mRNA_H-canaliculatus_F_contig12219.1905.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12219.1905.1
Unique NamemRNA_H-canaliculatus_F_contig12219.1905.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.330e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VLNGQSWVLVDGAILDV +FA RHPGGRRLI+NALGTDITQELLG
Sbjct:  471 KVLNGQSWVLVDGAILDVSEFAQRHPGGRRLIINALGTDITQELLG 516
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.910e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VLNGQSWVLVDGAILDV DFA RHPGG+RLI+NALGTDITQELLG
Sbjct: 1161 KVLNGQSWVLVDGAILDVSDFAKRHPGGQRLIINALGTDITQELLG 1206
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.810e-18
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VL+GQSW++VD A+LDV DFAHRHPGGRRLILNALGTD+TQELLG
Sbjct:  895 KVLSGQSWLMVDEAVLDVSDFAHRHPGGRRLILNALGTDVTQELLG 940
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: D8LFE2_ECTSI (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 9.330e-18
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VLN QSW+ VD AILDV +FA RHPGGRRLILNALGTD+T E+LG
Sbjct:   10 KVLNSQSWLFVDSAILDVSEFAARHPGGRRLILNALGTDVTAEILG 55
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.400e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VLNGQSW+LVDGAILDV +F  RHPGGRRLILNALGTD+T ELLG
Sbjct:  989 KVLNGQSWLLVDGAILDVSEFTARHPGGRRLILNALGTDVTAELLG 1034
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.350e-17
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VL+GQSW++VD A+LDV DFA RHPGGRRLILNALGTD+TQEL+G
Sbjct:  890 KVLSGQSWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELIG 935
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.670e-17
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VL+GQ+W++VD A+LDV DFA RHPGGRRLILNALGTD+TQELLG
Sbjct:  891 KVLSGQTWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELLG 936
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.120e-16
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            QVLNG+SWV+VDGA+L+V DFA RHPGG RLI+NA+GTD+T E LG
Sbjct:  197 QVLNGRSWVIVDGAVLNVSDFAERHPGGMRLIINAMGTDVTSEFLG 242
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-15
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VLNG+SWV+VDGA+L+V DFA RHPGG RLI+NA+GTD+T E LG
Sbjct:  126 KVLNGRSWVIVDGAVLNVSDFAKRHPGGIRLIINAMGTDVTSEFLG 171
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BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Match: A0A6H5JUS3_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS3_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG 138
            +VLNGQSW+LVD AILDV +FA RHPGG RLI+NA GTD+T ELLG
Sbjct:   76 KVLNGQSWLLVDDAILDVPEFAARHPGGWRLIINAPGTDVTDELLG 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12219.1905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FX04_ECTSI4.330e-1989.13Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE5.910e-1989.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ31_9PHAE2.810e-1882.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE2_ECTSI9.330e-1876.09Cytochrome b5 heme-binding domain-containing prote... [more]
D8LFE6_ECTSI3.400e-1782.61Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI6.350e-1778.26Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI8.670e-1778.26Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JX59_9PHAE4.120e-1673.91Cytochrome b5 heme-binding domain-containing prote... [more]
D8LB74_ECTSI3.660e-1571.74Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JUS3_9PHAE1.290e-1476.09Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12219contigH-canaliculatus_F_contig12219:156..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue4.9e-16
Seed eggNOG ortholog2880.D7FX04
EggNOG free text desc.DOMON domain
EggNOG OGs2D0T2@1,2SFBV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.2622657-CDS-H-canaliculatus_F_contig12219:155..2931622928936.2622657-CDS-H-canaliculatus_F_contig12219:155..293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12219 156..293 +
1696845619.5840065-CDS-H-canaliculatus_F_contig12219:155..2931696845619.5840065-CDS-H-canaliculatus_F_contig12219:155..293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12219 156..293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12219.1905.1prot_H-canaliculatus_F_contig12219.1905.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12219 156..293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12219.1905.1

>prot_H-canaliculatus_F_contig12219.1905.1 ID=prot_H-canaliculatus_F_contig12219.1905.1|Name=mRNA_H-canaliculatus_F_contig12219.1905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=46bp
QVLNGQSWVLVDGAILDVGDFAHRHPGGRRLILNALGTDITQELLG
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mRNA from alignment at H-canaliculatus_F_contig12219:156..293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12219.1905.1 ID=mRNA_H-canaliculatus_F_contig12219.1905.1|Name=mRNA_H-canaliculatus_F_contig12219.1905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12219:156..293+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGCTGAACGGGCAGAGCTGGGTGCTGGTGGACGGGGCGATCCTGGA
CGTGGGCGACTTTGCGCATAGACACCCGGGGGGCAGGAGGCTCATCCTGA
ACGCCCTGGGCACCGACATAACGCAGGAGCTGCTCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12219:156..293+

>mRNA_H-canaliculatus_F_contig12219.1905.1 ID=mRNA_H-canaliculatus_F_contig12219.1905.1|Name=mRNA_H-canaliculatus_F_contig12219.1905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12219:156..293+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGCTGAACGGGCAGAGCTGGGTGCTGGTGGACGGGGCGATCCTGGA
CGTGGGCGACTTTGCGCATAGACACCCGGGGGGCAGGAGGCTCATCCTGA
ACGCCCTGGGCACCGACATAACGCAGGAGCTGCTCGGCCAGGTGCTGAAC
GGGCAGAGCTGGGTGCTGGTGGACGGGGCGATCCTGGACGTGGGCGACTT
TGCGCATAGACACCCGGGGGGCAGGAGGCTCATCCTGAACGCCCTGGGCA
CCGACATAACGCAGGAGCTGCTCGGC
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