mRNA_H-canaliculatus_F_contig12217.1903.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12217.1903.1
Unique NamemRNA_H-canaliculatus_F_contig12217.1903.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12217.1903.1 vs. uniprot
Match: A0A6H5J9F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F1_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 9.720e-30
Identity = 95/170 (55.88%), Postives = 109/170 (64.12%), Query Frame = 1 
Query:   16 SRRLANRRGAARVLAAAEGRRREXXXXXXXXXXXXA-EARGMLVGHGEADRAALEGAQEAARRYAEALDRGQARVEQAEAERLRAREATAGLLARADELTRKAEEEAAQGARGASSAESERAALXXXXXXXXXXXXXXEVILREREREAAALRRALAAEDSKRQEKRLLR 522
            +RR A +  AARVL +AE R+R             A EARG L+G  EAD+AALEGA EAARRY EA++RGQARVE AEA+R R + + A LL R DELTRK        AR ASSAESERAAL               VIL EREREAA LRRALAA+D+K +E RLLR
Sbjct:    9 TRRPARQTAAARVLVSAEARQRAAAAKAAERRERAAAEARGKLLGQEEADQAALEGALEAARRYREAVERGQARVEDAEADRRRMQASAAKLLERVDELTRKXXXXXXXXAREASSAESERAALSLAASMAEARAREMMVILDEREREAAKLRRALAAKDAKLKE-RLLR 177
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BLAST of mRNA_H-canaliculatus_F_contig12217.1903.1 vs. uniprot
Match: D7FLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.800e-9
Identity = 70/170 (41.18%), Postives = 79/170 (46.47%), Query Frame = 1 
Query:   16 SRRLANRRGAARVLAAAEGRRREXXXXXXXXXXXXA-EARGMLVGHGEADRAALEGAQEAARRYAEALDRGQARVEQAEAERLRAREATAGLLARADELTRKAEEEAAQGARGASSAESERAALXXXXXXXXXXXXXXEVILREREREAAALRRALAAEDSKRQEKRLLR 522
            +RR A +  AARVL +AE R+R             A EARG L G  EAD AALEGA EAARRY EA++RGQARVE                                              AL               VIL EREREAA LRRALAA+D+K +EKRLLR
Sbjct:  927 TRRPARQTAAARVLVSAEARQRAAAAKAAERREWAAAEARGKLRGQEEADEAALEGALEAARRYGEAVERGQARVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSLAASTAEARAREMMVILDEREREAAKLRRALAAKDAKLKEKRLLR 1096
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12217.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9F1_9PHAE9.720e-3055.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLL9_ECTSI4.800e-941.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12217contigH-canaliculatus_F_contig12217:1031..3315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size650
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12217.1903.1prot_H-canaliculatus_F_contig12217.1903.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12217 1031..3315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.0163512-CDS-H-canaliculatus_F_contig12217:1030..13391622928936.0163512-CDS-H-canaliculatus_F_contig12217:1030..1339Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12217 1031..1339 -
1696845619.5096467-CDS-H-canaliculatus_F_contig12217:1030..13391696845619.5096467-CDS-H-canaliculatus_F_contig12217:1030..1339Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12217 1031..1339 -
1622928936.0668044-CDS-H-canaliculatus_F_contig12217:2198..23601622928936.0668044-CDS-H-canaliculatus_F_contig12217:2198..2360Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12217 2199..2360 -
1696845619.5198643-CDS-H-canaliculatus_F_contig12217:2198..23601696845619.5198643-CDS-H-canaliculatus_F_contig12217:2198..2360Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12217 2199..2360 -
1622928936.087358-CDS-H-canaliculatus_F_contig12217:3138..33151622928936.087358-CDS-H-canaliculatus_F_contig12217:3138..3315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12217 3139..3315 -
1696845619.5333834-CDS-H-canaliculatus_F_contig12217:3138..33151696845619.5333834-CDS-H-canaliculatus_F_contig12217:3138..3315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12217 3139..3315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12217.1903.1

>prot_H-canaliculatus_F_contig12217.1903.1 ID=prot_H-canaliculatus_F_contig12217.1903.1|Name=mRNA_H-canaliculatus_F_contig12217.1903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=216bp
DRRLRSRRLANRRGAARVLAAAEGRRREAEKAAAAREKAAAEARGMLVGH
GEADRAALEGAQEAARRYAEALDRGQARVEQAEAERLRAREATAGLLARA
DELTRKAEEEAAQGARGASSAESERAALALEVSTAEARAREMEVILRERE
REAAALRRALAAEDSKRQEKRLLRPHGGPPAGAGAGAKPASVPPHPPGAM
LPRSGAGVGDEGGDGG
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mRNA from alignment at H-canaliculatus_F_contig12217:1031..3315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12217.1903.1 ID=mRNA_H-canaliculatus_F_contig12217.1903.1|Name=mRNA_H-canaliculatus_F_contig12217.1903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2285bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12217:1031..3315- (Hapterophycus canaliculatus Oshoro5f female)
GACCGCCGCCTACGCTCCAGGAGGCTCGCCAACCGCCGCGGCGCCGCCCG
CGTCCTCGCGGCTGCCGAGGGTCGCCGCAGAGAGGCCGAGAAAGCGGCCG
CCGCTCGGGAGAAAGCTGCGGCGGAAGCCCGCGGTATGCTTGTCGGCCAT
GGAGAGGCTGATCGGGCGGCGCTGGAGGTGGGAGACGGCCGCGTTTCTCG
CCGCAACTTGCGAGCCGTTGATATGTTTTTTGTTGTTGATGTCGTCTGCC
AAGAAGTGAAAATCGATTGCCTTGAATTTTCATGGGTTAGATAAATTTGG
ATGTGCGTGTATCTACGAAGAGTCCTTCTAACTAGCATCAGTGAAGTGAC
AAGGCTAGTTTTTTGTAAAGACCGTCCACCCGATTTCTCTTCCCAAAAAC
AAAAAACAACCGATAAAAATAAATCACACACATACTCTCTTTTTTATAGA
AAACGTAACAACACCGTTAAAACACCTCCTGAGGTTCGTCGTTGTTGTTC
AGTAGCGCTGGTGCTGTTTTTGTTGGCGTTGATGAAGAGAGCATCGTATC
GTTGTCAATTTTTCTTCGTTCCTCTCAACCACCTTGTCAACCCGGACGTA
TCAACGGAATGCAAGTGTGGTCCGAAAAATGTCGACGGGCCGATCCATCA
CCACCATGATCGTTCCGTGTTTTGCCGGCGTTTCCCCTCTTCCCACGGTG
CTCAAGAGGGAAGGGAGGCCCCAGAAGCGCAAACCTCCCAAACGACACAA
ACGGGAGGGAATCAAACGAGACAAATCCTCCGAAACTTTCCGTACCCCGT
ATCATGCAGAGCAAAGGCCATTCAAAGCATCCCTGCCTCTCCATTCAGGC
TTTTGCATCCTGCCCGGCAGCGCAGTGTTTCGCCGACCATCCGTCATCCT
GAAATATAATCTCACTCCCACCCCCCCCCGCCACCCTGCGCCGCCTCCGC
CGAAGGGTGCTCAAGAGGCAGCGAGGCGGTACGCCGAAGCCCTCGACCGT
GGGCAGGCGCGCGTGGAGCAGGCGGAGGCCGAGAGGCTGCGGGCGCGGGA
GGCGACTGCGGGCCTGTTGGCGAGGGCGGACGAGCTGACCAGGAAAGCCG
AGGAGGAGGCCGCTCAGGTGAAGCGGTGGGTGTGCACATGGACGGTCACG
CCACCCGCTTCAAACGTTTGTGCAGACGGGGGCGCCGACTTCGAGCCCGG
GCTGCTCTGGGCGTTGCGCCCGTGAGAAGAAAGGGAAGTGTCTCGTCTGA
CACCATAAAATATTGTCCCGCCGTACTGAGCCCTCGCTGAAAGGAATTCA
ACCATCACCCTCCCGAGTCGCTTGTCTCAGCGGAGATTATTCCTCTGATG
TTGTTGACTCTTTCTTGACAAAAAAGAGGCGACGAAGGGCGCGCCTGCAA
GGGGATGAGTAGCTGCGTACGCGTATCTCGAGATTTTGGTTGGGGCGGTG
TCGGCCGACCGTCATGTTTTTACATCGAGTTGGATCACGGCCGCATTTTT
ATGGGAAGACACAACAACACCATGGGAACACCTCCCGAGTTACGTCGGGT
GAGACGCGCCTCGAGGTCCTGCTCAATTCCAGACAACGAGCGTTCCTTTG
TGTATGGTCTTTCTGAACAAAAACATTCACAGAAAAAGGCTGGGAAGCGT
AGTGCAGTGTGCGGATGGCGTTTCGTGTTGGTCGGTAGGCGAGGGCGAGG
GTACGGAGGAGAAGAAGCGGCATGTGCACCCGCGAAGACGGCTGGACCCG
TGCCGGTTGCGAACGCGGACGGGGACGAACGGACCCGCCAAACCTTTTAC
CGCCATGGTACACAGGGCTCGCGCCTGCGTGTTCCGTGGTCCCTTTTTTT
TGTGTCGTCGCCCACGCTCTCTGCTGCTGCTCTCTCTCTCTTGGTCGCCG
CCACATGCACACCCTCCGAATTTCTATTTCAATCAACAACAACGACAACA
ACAACATCAATTCCAATGAACTTAAGGGTGCCCGGGGCGCCTCCAGCGCC
GAGAGCGAGCGCGCGGCGCTCGCCCTGGAGGTTTCCACCGCGGAGGCGAG
GGCTCGGGAGATGGAGGTCATCCTGCGCGAGCGGGAGAGGGAGGCGGCGG
CGCTGAGGCGAGCGCTGGCCGCCGAGGACTCGAAGCGGCAGGAAAAACGC
CTCCTTCGGCCCCACGGAGGTCCGCCGGCGGGAGCGGGGGCGGGGGCGAA
ACCGGCATCGGTTCCGCCGCACCCGCCAGGAGCGATGCTTCCGCGGTCCG
GAGCCGGGGTCGGGGATGAGGGGGGTGATGGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12217:1031..3315-

>mRNA_H-canaliculatus_F_contig12217.1903.1 ID=mRNA_H-canaliculatus_F_contig12217.1903.1|Name=mRNA_H-canaliculatus_F_contig12217.1903.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1296bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12217:1031..3315- (Hapterophycus canaliculatus Oshoro5f female)
GACCGCCGCCTACGCTCCAGGAGGCTCGCCAACCGCCGCGGCGCCGCCCG
CGTCCTCGCGGCTGCCGAGGGTCGCCGCAGAGAGGCCGAGAAAGCGGCCG
CCGCTCGGGAGAAAGCTGCGGCGGAAGCCCGCGGTATGCTTGTCGGCCAT
GGAGAGGCTGATCGGGCGGCGCTGGAGGACCGCCGCCTACGCTCCAGGAG
GCTCGCCAACCGCCGCGGCGCCGCCCGCGTCCTCGCGGCTGCCGAGGGTC
GCCGCAGAGAGGCCGAGAAAGCGGCCGCCGCTCGGGAGAAAGCTGCGGCG
GAAGCCCGCGGTATGCTTGTCGGCCATGGAGAGGCTGATCGGGCGGCGCT
GGAGGGTGCTCAAGAGGCAGCGAGGCGGTACGCCGAAGCCCTCGACCGTG
GGCAGGCGCGCGTGGAGCAGGCGGAGGCCGAGAGGCTGCGGGCGCGGGAG
GCGACTGCGGGCCTGTTGGCGAGGGCGGACGAGCTGACCAGGAAAGCCGA
GGAGGAGGCCGCTCAGGGTGCTCAAGAGGCAGCGAGGCGGTACGCCGAAG
CCCTCGACCGTGGGCAGGCGCGCGTGGAGCAGGCGGAGGCCGAGAGGCTG
CGGGCGCGGGAGGCGACTGCGGGCCTGTTGGCGAGGGCGGACGAGCTGAC
CAGGAAAGCCGAGGAGGAGGCCGCTCAGGGTGCCCGGGGCGCCTCCAGCG
CCGAGAGCGAGCGCGCGGCGCTCGCCCTGGAGGTTTCCACCGCGGAGGCG
AGGGCTCGGGAGATGGAGGTCATCCTGCGCGAGCGGGAGAGGGAGGCGGC
GGCGCTGAGGCGAGCGCTGGCCGCCGAGGACTCGAAGCGGCAGGAAAAAC
GCCTCCTTCGGCCCCACGGAGGTCCGCCGGCGGGAGCGGGGGCGGGGGCG
AAACCGGCATCGGTTCCGCCGCACCCGCCAGGAGCGATGCTTCCGCGGTC
CGGAGCCGGGGTCGGGGATGAGGGGGGTGATGGCGGGGGTGCCCGGGGCG
CCTCCAGCGCCGAGAGCGAGCGCGCGGCGCTCGCCCTGGAGGTTTCCACC
GCGGAGGCGAGGGCTCGGGAGATGGAGGTCATCCTGCGCGAGCGGGAGAG
GGAGGCGGCGGCGCTGAGGCGAGCGCTGGCCGCCGAGGACTCGAAGCGGC
AGGAAAAACGCCTCCTTCGGCCCCACGGAGGTCCGCCGGCGGGAGCGGGG
GCGGGGGCGAAACCGGCATCGGTTCCGCCGCACCCGCCAGGAGCGATGCT
TCCGCGGTCCGGAGCCGGGGTCGGGGATGAGGGGGGTGATGGCGGG
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