mRNA_H-canaliculatus_F_contig10164.191.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10164.191.1
Unique NamemRNA_H-canaliculatus_F_contig10164.191.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10164.191.1 vs. uniprot
Match: A0A6H5L840_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L840_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.400e-27
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:    1 LPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFGGRPGAADALPWIRSHHGDKV-----------NGNNLHDVSLVHWLHGIRDDAATGAYRVSFGKAHTL 318
            L GLPLE+L+  ILV F  PRD+A + A SRGLRSLR+G V+ +L+ LF GRPGA +A+PWIRSHHG K            NG +  DVSLV WL G+RD +ATGAYR S G+ H+L
Sbjct:    7 LSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGRPGAGNAIPWIRSHHGGKDKXXXXXNKLKGNGGSHDDVSLVDWLCGLRDMSATGAYRASLGETHSL 123
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BLAST of mRNA_H-canaliculatus_F_contig10164.191.1 vs. uniprot
Match: D8LDL9_ECTSI (Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.590e-26
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:    1 LPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFGGRPGAADALPWIRSHHGDKV-------------NGNNLHDVSLVHWLHGIRDDAATGAYRVSFGKAHTL 318
            L GLPLE+L+  ILV F  PRD+A + A SRGLRSLR+G V+ +L+ LF G+PGA +A+PWIRSHHG K              NG ++ DVS+V WL G+RD +ATGAY  S G+ H+L
Sbjct:    5 LSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAIPWIRSHHGGKDXXXXXXXXNKLKGNGGSVDDVSVVDWLCGLRDTSATGAYSASLGETHSL 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10164.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L840_9PHAE1.400e-2756.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDL9_ECTSI1.590e-2652.94Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10164contigH-canaliculatus_F_contig10164:1671..3563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D8LDL9
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-15_000090.1
Exons2
Model size1520
Cds size456
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10164.191.1prot_H-canaliculatus_F_contig10164.191.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10164 1671..2501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928645.9593625-CDS-H-canaliculatus_F_contig10164:1670..17621622928645.9593625-CDS-H-canaliculatus_F_contig10164:1670..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10164 1671..1762 +
1696845511.3468275-CDS-H-canaliculatus_F_contig10164:1670..17621696845511.3468275-CDS-H-canaliculatus_F_contig10164:1670..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10164 1671..1762 +
1622928645.9730694-CDS-H-canaliculatus_F_contig10164:2137..25011622928645.9730694-CDS-H-canaliculatus_F_contig10164:2137..2501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10164 2138..2501 +
1696845511.3588285-CDS-H-canaliculatus_F_contig10164:2137..25011696845511.3588285-CDS-H-canaliculatus_F_contig10164:2137..2501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10164 2138..2501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928645.9838703-UTR-H-canaliculatus_F_contig10164:2501..35631622928645.9838703-UTR-H-canaliculatus_F_contig10164:2501..3563Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10164 2502..3563 +
1696845511.3673031-UTR-H-canaliculatus_F_contig10164:2501..35631696845511.3673031-UTR-H-canaliculatus_F_contig10164:2501..3563Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10164 2502..3563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10164.191.1

>prot_H-canaliculatus_F_contig10164.191.1 ID=prot_H-canaliculatus_F_contig10164.191.1|Name=mRNA_H-canaliculatus_F_contig10164.191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
LPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFG
GRPGAADALPWIRSHHGDKVNGNNLHDVSLVHWLHGIRDDAATGAYRVSF
GKAHTLGRRRVEAREVEEQNGTGVKKTSQQDRRSSQMRHCPSQGAFVNSI
Q*
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mRNA from alignment at H-canaliculatus_F_contig10164:1671..3563+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10164.191.1 ID=mRNA_H-canaliculatus_F_contig10164.191.1|Name=mRNA_H-canaliculatus_F_contig10164.191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10164:1671..3563+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCCGGCCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGACTTT
CTGCGGCCCGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGGTGCGTGT
ATTAAATCTCCTGCGTAGCGGTTGTGGTCCACCTGAGTTCAACCAACAAG
CGATAGCGCCGTTCGTCTTATGTTCTTGCTCGATGGAGTTGGACTTCCAG
GGGTTGGTGCACCACAGGTTTGCGAAGGTTGTTCAGCTGGGCGTGAGCGT
TGATGGATTTTTGCCAGGTTTCCTGCCGACCGCTTTAGGTTTTCGATTCA
CGCGGCGTTTGGTGTCAAGTGCAGGACGTCGGACGTCGATTTTGTGTTCC
GATGCCGCGGTAGCGTAAGCGCGTGGCCTTCATTACGCGCACGCCATGCT
CTCGCACACACCCATAAACACGAATCCCCGGGCCATGTTTGCACCGCTAC
CATATGTACAACGACAGCGGTCTCCGGTCTCTTCGTCAAGGGTGCGTCAC
TAGTCTTCTGGAAAAGCTGTTCGGCGGAAGACCCGGGGCAGCTGATGCCC
TCCCATGGATCCGCTCGCACCACGGCGACAAGGTCAACGGCAACAATCTG
CATGACGTCAGCCTGGTGCATTGGTTGCACGGCATAAGGGACGACGCGGC
GACGGGGGCCTACCGCGTCTCGTTTGGAAAGGCCCACACCCTCGGTAGGA
GGAGAGTAGAGGCAAGGGAGGTGGAGGAACAGAATGGGACAGGAGTTAAA
AAAACAAGTCAACAAGACCGAAGGAGTTCCCAGATGAGACACTGTCCATC
TCAAGGGGCTTTTGTCAATTCCATTCAGTGAGGGGTCCATTCGAGTGACA
GGATGAAATTGTGTATCAGTAGGCAAGTGGTGGACAACTGCGCGAAAAAC
ATGGGATGGGGGATGGATAAAAACAGAGAGGTGGTTTTTAAGAGATGGAT
GGGATGTGGAAGAGAACAACAACGTATGCACCGCGAGATCTTTGATACCT
CCTGCCTGTGATGATTCGCCGTGTGAGAGAATTCGCTGCCCGGGAGCTTG
GTGATCCATCGATTGATCCATCGGTCGAACCCTTGATGTCTGGTCACATG
TCTAATCCTTCATTGTCTTCCAGCAGTGGACCGAAATTACTCGAATTTTA
CACACCTGAGAACACGCATACCGTTTGAGCTCGTCAGGGACACCGTGGTG
GGATAAGTCGCCGTCCCATATCTCGGTGCTGCTGCACCTGACAGTTCCTT
TCCGCTACGACCGTTTTGTCCACGCACCCCGTCGTCGGCTTTTGATTACG
GGGCCGTCGTTGTCCACGAAGCTCAGCCGCCAAGGAGCGTGGAAGGGTAG
AGTGCCACAGGGGTGGCCACTGGGTGTGTGGCGTTCACTGGAGCTGTTTG
ACTTGTTTCGACGAGGCTTCGAAGAGCCGAACTGCTTTCGCATCTTTGGG
CGTGTTTCGTCTCCAAGCGTGTGCTGCTTCCGGGGGTTCGAGCGAAAAGC
CTACGCATGAAAACCTCAATCATGAGATGGCAAAGGGACGGGCACAGCAC
GTTGCAACGATAGCATGCAGCATGCATGGCGATGTCAGTGGCACATCCAT
GGGAATAGTACCCTTCATGACGATGGCGACGGCGATCGTCATGACCCCAC
ACTTACCGCAGGGACGGAGCCGCTCGTCGGGCAGGATCGCGGGCGCAGAC
CACATTTCAGCGTCGCACCACCGAGTATGCCTCTGCCAAGGCCCGAACTA
AAAATGTACCCCAACGCGAAACAACCGATGTTTATTGCATTTTCCAGTCG
TGCTCGCTCGCGGTGCCTCTGTCGATGACGATGGAGCTTTTTATGCCCTA
TCCTACATTTAACGACGTAGGTGGTTCTGCCCGCACTTTCGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10164:1671..3563+

>mRNA_H-canaliculatus_F_contig10164.191.1 ID=mRNA_H-canaliculatus_F_contig10164.191.1|Name=mRNA_H-canaliculatus_F_contig10164.191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10164:1671..3563+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCCGGCCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGACTTT
CTGCGGCCCGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGCTCCCCGG
CCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGACTTTCTGCGGCC
CGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGCGGTCTCCGGTCTCTT
CGTCAAGGGTGCGTCACTAGTCTTCTGGAAAAGCTGTTCGGCGGAAGACC
CGGGGCAGCTGATGCCCTCCCATGGATCCGCTCGCACCACGGCGACAAGG
TCAACGGCAACAATCTGCATGACGTCAGCCTGGTGCATTGGTTGCACGGC
ATAAGGGACGACGCGGCGACGGGGGCCTACCGCGTCTCGTTTGGAAAGGC
CCACACCCTCGGTAGGAGGAGAGTAGAGGCAAGGGAGGTGGAGGAACAGA
ATGGGACAGGAGTTAAAAAAACAAGTCAACAAGACCGAAGGAGTTCCCAG
ATGAGACACTGTCCATCTCAAGGGGCTTTTGTCAATTCCATTCAGTGACG
GTCTCCGGTCTCTTCGTCAAGGGTGCGTCACTAGTCTTCTGGAAAAGCTG
TTCGGCGGAAGACCCGGGGCAGCTGATGCCCTCCCATGGATCCGCTCGCA
CCACGGCGACAAGGTCAACGGCAACAATCTGCATGACGTCAGCCTGGTGC
ATTGGTTGCACGGCATAAGGGACGACGCGGCGACGGGGGCCTACCGCGTC
TCGTTTGGAAAGGCCCACACCCTCGGTAGGAGGAGAGTAGAGGCAAGGGA
GGTGGAGGAACAGAATGGGACAGGAGTTAAAAAAACAAGTCAACAAGACC
GAAGGAGTTCCCAGATGAGACACTGTCCATCTCAAGGGGCTTTTGTCAAT
TCCATTCAGTGA
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