mRNA_H-canaliculatus_F_contig12237.1921.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI) HSP 1 Score: 102 bits (255), Expect = 4.470e-24 Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 1
Query: 19 PARSNAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
P N Y RREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKT+EV
Sbjct: 326 PRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEV 380
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A835Z3A0_9STRA (SNF2-rel_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A0_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.770e-15 Identity = 40/66 (60.61%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 19 PARSNAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITG------------GLLCEEMGLGKTME 180
P N Y RREWADGGAPLWYFPLAGE L PP TG GLLCEEMGLGKT+E
Sbjct: 484 PGGLNGYFWERREWADGGAPLWYFPLAGELGLHPPPRDTGEFXXXXXXXXXGGLLCEEMGLGKTVE 549
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A7S0NI25_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI25_MICPS) HSP 1 Score: 71.2 bits (173), Expect = 3.180e-14 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
Query: 52 REWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
R WADGG WYFPLAGE RL+EPP + GG+L EEMGLGKT+EV
Sbjct: 66 RRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEV 108
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC) HSP 1 Score: 71.2 bits (173), Expect = 5.630e-13 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
Query: 52 REWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
R WADGG WYFPLAGE RL+EPP + GG+L EEMGLGKT+EV
Sbjct: 381 RRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEV 423
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A7S0DGF1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGF1_9EUKA) HSP 1 Score: 66.6 bits (161), Expect = 2.360e-11 Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 52 REWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
R+W DGG+ +YFP AGE RL PP + GGLLCEEMGLGKT+E+
Sbjct: 367 RQWLDGGS-YYYFPAAGELRLERPPTVRGGLLCEEMGLGKTLEM 409
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: W7TYI3_9STRA (Dna excision repair protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI3_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.920e-10 Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 31 NAYPSRRREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
N Y RR W D +YFP AGE RL +PPH TGG+LCEEMGLGKT+E
Sbjct: 451 NEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVE 503
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.950e-10 Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 31 NAYPSRRREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
N Y RR W D +YFP AGE RL +PPH TGG+LCEEMGLGKT+E
Sbjct: 451 NEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVE 503
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A7S3V3S8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V3S8_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 3.080e-9 Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query: 31 NAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
N Y R W D P ++ + GE R+ +PP + GGLLCEEMGLGKT+E
Sbjct: 41 NGYFWRACSWGDSKEPFYFSKVLGELRVEKPPLVRGGLLCEEMGLGKTLE 90
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: R7QAQ4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAQ4_CHOCR) HSP 1 Score: 55.1 bits (131), Expect = 2.820e-7 Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 31 NAYPSRRREWADG--GAP--LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTME 180
N Y R ++D G P +YFPLAGE RL +PP + GG++ EEMGLGKT+E
Sbjct: 12 NQYFWEERSFSDSVDGCPNRYYYFPLAGELRLRKPPDVRGGMITEEMGLGKTVE 65
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Match: A0A8J2SKG9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKG9_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 9.930e-7 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 49 RREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTMEV 183
+R +ADGG W+ P GE RL EPP +GGLLC+E+ +GKT+E+
Sbjct: 362 KRAFADGGE-YWFAPDLGECRLEEPPTASGGLLCDEISMGKTVEL 405 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12237.1921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12237.1921.1 >prot_H-canaliculatus_F_contig12237.1921.1 ID=prot_H-canaliculatus_F_contig12237.1921.1|Name=mRNA_H-canaliculatus_F_contig12237.1921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp MPLSFAPARSNAYPSRRREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCback to top mRNA from alignment at H-canaliculatus_F_contig12237:228..410+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12237.1921.1 ID=mRNA_H-canaliculatus_F_contig12237.1921.1|Name=mRNA_H-canaliculatus_F_contig12237.1921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=183bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12237:228..410+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12237:228..410+ >mRNA_H-canaliculatus_F_contig12237.1921.1 ID=mRNA_H-canaliculatus_F_contig12237.1921.1|Name=mRNA_H-canaliculatus_F_contig12237.1921.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12237:228..410+ (Hapterophycus canaliculatus Oshoro5f female)back to top |