mRNA_H-canaliculatus_F_contig10167.193.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10167.193.1
Unique NamemRNA_H-canaliculatus_F_contig10167.193.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10167.193.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.020e-14
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 2 
Query:   65 GAHFWYKARDAHWWLAKISKSIGASSNPVRYIVRFLDDPGPIELPLPSDMYSHSMTAACGSWCLQ 259
            GA FWYK RD  WWL KI+   G       Y+VRFLDDPGP++L LP   YS + TA  GSWCLQ
Sbjct: 1302 GAFFWYKTRDGLWWLGKIT---GPPLQSDLYVVRFLDDPGPVKLALPDVRYSTAETAVSGSWCLQ 1363
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10167.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUZ4_9PHAE2.020e-1456.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10167contigH-canaliculatus_F_contig10167:91..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928646.1774368-CDS-H-canaliculatus_F_contig10167:90..1541622928646.1774368-CDS-H-canaliculatus_F_contig10167:90..154Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10167 91..154 +
1696845511.4564176-CDS-H-canaliculatus_F_contig10167:90..1541696845511.4564176-CDS-H-canaliculatus_F_contig10167:90..154Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10167 91..154 +
1622928646.197256-CDS-H-canaliculatus_F_contig10167:354..5511622928646.197256-CDS-H-canaliculatus_F_contig10167:354..551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10167 355..551 +
1696845511.4646149-CDS-H-canaliculatus_F_contig10167:354..5511696845511.4646149-CDS-H-canaliculatus_F_contig10167:354..551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10167 355..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10167.193.1prot_H-canaliculatus_F_contig10167.193.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10167 91..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10167.193.1

>prot_H-canaliculatus_F_contig10167.193.1 ID=prot_H-canaliculatus_F_contig10167.193.1|Name=mRNA_H-canaliculatus_F_contig10167.193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=87bp
GFSIVPRGLWLTPFQVSVLPAGRTLLVQGPRRPLVVGEDLQIHRCQLQPC
ALHRPLPGRPWTHRAAASIRHVLPFHDCRLWILVPPM
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mRNA from alignment at H-canaliculatus_F_contig10167:91..551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10167.193.1 ID=mRNA_H-canaliculatus_F_contig10167.193.1|Name=mRNA_H-canaliculatus_F_contig10167.193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=461bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10167:91..551+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTCTCCATTGTTCCTCGCGGACTCTGGCTCACGCCTTTCCAGGTTTC
GGTTTTGCCGGCGGGCTGTAGCCGTTTAGAGACAACCGATTAGACTACTG
ACCAGTCAGCGGCTACAGAAGTTAGTCGTGGGCGTTCGAACCCCGTCACT
TTCACTCCGAGGAGGGCGTCTCCCCTTGCCAGCGCTCTATCGACTCCATC
AGGACTTCTAATGTTATCACTTAACGGCAACGTAGTCTAGTCGGTTGTCT
CTAAACGGCTACAGGGCGCACACTTCTGGTACAAGGCCCGCGACGCCCAC
TGGTGGTTGGCGAAGATCTCCAAATCCATCGGTGCCAGCTCCAACCCTGT
GCGCTACATCGTCCGCTTCCTGGACGACCCTGGACCCATCGAGCTGCCGC
TTCCATCCGACATGTACTCCCATTCCATGACTGCCGCCTGTGGATCCTGG
TGCCTCCAATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10167:91..551+

>mRNA_H-canaliculatus_F_contig10167.193.1 ID=mRNA_H-canaliculatus_F_contig10167.193.1|Name=mRNA_H-canaliculatus_F_contig10167.193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10167:91..551+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTCTCCATTGTTCCTCGCGGACTCTGGCTCACGCCTTTCCAGGTTTC
GGTTTTGCCGGCGGGGCTTCTCCATTGTTCCTCGCGGACTCTGGCTCACG
CCTTTCCAGGTTTCGGTTTTGCCGGCGGGGCGCACACTTCTGGTACAAGG
CCCGCGACGCCCACTGGTGGTTGGCGAAGATCTCCAAATCCATCGGTGCC
AGCTCCAACCCTGTGCGCTACATCGTCCGCTTCCTGGACGACCCTGGACC
CATCGAGCTGCCGCTTCCATCCGACATGTACTCCCATTCCATGACTGCCG
CCTGTGGATCCTGGTGCCTCCAATGGGCGCACACTTCTGGTACAAGGCCC
GCGACGCCCACTGGTGGTTGGCGAAGATCTCCAAATCCATCGGTGCCAGC
TCCAACCCTGTGCGCTACATCGTCCGCTTCCTGGACGACCCTGGACCCAT
CGAGCTGCCGCTTCCATCCGACATGTACTCCCATTCCATGACTGCCGCCT
GTGGATCCTGGTGCCTCCAATG
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