mRNA_H-canaliculatus_F_contig12248.1929.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12248.1929.1
Unique NamemRNA_H-canaliculatus_F_contig12248.1929.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12248.1929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12248contigH-canaliculatus_F_contig12248:273..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.8858507-CDS-H-canaliculatus_F_contig12248:272..6021622928940.8858507-CDS-H-canaliculatus_F_contig12248:272..602Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 273..602 +
1696845620.9327908-CDS-H-canaliculatus_F_contig12248:272..6021696845620.9327908-CDS-H-canaliculatus_F_contig12248:272..602Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12248 273..602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928940.896076-UTR-H-canaliculatus_F_contig12248:602..7781622928940.896076-UTR-H-canaliculatus_F_contig12248:602..778Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12248 603..778 +
1696845620.9406672-UTR-H-canaliculatus_F_contig12248:602..7781696845620.9406672-UTR-H-canaliculatus_F_contig12248:602..778Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12248 603..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12248.1929.1prot_H-canaliculatus_F_contig12248.1929.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12248 273..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12248.1929.1

>prot_H-canaliculatus_F_contig12248.1929.1 ID=prot_H-canaliculatus_F_contig12248.1929.1|Name=mRNA_H-canaliculatus_F_contig12248.1929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
ALSLHALAWYHTETLAISPRVPRGGVVLRFPLFFLTQCQLLLSVDRTGRR
PEHRDRCAIIARIARDIEEVTTRTSPTWPSCHDPKSNRRGVIAVTAANLS
RGSQRYDVR*
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mRNA from alignment at H-canaliculatus_F_contig12248:273..778+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12248.1929.1 ID=mRNA_H-canaliculatus_F_contig12248.1929.1|Name=mRNA_H-canaliculatus_F_contig12248.1929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12248:273..778+ (Hapterophycus canaliculatus Oshoro5f female)
GCGTTGAGCTTGCATGCACTCGCTTGGTATCACACGGAAACGCTTGCTAT
TTCGCCGCGGGTACCGAGGGGGGGGGTCGTGCTCCGTTTCCCCCTTTTCT
TCCTCACTCAGTGCCAACTACTCTTATCTGTTGATAGGACCGGACGCCGA
CCGGAGCATCGTGACCGCTGTGCCATCATCGCAAGAATCGCCAGGGACAT
AGAAGAGGTCACCACTCGAACATCACCGACATGGCCATCGTGCCACGATC
CGAAATCAAACCGACGTGGCGTGATAGCCGTCACCGCCGCAAACCTTTCG
CGAGGCTCTCAGAGGTACGACGTGCGATGACTCTCGACGTTATGCCGAGT
GTATAATGCTGATCGCACCACAGGCACGAGAGGCCCCGCTACTGGTACTC
CTAGGCGGGGGGTGGGGGGTCGGCACAGAGACGACAACGCGTACTTCCTT
CGGCCTCCCCAATTCCACAGAAACCCCCGACAACGTACGCCTCCCACAAA
AACCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12248:273..778+

>mRNA_H-canaliculatus_F_contig12248.1929.1 ID=mRNA_H-canaliculatus_F_contig12248.1929.1|Name=mRNA_H-canaliculatus_F_contig12248.1929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12248:273..778+ (Hapterophycus canaliculatus Oshoro5f female)
GCGTTGAGCTTGCATGCACTCGCTTGGTATCACACGGAAACGCTTGCTAT
TTCGCCGCGGGTACCGAGGGGGGGGGTCGTGCTCCGTTTCCCCCTTTTCT
TCCTCACTCAGTGCCAACTACTCTTATCTGTTGATAGGACCGGACGCCGA
CCGGAGCATCGTGACCGCTGTGCCATCATCGCAAGAATCGCCAGGGACAT
AGAAGAGGTCACCACTCGAACATCACCGACATGGCCATCGTGCCACGATC
CGAAATCAAACCGACGTGGCGTGATAGCCGTCACCGCCGCAAACCTTTCG
CGAGGCTCTCAGAGGTACGACGTGCGATGAGCGTTGAGCTTGCATGCACT
CGCTTGGTATCACACGGAAACGCTTGCTATTTCGCCGCGGGTACCGAGGG
GGGGGGTCGTGCTCCGTTTCCCCCTTTTCTTCCTCACTCAGTGCCAACTA
CTCTTATCTGTTGATAGGACCGGACGCCGACCGGAGCATCGTGACCGCTG
TGCCATCATCGCAAGAATCGCCAGGGACATAGAAGAGGTCACCACTCGAA
CATCACCGACATGGCCATCGTGCCACGATCCGAAATCAAACCGACGTGGC
GTGATAGCCGTCACCGCCGCAAACCTTTCGCGAGGCTCTCAGAGGTACGA
CGTGCGATGA
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