mRNA_H-canaliculatus_F_contig1223.1914.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1223.1914.1 vs. uniprot
Match: D8LDY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY0_ECTSI) HSP 1 Score: 474 bits (1221), Expect = 1.740e-152 Identity = 343/740 (46.35%), Postives = 421/740 (56.89%), Query Frame = 1
Query: 1 ALARQAVALGDAKTLRNYLEESQNRDSTGVAGVVCGRSAWNFPAVSELLERGASADLQDTLGKTPPQMLELSKPARRRPWSGSSAIPGGSKELSACRRGLPCPDRPRTATGNGSGSMHDHRSTVSGSREARSSLAR--AAKDQPSTHEEDKIVAGDSLSTLQ-RSSIMNVHDDG--ALTVVAGKGTGHGIGGGRGETRASNGLG----ECWRCHREMAILEGRHHAPHMISGSSNGPG-VAPLASDGEGNEHENHHSVWGGGTLGSSDVEGDRGMDKGHSCAGLARD---------YSPLSP-EADTRLDELSAFEMLASSSRSSA-------PKCVSVSGSARDQSVDSVGPSLRQDEQASS----------LELSDSHVCRHN-GEEEETLGESVMKARGRRRLNTH--------RSNVVGMKRGSPTQRIRRRRCSGRXXXXXXXXGVKALGGASPGRVGRRNGRAKSGLRDGRASS---ERRRFFHQEDEVPEYVVGRRRMLWAQKSAEKYARRTDSLKRRREEIATPRRVKMAAAVEDEKRKMEEELKRKERVRNSPLRWGRDGRPQGSPIRPSSSPAAYASSHNTPTSTLSSPSASPFGRQRHRPATAGPYGGRSCIKCDPRWWFRGEFIGELGG-PTGLLEGLRAGDQRERGQGDTEGGDDSLWNMTVTDRYRILRPWTKLPHEDSELWWVKPRMNRNGKAVVVKVAAEGSDSEETWKSFVREWGVLKYLQVE 2070
ALAR+AVALGDAK LR LE S + V+ V G S WN+ SELLE GAS L+D GK QMLELSKP RRRPWSGSSAIPGGS+ELSACRRGLPC RPRTATG GS H + + SR +S A AA D+ H+ D+I GDSLSTL RSS+ N + ALTVVAG G + ++GL ECWRCHREMAIL+ ++GS G +P + G G +H +H+S G ++ G RG G A +R P SP A+T L E S F L + ++ S ++RD+ D G + Q LELS HV RHN GE EE+ +++ R + G SP QR RR +G+ +A GA+ R +RN RA+ G GR +S ++RRFF DEVPEYVVGRRRMLWAQ+SAE+YARR LKRRREEIA+PRR KMAAA + EKR+ + EL+ KERVRNSPLRW RDGRP SP + PAA +S+ SSPS+ G + RP+TAGPYGGRSC+KCDPR W+RGEF+G LGG TG R G ++E EG LWN V+DRYR+LRPWT P +DSELWW KPR++ +G AVVVKV A+G W++F+REWGVLKYLQ E
Sbjct: 26 ALARRAVALGDAKALRRNLEASLGGNGYDVSTAVDGLSGWNYETASELLEHGASTALRDNFGKMAQQMLELSKPVRRRPWSGSSAIPGGSRELSACRRGLPCTSRPRTATGISGGSAHAREAPSASSRGQKSVAAAETAAADRHLHHDRDQIDVGDSLSTLPPRSSVANAKEGSVSALTVVAGAGR---------DGAVTSGLATSPTECWRCHREMAILDADDRHNQRVAGSCTGAASTSPYDARG-GLDHSSHYSSSGA----DNEAAGPRGDTTGGGVAYASRTGVAPRQDQLLRPPSPGAAETLLAEASGFGTLTTDGSPTSVGGXXXXXXXXDASHASRDR-ADVAGRPVSQAALQEXXXXXXXANQLLELSFLHVRRHNAGEGEESASDNLAXXXXXXXXXXXXXXXXXXXRDRISGR---SPNQRSRRH--AGKRGGRR-----RATTGAAGRRARKRNDRARGGDGAGRGASATGQQRRFFCPGDEVPEYVVGRRRMLWAQRSAEQYARRVSDLKRRREEIASPRRQKMAAAADREKRRAQRELESKERVRNSPLRWDRDGRPCSSPA---ALPAAQSSTEP------SSPSSPARGHHQRRPSTAGPYGGRSCLKCDPRRWYRGEFMGGLGGLGTGSRPPPRRGGRQE-----DEGEGGRLWNRIVSDRYRLLRPWTTSPLDDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEE 726
BLAST of mRNA_H-canaliculatus_F_contig1223.1914.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE) HSP 1 Score: 414 bits (1064), Expect = 1.090e-122 Identity = 368/939 (39.19%), Postives = 438/939 (46.65%), Query Frame = 1
Query: 121 NFPAVSELLERGASADLQDTLGKTPPQMLELSKPARRRPWSGSSAIPGGSKELSACRRGLPCPDRPRT-----------------------------ATGNGSGSMHDHRSTVSGSREARSSLAR--AAKDQPSTHEEDKIVAGDSLSTLQ-RSSIMNVHDDGA--LTVVAGKGTGHGIGGGRGETRASNGLGECWRCHREMAILEG--RHHAPHMISGSSNGPG-VAPLASDGEGNEHENHHSVWGGGTLGSSDVEGDRGMDKGHSCAGLARD---------YSPLSPE-ADTRLDELSAF-EMLASSSRSSAPKCVSVSGSARD----------QSVDSVGPSLRQDEQASS-LELSDSHVCRHN-GEEEETLGESVMKARGRR-------------------RLNTHRSNVVGMKRGSPTQRIRRRRCSGRXXXXXXXXGVKALGGASPGRVGRRNGRAKSGLRDGRASSERRRFFHQEDE-------------------VPEYVVGRRRMLWAQKSAEKYARRTDSLKRRREEIATPRRVKMAAAVEDEKRKMEEELKRKERVRNSPLRWGRDGRPQGSPIRPSSSPAAYASSHNTPTSTLSSPSASPFGRQRH--RPATAGPYGGRSCIKCDPRWWFRGEFIGELGGPTGLLEGLRAGDQRERG-----QGDTEGGDDSLWNMTVTDRYRILRPWTKLPHEDSELWWVKPRMNRNGKAVVVKVAAEGSDSEETWKSFVREWGVLKYLQ---------------------------------------------------------------VESFAVQACRAICWLHRCGLISGDVNPSNFVLLESFAGRGNDNPSRGRTRGGGSVGTFGKGGAGVRC------------------DGELRLATGRSVARRDDATRACPRHPLLEVRFSTPAHP 2379
N SELLERGAS+ L+D GKT QMLELSKP RRRPW+GSSAIPGGS+ELSACRRGLPC RPRT ATG GS H + + SR +S A AA D+ H+ +I GDSLSTL RSS+ N + A LTVVAG G G + + ECWRCHREMAIL+ RHH ++GS G +P + G G +H +++S G ++ G RG G +R P SP A+T L E SAF M S +S V G A + V ++E+A+ LELS HV RHN GE +E+ E++ AR R R RS G+ RG XXXXXXXX ++RRFF DE VPEYVVGRRRMLWAQ+SAE+YARR LKRRREEIA+P + EKR+ EL+RKER+RNSPLRWGRDGRP SP A A+ +T S SSP+ R H RP+TAGPYGGRSC+KCDPR W+RGEF+GELGG L AG + D EGG LWN TV+DRYR+LRPWT P ++ ELWW KPR+ +G AVVVKV A+G W++F+REWGVL+YLQ VES A QACRA+ WLH GLISGDV P NF+LL RG R T GG KG + VR + ELRL GRS ARR DA CPRHPLLE A P
Sbjct: 166 NHETASELLERGASSALRDNFGKTAQQMLELSKPVRRRPWTGSSAIPGGSRELSACRRGLPCTSRPRTGAMHTGSSGLIPQFVPLLPPTALWLRAYTATGICGGSAHAREAASASSRGQKSVAAAETAAADRHLHHDRGQIDVGDSLSTLPPRSSVANAKEGSASALTVVAGAERD-----GAGTSGLATSPTECWRCHREMAILDADDRHH--QRVAGSYTGAASTSPYDARG-GLDHNSYYSSSGA----DNEAAGPRGDTAGGGVTYASRTGVAPRQDQLRRPPSPGVAETLLAEASAFGTMTTDGSPTSGGGGGGVDGDASHAPRGRADVAGRPVSQAAVQEEEEEEANQILELSFLHVRRHNAGEGKESASENLAAARERXXXXXXXXXXXXXXXXRISGRSPNQRSQRYGVVRGXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXQQRRFFCPGDEARTRVRCNGKTWGQFTIVEVPEYVVGRRRMLWAQRSAERYARRVSDLKRRREEIASPXXXXXXXXXDREKRRAHRELERKERIRNSPLRWGRDGRPCSSPA------ALQATQSSTEPSAASSPA-----RDYHQRRPSTAGPYGGRSCLKCDPRRWYRGEFMGELGG-------LGAGSPXXXXXXXXXEDDGEGG--RLWNKTVSDRYRLLRPWTTSPLDEGELWWAKPRLCGSGTAVVVKVLADGKRDATGWEAFIREWGVLEYLQEEGRVSGREPLSVGLVCAFETERSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQVESLATQACRAVGWLHHHGLISGDVTPDNFILLS----RGGGGTGRSSTSGGCHSD---KGHSPVRSPSRGQGXXXXXXXXXXXXESELRLVAGRSAARRPDAAGGCPRHPLLEPFDKAHASP 1047 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1223.1914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1223.1914.1 >prot_H-canaliculatus_F_contig1223.1914.1 ID=prot_H-canaliculatus_F_contig1223.1914.1|Name=mRNA_H-canaliculatus_F_contig1223.1914.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=737bp MLELSKPARRRPWSGSSAIPGGSKELSACRRGLPCPDRPRTATGNGSGSMback to top mRNA from alignment at H-canaliculatus_F_contig1223:6150..11829+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1223.1914.1 ID=mRNA_H-canaliculatus_F_contig1223.1914.1|Name=mRNA_H-canaliculatus_F_contig1223.1914.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5680bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1223:6150..11829+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1223:6150..11829+ >mRNA_H-canaliculatus_F_contig1223.1914.1 ID=mRNA_H-canaliculatus_F_contig1223.1914.1|Name=mRNA_H-canaliculatus_F_contig1223.1914.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4422bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1223:6150..11829+ (Hapterophycus canaliculatus Oshoro5f female)back to top |