mRNA_H-canaliculatus_F_contig12234.1919.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12234.1919.1
Unique NamemRNA_H-canaliculatus_F_contig12234.1919.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12234.1919.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.730e-39
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 LTSNRRGWFYHKAVWVVLPGGKKVVLTARVTKPIFGQAQGELVLLEMPRVDHPLSEPNLPWREKVLVRGPDVMFEA 228
            LT+ +RGWFYHKAVWVVLPGGKKVVLTARV KPIFGQA+GELVLLEMPRVDHPLSE NLPWREKVLV GPDVMFE 
Sbjct:  745 LTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEV 820
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BLAST of mRNA_H-canaliculatus_F_contig12234.1919.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.600e-38
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 LTSNRRGWFYHKAVWVVLPGGKKVVLTARVTKPIFGQAQGELVLLEMPRVDHPLSEPNLPWREKVLVRGPDVMFEA 228
            LT+ +RGWFYHKAVWVVLPGGKKVVLTARV KPIFGQA+GELVLLEMPRVD PLSE NLPWREKVLV GPDVMFE 
Sbjct:  403 LTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDSPLSEQNLPWREKVLVTGPDVMFEV 478
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BLAST of mRNA_H-canaliculatus_F_contig12234.1919.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.710e-23
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 LTSNRRGWFYHKAVWVVLPGGKKVVLTARVTKPIFGQAQGELVLLEMPRVDHPLSEPNLPWREKVLVRGPDVMF 222
            ++  ++GWFYHKAVWV +P G++ VL AR TKP+FG  +GELVL +MP V  PL+   LPWRE VL  GPDVMF
Sbjct:   57 VSGIKKGWFYHKAVWVNMPDGRRGVLAARATKPLFGGGRGELVLFDMPSVAQPLAAYALPWRETVLANGPDVMF 130
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BLAST of mRNA_H-canaliculatus_F_contig12234.1919.1 vs. uniprot
Match: A0A7S1TPM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.590e-15
Identity = 43/77 (55.84%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 LTSNRRGWFYHKAVWVVLPG-GKKVVLTARVTKPIFGQAQGELVLLEMPRVDHPLSEPNLPWREKVLVRGPDVMFEA 228
            LT +RRGWFYHKAV V L G G   VL AR  KP+ G   GELV LE P       E   PW+E VL RGPDVMF+ 
Sbjct:  230 LTPDRRGWFYHKAVLVDLRGDGSYGVLCARGRKPLVGAGSGELVFLEKPPGWAARGESAGPWKETVLSRGPDVMFDV 306
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BLAST of mRNA_H-canaliculatus_F_contig12234.1919.1 vs. uniprot
Match: A0A7S4CRI4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CRI4_9EUGL)

HSP 1 Score: 59.3 bits (142), Expect = 1.740e-8
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   61 GKKVVLTARVTKPI--FGQAQGELVLLEMPRVDHPLSEPNLPWREKVLVRGPDVMFEA 228
            G++ +LTAR  KP+  F +A GELV LE P    P  E + PW+E VLV GPDVMF+ 
Sbjct:    1 GREGILTARANKPLVPFTKALGELVWLERPNTLAPFREWSAPWKEHVLVTGPDVMFDV 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12234.1919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE3.730e-3989.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN5_ECTSI4.600e-3888.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJ47_9STRA3.710e-2359.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TPM8_9STRA5.590e-1555.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4CRI4_9EUGL1.740e-851.72Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12234contigH-canaliculatus_F_contig12234:2818..3403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue6e-14
Seed eggNOG ortholog55529.EKX48363
KEGG koko:K16465,ko:K16466
KEGG TC1.I.1
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001610.1
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928938.8293517-CDS-H-canaliculatus_F_contig12234:2817..29041622928938.8293517-CDS-H-canaliculatus_F_contig12234:2817..2904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 2818..2904 -
1696845620.2992065-CDS-H-canaliculatus_F_contig12234:2817..29041696845620.2992065-CDS-H-canaliculatus_F_contig12234:2817..2904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 2818..2904 -
1622928938.8432574-CDS-H-canaliculatus_F_contig12234:3256..34031622928938.8432574-CDS-H-canaliculatus_F_contig12234:3256..3403Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 3257..3403 -
1696845620.3125918-CDS-H-canaliculatus_F_contig12234:3256..34031696845620.3125918-CDS-H-canaliculatus_F_contig12234:3256..3403Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12234 3257..3403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12234.1919.1prot_H-canaliculatus_F_contig12234.1919.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12234 2818..3403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12234.1919.1

>prot_H-canaliculatus_F_contig12234.1919.1 ID=prot_H-canaliculatus_F_contig12234.1919.1|Name=mRNA_H-canaliculatus_F_contig12234.1919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
LTSNRRGWFYHKAVWVVLPGGKKVVLTARVTKPIFGQAQGELVLLEMPRV
DHPLSEPNLPWREKVLVRGPDVMFEAS*
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mRNA from alignment at H-canaliculatus_F_contig12234:2818..3403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12234.1919.1 ID=mRNA_H-canaliculatus_F_contig12234.1919.1|Name=mRNA_H-canaliculatus_F_contig12234.1919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=586bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12234:2818..3403- (Hapterophycus canaliculatus Oshoro5f female)
TTGACCTCAAACCGCAGGGGTTGGTTCTACCACAAGGCCGTGTGGGTCGT
CCTTCCGGGGGGCAAGAAAGTGGTGCTGACGGCGAGGGTGACCAAGCCCA
TCTTCGGCCAAGCGCAGGGCGAGCTCGTGCTCCTGGAGATGCCGCGGGTG
AGCCACGACGAGCGAGGCCGCAAGCTGTGCACGCCGGGGAACAGGCAGAA
TCATCCCGCAGAAGTTTCGGTGCAGAATTGGTCGGTGGAGTTGTGCTTGC
CTCACGCCCCGTACCGCGGGCAGAGTAGTGTCCTAGGAATCATGCCAGGC
GGTAGAGGTTTCGCGAGTCTTCTTGTCTTTGTGTGTGATGCGTTCGAGTC
AAGCGAGCACAGCGCCAGGTCTGGGCTGTCGGGATGCCAACCGATGTGGA
GCGAAAACATGGCTTTGCTTTCGATACCGGCATTCCAACGCTCGCTGTGC
GTTGTCGACCTTCACGTGCACCTCCACCCGTCGCTCCCCGTTTTGGCAGG
TGGACCATCCGCTCTCGGAACCGAACCTTCCGTGGAGAGAAAAAGTGTTG
GTCAGGGGACCCGATGTCATGTTCGAGGCGAGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12234:2818..3403-

>mRNA_H-canaliculatus_F_contig12234.1919.1 ID=mRNA_H-canaliculatus_F_contig12234.1919.1|Name=mRNA_H-canaliculatus_F_contig12234.1919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12234:2818..3403- (Hapterophycus canaliculatus Oshoro5f female)
TTGACCTCAAACCGCAGGGGTTGGTTCTACCACAAGGCCGTGTGGGTCGT
CCTTCCGGGGGGCAAGAAAGTGGTGCTGACGGCGAGGGTGACCAAGCCCA
TCTTCGGCCAAGCGCAGGGCGAGCTCGTGCTCCTGGAGATGCCGCGGTTG
ACCTCAAACCGCAGGGGTTGGTTCTACCACAAGGCCGTGTGGGTCGTCCT
TCCGGGGGGCAAGAAAGTGGTGCTGACGGCGAGGGTGACCAAGCCCATCT
TCGGCCAAGCGCAGGGCGAGCTCGTGCTCCTGGAGATGCCGCGGGTGGAC
CATCCGCTCTCGGAACCGAACCTTCCGTGGAGAGAAAAAGTGTTGGTCAG
GGGACCCGATGTCATGTTCGAGGCGAGTTGAGTGGACCATCCGCTCTCGG
AACCGAACCTTCCGTGGAGAGAAAAAGTGTTGGTCAGGGGACCCGATGTC
ATGTTCGAGGCGAGTTGA
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