus_F_contig12251:460..701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12251 461..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12251.1934.1

>prot_H-canaliculatus_F_contig12251.1934.1 ID=prot_H-canaliculatus_F_contig12251.1934.1|Name=mRNA_H-canaliculatus_F_contig12251.1934.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MSTVEGGGWLAVHSFLSSVGAARYSRDETLTRTLNSALFLRSRPVSRAGW
CLLTRTTIDLPKAKGAGRGLSGRENCSTMGRKGAVGYHVFCLLWPSRSPG
PRRGAY*
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mRNA from alignment at H-canaliculatus_F_contig12251:16..737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12251.1934.1 ID=mRNA_H-canaliculatus_F_contig12251.1934.1|Name=mRNA_H-canaliculatus_F_contig12251.1934.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=722bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12251:16..737+ (Hapterophycus canaliculatus Oshoro5f female)
ACTCGGCATGCGAAAGTCCTCGTGGGTTTTCTATTATTTTGTCTCGGGGA
AGGGCATTCCTTTGCTGTTGTTGACCCTTTGTTTTAGAAATGTCCCGGAC
CAGGCGGAACGATGGGTTGATGCTATCGTGTGTTGGCGCGTCTTCCTCTC
GTGTCCGCGAAAAAATAACGCCAGCGAAAGACACTTGAACTCCTTCATCG
ATTAAACAGTCAAAACAGCGCTCGTGACATGTCGACAGTGGAAGGTGGTG
GCTGGTTGGCTGTTCATTCCTTCCTTTCGTCCGTGGGAGCAGCACGATAC
TCAAGAGACGGCCAGAGACGTCGAGAACAAGGCCGGGCACGCAAGAAGGA
TGACGAAACCGTTGGGTTGGACCTTCACGCCTGGAACACAGAAGAACCGC
ACACGCACGCTGCTCTTGTCAAAAACCGGCGACGAAGGAGGGGGCCGAAA
CCCTGACACGGACGCTGAATAGTGCTCTGTTCCTTCGTTCGCGTCCCGTC
TCTCGAGCTGGTTGGTGTCTGCTGACAAGAACGACCATCGACCTCCCAAA
GGCGAAAGGCGCGGGGCGGGGGTTGTCCGGGCGCGAGAACTGCTCGACGA
TGGGCCGGAAGGGTGCGGTAGGGTACCACGTCTTCTGCCTCCTATGGCCG
TCGCGCTCACCGGGCCCGCGTAGGGGTGCCTACTGAACGATACAAAAGAG
AAAACAAAAAATGCCAACTTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12251:16..737+

>mRNA_H-canaliculatus_F_contig12251.1934.1 ID=mRNA_H-canaliculatus_F_contig12251.1934.1|Name=mRNA_H-canaliculatus_F_contig12251.1934.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12251:16..737+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGACAGTGGAAGGTGGTGGCTGGTTGGCTGTTCATTCCTTCCTTTC
GTCCGTGGGAGCAGCACGATACTCAAGAGAATGTCGACAGTGGAAGGTGG
TGGCTGGTTGGCTGTTCATTCCTTCCTTTCGTCCGTGGGAGCAGCACGAT
ACTCAAGAGACGAAACCCTGACACGGACGCTGAATAGTGCTCTGTTCCTT
CGTTCGCGTCCCGTCTCTCGAGCTGGTTGGTGTCTGCTGACAAGAACGAC
CATCGACCTCCCAAAGGCGAAAGGCGCGGGGCGGGGGTTGTCCGGGCGCG
AGAACTGCTCGACGATGGGCCGGAAGGGTGCGGTAGGGTACCACGTCTTC
TGCCTCCTATGGCCGTCGCGCTCACCGGGCCCGCGTAGGGGTGCCTACTG
ACGAAACCCTGACACGGACGCTGAATAGTGCTCTGTTCCTTCGTTCGCGT
CCCGTCTCTCGAGCTGGTTGGTGTCTGCTGACAAGAACGACCATCGACCT
CCCAAAGGCGAAAGGCGCGGGGCGGGGGTTGTCCGGGCGCGAGAACTGCT
CGACGATGGGCCGGAAGGGTGCGGTAGGGTACCACGTCTTCTGCCTCCTA
TGGCCGTCGCGCTCACCGGGCCCGCGTAGGGGTGCCTACTGA
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