mRNA_H-canaliculatus_F_contig12214.1902.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12214.1902.1
Unique NamemRNA_H-canaliculatus_F_contig12214.1902.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.820e-64
Identity = 205/442 (46.38%), Postives = 250/442 (56.56%), Query Frame = 1 
Query:    1 CMDGLEGVLADDGVTCCLAACGQCGGSGCSDIEGTEG-DDCCIGDITQAGLTCGVDGVVAPCLLDESITATMSPSIAPAAASTAQPSAPTPAGTVQPPTGQXXXXXXXXXXXXXXXXAQVAVAVTTAPLQ---------TAATLDPT--------PAATTIVPATXXXXXXXXXXXXXXXXXXXXXXXXTE------ASSTCDNGYPGWQTQEACCTEFCGQCGGSGCGALGSADCCVDNVMAAQLVCGIDTLEAPCIV-----PVLGDGETYAPYAAPTPPXXXXXX------------------------AATAAPIGADATSQPSGSRGVDGATEEPTP-SATGNDTDATGTPAAPTSAPVRTXXXXXXXXXTTPECTEGVEGFAHDVVCCPTACGQCGGSGCENIVGTAGASDCCSDAILISGEMCSDNGGVAPCILG 1164
            C+ G+EG+L+ +   CC+AACG CGGSGCSD+EGT+G  DCC+ DI  + +TCGVD  VAPC++D  I  T      P+A   A P+              XXXXXXXXXXXXXXXX       TTAP Q           ++  PT        PAA  +V A  XXXXXXXXXXXXXXXXXXX    T       ASS C+NGYPGWQ+ EACC+EFCGQCGGSGCG LGSA CC DN+++A LVCG+D LEAPCI+       L +G T AP  A    XXXXXX                         AT +P+       P+ S G   A +E  P S T     A GT  AP++                PEC +G+EGF H V CC  +CGQCGG+GCEN+ G  GAS+CCS  +L +  +CS++G VAPC+LG
Sbjct:    7 CVAGVEGILSSNEEVCCIAACGMCGGSGCSDVEGTDGGSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITT------PSATEAATPA-----------PAXXXXXXXXXXXXXXXXXXXXXXXTTTAPGQXXXXXXXXIAPSSTSPTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTPVAPVAGASSYCENGYPGWQSNEACCSEFCGQCGGSGCGELGSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPLAEGVT-APATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGSEAPQESVPPSVTPPVGGAVGTTPAPSA----------------PECDDGIEGFRHGVACCSVSCGQCGGAGCENLEG--GASECCSHDVLATNNLCSESG-VAPCVLG 411
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: D7G8G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G7_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.340e-45
Identity = 189/449 (42.09%), Postives = 222/449 (49.44%), Query Frame = 1 
Query:   67 QCGGSGCSDIEGTEGDDCCIGDITQAGLTCGVDGVVAPCLLDESITATMSPSIAPAAASTAQPSAPTPAGTVQPPTGQXXXXXXXXXXXXXXXXAQVAVAVTTAPLQTAAT------------LDPTPAATTIVPATXXXXXXXXXXXXXXXXXXXXXXXXTE---------------------------------ASSTCDNGYPGWQTQEACCTEFCGQCGGSGCGALGSADCCVDNVMAAQLVCGIDTLEAPCIV-----PVLGDGETYAPYAAPTPPXXXXXXA---------------------------------ATAAPIGADATSQPSGSRGVDGATEEPTPSATGNDTDATGTPAAPTSAPVRTXXXXXXXXXTTPECTEGVEGFAHDVVCCPTACGQCGGSGCENIVGTAGASDCCSDAILISGEMCSDNGGVAPCILG 1164
             CGGSGCSD++GT G +CC+  I  + +TCGVD  VAPC++D  I  T      P+AA  A P+              XXXXXXXXXXXXXXXX       TTAP  TA                PTP A       XXXXXXXXXXXXXXXXXXXXXXXX                                   A+S C+NGY GWQ  EACC+EFCGQCGGSGCG LGSA CC DN++ A  VCG+D LEAPCI+       L +GET AP  APT  XXXXXX                                  AT +P+       P+ S G    +E P  S         G     T AP            +TPEC +G+EGF H V CC  +CGQCGG+GCE + G  GA +CCS  +L +   CS+ G  APC+LG
Sbjct:    1 MCGGSGCSDVDGTRGSECCVDHILDSDVTCGVDDGVAPCIVDPDIITT------PSAAEAATPA-------------XXXXXXXXXXXXXXXXXXXTPSMTTTAPGPTATPSMTXXXXXXXXXXXPTPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCFDNIINAGKVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAETEXXXXXXXXATESPVSRGGVGTPTSSPG---GSEAPQESVAXXXXXPVGGGVGTTPAP------------STPECADGIEGFRHGVACCSVSCGQCGGTGCEYLEG--GALECCSHDVLTTNSSCSETG-EAPCVLG 412
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.920e-7
Identity = 106/256 (41.41%), Postives = 127/256 (49.61%), Query Frame = 1 
Query:    1 CMDGLEGVLADDGVTCCLAACGQCGGSGCSDIEGTEG-DDCCIGDITQAGLTCGVDGVVAPCLLDESITATMSPSIAPAAASTAQPSAPTPAGTVQPPTGQXXXXXXXXXXXXXXXXAQVAVAVTTAPLQTAATLDPTPAATTIVPATXXXXXXXXXXXXXXXXXXXXXXXXTEASSTCDNGYPGWQTQEACCTEFCGQCGGSGC----GALGSADCCVDNVMAAQLVCGIDTLEAPCIVPVLGDGETYAPYAAPT 753
            C +G+ G+ +  GV+CCLA CG+CGGS C +  G  G D+CC  DI + G  C +  + APC++D S                    AP P+    P    XXXXXXXXXXXXXXXX                               XXXXXXXXXXXXXXXXXXXXXXXX   +  C NG PG Q+  ACC   CG CGGS C    G LG   CC   +     +C   T+ APC+V   G     +P A PT
Sbjct: 1479 CSNGIPGIQS--GVSCCLADCGECGGSDCDEFGGGLGADNCCESDIEEYGELCSIK-LEAPCVVDAS--------------------APAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXX--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVCSNGIPGIQSGNACCLAECGACGGSDCAEFGGGLGEDYCCQSEIEDFGELCSA-TMAAPCVVD--GSAPAPSPVAMPT 1682
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.830e-7
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 CMDGLEGVLADDGVTCCLAACGQCGGSGCSDIEGTEGD-DCCIGDITQAGLTCGVDGVVAPCLLDESITATMSPSIAPAAASTAQPSAP 264
            C +G+ GV +  GV+CCLA CG CGGSGC+++ G  G+ +CC G+I + G  C +  + APC++D S         APA +  A+P AP
Sbjct:   35 CSNGIPGVQS--GVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIK-LEAPCVVDAS---------APAPSPVAEPVAP 111
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 7.810e-7
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:  964 TTPECTEGVEGF--AHDVVCCPTACGQCGGSGCENIVGTAGASD--CCSDAILISGEMCSDNGGVAPCIL 1161
            TT  C+ G+EG   A+  VCCPTACG CGG  C      AG  D  CC   I++SG  CS+N  +APCI+
Sbjct:   48 TTQTCSNGIEGIESANGDVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGDIIVSGASCSENQ-MAPCII 116
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: D8LSQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-6
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    4 MDGLEGVLADDGVTCCLAACGQCGGSGCSDIEGTEGDDCCIGDITQAGLTCGVDGVVAPCLLD 192
            M+G+EG+  ++GV CC A CGQCGG GC  + G +  +CCI  +      C V G  APC++D
Sbjct:   48 MNGIEGIN-ENGVVCCTAECGQCGGEGCGSVPGLDNTNCCINGVLNNQELCSVAGA-APCVID 108
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: A0A6H5JII7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.840e-6
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 CMDGLEGVLADDGVTCCLAACGQCGGSGCSDIEGTEGD-DCCIGDITQAGLTCGVDGVVAPCLLD 192
            C +G+ GV +  GV+CCLA CG CGGSGC+++ G  G+ +CC G+I + G  C +  + APC++D
Sbjct:  465 CSNGIPGVQS--GVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIK-LEAPCVID 526
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.330e-6
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:  976 CTEGVEGF-AHDVVCCPTACGQCGGSGCENIVGTAG--ASDCCSDAILISGEMCSDNGGVAPCILG 1164
            C+ G+EG  A+ VVCCP ACGQCGG+GC       G   S CC   +  S E C D    APCI+G
Sbjct:  193 CSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYC-DETNEAPCIIG 257
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.760e-5
Identity = 33/69 (47.83%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  967 TPECTEGVEGFAHD-VVCCPTACGQCGGSGCENIVGTAGASD---CCSDAILISGEMCSDNGGVAPCIL 1161
            T  C+ G+EG  H   VCCP ACGQCGGSGC +  G+A   D   CCS  +L     C D    APCI+
Sbjct:  680 TQTCSNGIEGIDHKGEVCCPLACGQCGGSGCGS-AGSANGLDGASCCSSEVLAGNVYCEDTN-AAPCII 746
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 6.020e-5
Identity = 33/69 (47.83%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:  967 TPECTEGVEGF-AHDVVCCPTACGQCGGSGCENIVGTAGAS--DCCSDAILISGEMCSDNGGVAPCILG 1164
            T  C+ G+EG   + VVCCP ACGQCGG GC       G S   CC   I  S E C D    APCI+G
Sbjct:  445 TETCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYC-DETNEAPCIIG 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12214.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JJ70_9PHAE4.820e-6446.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8G7_ECTSI1.340e-4542.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ68_ECTSI1.920e-741.41WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ69_ECTSI2.830e-742.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ60_ECTSI7.810e-748.57WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSQ5_ECTSI1.230e-644.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JII7_9PHAE3.840e-646.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC43_9PHAE9.330e-648.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI1.760e-547.83Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D7FIC5_ECTSI6.020e-547.83Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12214contigH-canaliculatus_F_contig12214:571..3577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue8.3e-08
Seed eggNOG ortholog2880.D7FQV4
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002960.1
Exons5
Model size1164
Cds size1161
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12214.1902.1prot_H-canaliculatus_F_contig12214.1902.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12214 571..3574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.8829525-CDS-H-canaliculatus_F_contig12214:570..7611622928935.8829525-CDS-H-canaliculatus_F_contig12214:570..761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 571..761 -
1696845619.447443-CDS-H-canaliculatus_F_contig12214:570..7611696845619.447443-CDS-H-canaliculatus_F_contig12214:570..761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 571..761 -
1622928935.9004462-CDS-H-canaliculatus_F_contig12214:992..13671622928935.9004462-CDS-H-canaliculatus_F_contig12214:992..1367Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 993..1367 -
1696845619.4615207-CDS-H-canaliculatus_F_contig12214:992..13671696845619.4615207-CDS-H-canaliculatus_F_contig12214:992..1367Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 993..1367 -
1622928935.9156187-CDS-H-canaliculatus_F_contig12214:2130..22081622928935.9156187-CDS-H-canaliculatus_F_contig12214:2130..2208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 2131..2208 -
1696845619.4707866-CDS-H-canaliculatus_F_contig12214:2130..22081696845619.4707866-CDS-H-canaliculatus_F_contig12214:2130..2208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 2131..2208 -
1622928935.932414-CDS-H-canaliculatus_F_contig12214:2684..30981622928935.932414-CDS-H-canaliculatus_F_contig12214:2684..3098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 2685..3098 -
1696845619.482857-CDS-H-canaliculatus_F_contig12214:2684..30981696845619.482857-CDS-H-canaliculatus_F_contig12214:2684..3098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 2685..3098 -
1622928935.9490817-CDS-H-canaliculatus_F_contig12214:3471..35741622928935.9490817-CDS-H-canaliculatus_F_contig12214:3471..3574Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 3472..3574 -
1696845619.491242-CDS-H-canaliculatus_F_contig12214:3471..35741696845619.491242-CDS-H-canaliculatus_F_contig12214:3471..3574Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12214 3472..3574 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.9671602-UTR-H-canaliculatus_F_contig12214:3574..35771622928935.9671602-UTR-H-canaliculatus_F_contig12214:3574..3577Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12214 3575..3577 -
1696845619.4996207-UTR-H-canaliculatus_F_contig12214:3574..35771696845619.4996207-UTR-H-canaliculatus_F_contig12214:3574..3577Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12214 3575..3577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12214.1902.1

>prot_H-canaliculatus_F_contig12214.1902.1 ID=prot_H-canaliculatus_F_contig12214.1902.1|Name=mRNA_H-canaliculatus_F_contig12214.1902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=387bp
MDGLEGVLADDGVTCCLAACGQCGGSGCSDIEGTEGDDCCIGDITQAGLT
CGVDGVVAPCLLDESITATMSPSIAPAAASTAQPSAPTPAGTVQPPTGQP
TPPSATNRPVAAPTPAQVAVAVTTAPLQTAATLDPTPAATTIVPATPLPT
AVAVPTAAPVVDTETTVAPVTEASSTCDNGYPGWQTQEACCTEFCGQCGG
SGCGALGSADCCVDNVMAAQLVCGIDTLEAPCIVPVLGDGETYAPYAAPT
PPPSPAPGAATAAPIGADATSQPSGSRGVDGATEEPTPSATGNDTDATGT
PAAPTSAPVRTSSPLGTPAPTTPECTEGVEGFAHDVVCCPTACGQCGGSG
CENIVGTAGASDCCSDAILISGEMCSDNGGVAPCILG
back to top

mRNA from alignment at H-canaliculatus_F_contig12214:571..3577-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12214.1902.1 ID=mRNA_H-canaliculatus_F_contig12214.1902.1|Name=mRNA_H-canaliculatus_F_contig12214.1902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3007bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12214:571..3577- (Hapterophycus canaliculatus Oshoro5f female)
TGCATGGATGGGCTTGAGGGAGTCCTGGCTGACGATGGGGTGACGTGCTG
CCTGGCGGCGTGCGGGCAGTGCGGTGGGTCGGGCTGCTCGGACATCGAGG
GCACAGGTGAGGCAGGGCACACGCACCACGCCGGTGCCGGGTGACCCGCT
GATGTCGGTGCCTCTCAATTCTCCATGTACACTTTCGCCTGTATGAAGTT
TGATGGAGTCTTGTCCCTTCTCAACACGTTTTCGAAGTGTCAAGTTGTGA
TCTCTTGGACGTCTCATTCCGTACACTTGTATCATGGCCACAGTTTAATG
TCTTGGTTTTCTAGTGCGAGCGGCCTGCGAACGTGAGCGTCTGCTGGATA
GAGGGGACGCGTGCAAGCTCTGATTCGTGCGGACCTCGTGGCACGCGGGT
AGGCAGGAAGTCCTCCCTCCCTCCCTCTCTCCCTTAACGCAATGCGCGAT
TACCGCCGCAACCAAAACGAACGAAACAGAGGGTGACGATTGCTGCATCG
GCGACATCACCCAAGCCGGTCTCACCTGCGGAGTGGACGGCGTCGTAGCT
CCCTGCCTGCTGGACGAATCCATCACCGCCACGATGTCGCCCTCGATAGC
ACCGGCGGCCGCCAGCACTGCTCAGCCCTCCGCACCGACACCAGCCGGCA
CCGTCCAGCCCCCGACGGGGCAACCAACCCCGCCGAGCGCGACAAACAGG
CCAGTCGCCGCACCGACGCCGGCGCAGGTTGCCGTTGCTGTGACCACCGC
GCCCTTGCAGACGGCGGCGACGCTTGATCCGACGCCGGCCGCGACGACGA
TAGTTCCGGCAACCCCGTTGCCGACCGCCGTGGCCGTGCCGACTGCTGCG
CCCGTGGTGGACACGGAGACCACGGTAGCCCCAGTCACGGAGGGTGAGTT
TTTGCGAGGAAGCCGTGTTGGTTGTCGGCCGCGGTCTGGTTGGGGACGGG
CTAGGGCCGCGGTCCGCGTTTGAGTGCTCTTGCCGAGGGGGAACACCGCC
GTGCGGGTAGTTGCTTGCCGTTTGGTCTTCGCGGGCGGTCGATGCAGTGT
CTATTCATGCCATGCCATCTTGATTGGGCCTCTAGACCCTGATCCATTCG
GCACTGATCCACCGCCGCCGCCGCCGTTGCCCTTGAAGCGGCTGCCCTTG
AAGCGGTTGCTATATTTTTATTCTTTAGTTGTCTGGAGCAGCACGAACAG
AACGCGCACAAGTAAAATCGATATGTACTGTTTATGGTTTCCCCCCCCCT
TTGGACTTATCTCTTGCGCTGTCCTCCCATACGTCAGGCCCCAAGCCACA
ATACGAGTTTTGTGTGTGTCCTGATCAATGTCACCTGGCGTTATTCGCGT
GTTGTAACCTACCGCACAGCATCGTCGACGTGCGACAACGGCTACCCCGG
GTGGCAAACCCAGGAAGCGTGCTGCACGGAGTTCTGCGGGCAGTGCGGTG
GGTGTTTCTTTCACCCAAGAAGGGCCGCCGTCCTTTGTCAACGTCTTTGC
TTGTGATACTGCCGTTGCAGTTACTGTTGCAGTTGCTGTTGCTGTCTCCT
GTCCCTCGACGAGTGTGCACGCGTTCATGTAGCTCATGGGGGGGTGGACG
AACGCTCACCTCCTTCCTTCCTGTAGACGGAACAGGCGACCGAAACGTCG
CTTTGCGTACCTGCACGATGCTCGCACCGCGCACCAGGTGGCAGTTTCGG
CGGGAGTTCAACCTCCGTCTTTTTCTTACCCCGAACGCAGTGGGTGCCTG
TTTGCACCAAGAGCACGACTGTTTTCATGCGGAACTGTGCGATAGACACT
CATGTACTCTGTCCTCTTCCGTCGGTTCCTCTAGTTTATTTTTCCTCGGC
GACGCGATTACGGGGGGGTTGGCGTTCGGCGCAAACTGATGGTGGGGGTC
TGCGTGGCTCGGGAAACACGGGGGGCGAACCCGTGTCGGTGGGACCAGTG
CTTGTTTTTCTTTTTGCAGAAGGCGCCGTTCGAATCGGGTGGTGTGGGCC
CCTGCTTTCGTCGATGTTGCGTTTGGCACTGCAGGTCGTCGGCCGGTGCG
TGAAAATAACGAGACGCCTTCTTTTTTTTTGTACGCTGTAGATGATACAG
TACCACCTTTCTTCACCGCACTCGGCTTCAACCGTTTCAAGAAACGCCTC
GCTGTCTGCGCGCACGCGCTATACGCACGCACCATCGCTCTCCCGCCGCC
GCGCGCACAGGGGGATCGGGTTGCGGGGCTCTTGGCTCAGCCGACTGCTG
CGTCGACAACGTCATGGCCGCGCAGCTGGTCTGCGGGATAGACACCTTGG
AGGCCCCCTGCATCGTCCCCGTTCTGGGGGACGGGGAGACGTACGCGCCG
TACGCGGCCCCGACGCCCCCACCCTCCCCCGCCCCCGGGGCGGCGACGGC
AGCTCCCATTGGTGCCGACGCCACCTCCCAGCCGTCGGGGTCCCGCGGGG
TGGACGGGGCGACGGAGGAACCAACTCCTTCCGCTACTGGGAACGATACC
GATGCTACGGGGACGCCGGCGGCGCCGACCTCTGCCCCGGTGAGGACGTC
GTCTCCGTTGGGGACGCCGGCTCCTACCACTCCAGGTGGGTTTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCCACGATCGCGACTATCCCTCTCGTGTCGATCGGAGAATCGACCCCTCG
AACTTTCGTGGTTCTTGCTTTCGAGTACTCGTCTGCCTTCCTGCCTGCCC
GTCGGCCTGCCTGCCTGTCTGACCCCTACGCGTGCTTGCCTACCTACCGC
GCACACGGTCCCGCAGAGTGCACCGAAGGCGTCGAGGGCTTCGCGCACGA
CGTCGTGTGCTGCCCGACCGCCTGCGGGCAGTGCGGGGGCTCGGGCTGCG
AGAACATCGTGGGGACGGCCGGTGCATCCGACTGCTGCTCGGACGCCATC
CTCATCTCGGGCGAGATGTGCAGCGACAACGGGGGAGTGGCACCGTGCAT
CCTCGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12214:571..3577-

>mRNA_H-canaliculatus_F_contig12214.1902.1 ID=mRNA_H-canaliculatus_F_contig12214.1902.1|Name=mRNA_H-canaliculatus_F_contig12214.1902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2322bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12214:571..3577- (Hapterophycus canaliculatus Oshoro5f female)
ATGGATGGGCTTGAGGGAGTCCTGGCTGACGATGGGGTGACGTGCTGCCT
GGCGGCGTGCGGGCAGTGCGGTGGGTCGGGCTGCTCGGACATCGAGGGCA
CAGATGGATGGGCTTGAGGGAGTCCTGGCTGACGATGGGGTGACGTGCTG
CCTGGCGGCGTGCGGGCAGTGCGGTGGGTCGGGCTGCTCGGACATCGAGG
GCACAGAGGGTGACGATTGCTGCATCGGCGACATCACCCAAGCCGGTCTC
ACCTGCGGAGTGGACGGCGTCGTAGCTCCCTGCCTGCTGGACGAATCCAT
CACCGCCACGATGTCGCCCTCGATAGCACCGGCGGCCGCCAGCACTGCTC
AGCCCTCCGCACCGACACCAGCCGGCACCGTCCAGCCCCCGACGGGGCAA
CCAACCCCGCCGAGCGCGACAAACAGGCCAGTCGCCGCACCGACGCCGGC
GCAGGTTGCCGTTGCTGTGACCACCGCGCCCTTGCAGACGGCGGCGACGC
TTGATCCGACGCCGGCCGCGACGACGATAGTTCCGGCAACCCCGTTGCCG
ACCGCCGTGGCCGTGCCGACTGCTGCGCCCGTGGTGGACACGGAGACCAC
GGTAGCCCCAGTCACGGAGGAGGGTGACGATTGCTGCATCGGCGACATCA
CCCAAGCCGGTCTCACCTGCGGAGTGGACGGCGTCGTAGCTCCCTGCCTG
CTGGACGAATCCATCACCGCCACGATGTCGCCCTCGATAGCACCGGCGGC
CGCCAGCACTGCTCAGCCCTCCGCACCGACACCAGCCGGCACCGTCCAGC
CCCCGACGGGGCAACCAACCCCGCCGAGCGCGACAAACAGGCCAGTCGCC
GCACCGACGCCGGCGCAGGTTGCCGTTGCTGTGACCACCGCGCCCTTGCA
GACGGCGGCGACGCTTGATCCGACGCCGGCCGCGACGACGATAGTTCCGG
CAACCCCGTTGCCGACCGCCGTGGCCGTGCCGACTGCTGCGCCCGTGGTG
GACACGGAGACCACGGTAGCCCCAGTCACGGAGGCATCGTCGACGTGCGA
CAACGGCTACCCCGGGTGGCAAACCCAGGAAGCGTGCTGCACGGAGTTCT
GCGGGCAGTGCGCATCGTCGACGTGCGACAACGGCTACCCCGGGTGGCAA
ACCCAGGAAGCGTGCTGCACGGAGTTCTGCGGGCAGTGCGGGGGATCGGG
TTGCGGGGCTCTTGGCTCAGCCGACTGCTGCGTCGACAACGTCATGGCCG
CGCAGCTGGTCTGCGGGATAGACACCTTGGAGGCCCCCTGCATCGTCCCC
GTTCTGGGGGACGGGGAGACGTACGCGCCGTACGCGGCCCCGACGCCCCC
ACCCTCCCCCGCCCCCGGGGCGGCGACGGCAGCTCCCATTGGTGCCGACG
CCACCTCCCAGCCGTCGGGGTCCCGCGGGGTGGACGGGGCGACGGAGGAA
CCAACTCCTTCCGCTACTGGGAACGATACCGATGCTACGGGGACGCCGGC
GGCGCCGACCTCTGCCCCGGTGAGGACGTCGTCTCCGTTGGGGACGCCGG
CTCCTACCACTCCAGGGGGATCGGGTTGCGGGGCTCTTGGCTCAGCCGAC
TGCTGCGTCGACAACGTCATGGCCGCGCAGCTGGTCTGCGGGATAGACAC
CTTGGAGGCCCCCTGCATCGTCCCCGTTCTGGGGGACGGGGAGACGTACG
CGCCGTACGCGGCCCCGACGCCCCCACCCTCCCCCGCCCCCGGGGCGGCG
ACGGCAGCTCCCATTGGTGCCGACGCCACCTCCCAGCCGTCGGGGTCCCG
CGGGGTGGACGGGGCGACGGAGGAACCAACTCCTTCCGCTACTGGGAACG
ATACCGATGCTACGGGGACGCCGGCGGCGCCGACCTCTGCCCCGGTGAGG
ACGTCGTCTCCGTTGGGGACGCCGGCTCCTACCACTCCAGAGTGCACCGA
AGGCGTCGAGGGCTTCGCGCACGACGTCGTGTGCTGCCCGACCGCCTGCG
GGCAGTGCGGGGGCTCGGGCTGCGAGAACATCGTGGGGACGGCCGGTGCA
TCCGACTGCTGCTCGGACGCCATCCTCATCTCGGGCGAGATGTGCAGCGA
CAACGGGGGAGTGGCACCGTGCATCCTCGGCAGTGCACCGAAGGCGTCGA
GGGCTTCGCGCACGACGTCGTGTGCTGCCCGACCGCCTGCGGGCAGTGCG
GGGGCTCGGGCTGCGAGAACATCGTGGGGACGGCCGGTGCATCCGACTGC
TGCTCGGACGCCATCCTCATCTCGGGCGAGATGTGCAGCGACAACGGGGG
AGTGGCACCGTGCATCCTCGGC
back to top