mRNA_H-canaliculatus_F_contig12212.1901.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12212.1901.1
Unique NamemRNA_H-canaliculatus_F_contig12212.1901.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: D7FUP8_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP8_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.910e-28
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 RVGLQKDELAVAKQGATRLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGSNQLTR 198
            RV L+++ELAVAKQGATRLGSLV+TK+G VGTVRFCG T+FATGLWLGLELD PEGKNDGSNQL R
Sbjct:  624 RVSLRREELAVAKQGATRLGSLVKTKSGQVGTVRFCGLTEFATGLWLGLELDFPEGKNDGSNQLKR 689
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: A0A6H5JJQ7_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.910e-28
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 RVGLQKDELAVAKQGATRLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGSNQLTR 198
            RV L+++ELAVAKQGATRLGSLV+T++G VGTVRFCG T+FATGLWLGLELD PEGKNDGSNQL R
Sbjct:  789 RVSLRREELAVAKQGATRLGSLVKTRSGQVGTVRFCGLTEFATGLWLGLELDSPEGKNDGSNQLKR 854
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: A0A158R9Z7_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A158R9Z7_TAEAS)

HSP 1 Score: 72.4 bits (176), Expect = 3.650e-13
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    4 VGLQKDELAVAKQGATRLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGSNQLTRCAEREV 216
            VG     +     GA ++G  VQ     VGTVRF G TDFA G W+G+ELDEP GKNDG+    R AER+V
Sbjct:   60 VGPMSSPIPEGSTGALQMGDRVQVSGSRVGTVRFIGPTDFAAGEWVGIELDEPLGKNDGTVMGRRLAERQV 130
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: A0A663FIK0_AQUCH (CAP-Gly domain containing linker protein 3 n=1 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=A0A663FIK0_AQUCH)

HSP 1 Score: 67.4 bits (163), Expect = 2.060e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   52 RLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGS 183
            +LG  VQ   G VGT+RFCG T FA+G W G+ELDEPEGKNDGS
Sbjct:  262 QLGDRVQVDGGKVGTLRFCGTTAFASGQWAGVELDEPEGKNDGS 305
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: A0A663FLD9_AQUCH (CAP-Gly domain containing linker protein 3 n=2 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=A0A663FLD9_AQUCH)

HSP 1 Score: 67.4 bits (163), Expect = 2.060e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   52 RLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGS 183
            +LG  VQ   G VGT+RFCG T FA+G W G+ELDEPEGKNDGS
Sbjct:  262 QLGDRVQVDGGKVGTLRFCGTTAFASGQWAGVELDEPEGKNDGS 305
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: A0A8C6UBP8_9GOBI (CAP-GLY domain containing linker protein 3 n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UBP8_9GOBI)

HSP 1 Score: 67.4 bits (163), Expect = 2.070e-11
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   52 RLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGS 183
            +LG  VQ     VGT+RFCG T+FA+GLW+G+ELDEPEGKNDGS
Sbjct:  335 KLGDRVQLDNQKVGTLRFCGPTEFASGLWVGVELDEPEGKNDGS 378
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: UPI00195FF79F (CAP-Gly domain-containing linker protein 3-like n=1 Tax=Passer montanus TaxID=9160 RepID=UPI00195FF79F)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-11
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   52 RLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGS 183
            +LG  V+  +G VGT+RFCG T FA+G W G+ELDEPEGKNDGS
Sbjct:    8 QLGDRVRLDSGKVGTLRFCGTTAFASGQWAGVELDEPEGKNDGS 51
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: A0A6G1RB88_9GRUI (CAP-Gly domain containing linker protein family member 4 (Fragment) n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1RB88_9GRUI)

HSP 1 Score: 65.5 bits (158), Expect = 2.990e-11
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   52 RLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGS 183
            +LG  V+   G VGT+RFCG T FA+G W G+ELDEPEGKNDGS
Sbjct:  134 QLGDRVRIDGGKVGTLRFCGTTAFASGQWAGVELDEPEGKNDGS 177
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: A0A8C6V8X2_9GOBI (Si:dkeyp-47f9.4 n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6V8X2_9GOBI)

HSP 1 Score: 66.6 bits (161), Expect = 3.780e-11
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   52 RLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGS 183
            RLG  V      VGT+RFCG TDF+TGLW G+ELD+P+GKNDGS
Sbjct:  285 RLGDRVMIAGQKVGTLRFCGSTDFSTGLWAGVELDKPDGKNDGS 328
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BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Match: UPI00155E0E15 (CAP-Gly domain-containing linker protein 3-like n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155E0E15)

HSP 1 Score: 66.6 bits (161), Expect = 3.840e-11
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    4 VGLQKDELAVAKQGATRL------GSLVQTKAGHVGTVRFCGFTDFATGLWLGLELDEPEGKNDGS 183
            VG Q+D+LA   Q   RL            K    GT+RFCG T+FA+G W+G+ELDEPEGKNDGS
Sbjct:  233 VGAQRDQLAAETQRGRRLRRDQSGDDSPAAKLQQPGTLRFCGTTEFASGQWVGVELDEPEGKNDGS 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12212.1901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP8_ECTSI1.910e-2883.33CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JJQ7_9PHAE1.910e-2881.82CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A158R9Z7_TAEAS3.650e-1350.70Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
A0A663FIK0_AQUCH2.060e-1168.18CAP-Gly domain containing linker protein 3 n=1 Tax... [more]
A0A663FLD9_AQUCH2.060e-1168.18CAP-Gly domain containing linker protein 3 n=2 Tax... [more]
A0A8C6UBP8_9GOBI2.070e-1168.18CAP-GLY domain containing linker protein 3 n=2 Tax... [more]
UPI00195FF79F2.510e-1165.91CAP-Gly domain-containing linker protein 3-like n=... [more]
A0A6G1RB88_9GRUI2.990e-1165.91CAP-Gly domain containing linker protein family me... [more]
A0A8C6V8X2_9GOBI3.780e-1165.91Si:dkeyp-47f9.4 n=2 Tax=Neogobius melanostomus Tax... [more]
UPI00155E0E153.840e-1151.52CAP-Gly domain-containing linker protein 3-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12212contigH-canaliculatus_F_contig12212:977..1746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.9e-24
Seed eggNOG ortholog2880.D7FUP8
KEGG koko:K10758
EggNOG free text desc.microtubule binding
EggNOG OGsCOG5244@1,KOG4568@2759
EC1.8.3.2
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.810828-CDS-H-canaliculatus_F_contig12212:976..10991622928935.810828-CDS-H-canaliculatus_F_contig12212:976..1099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12212 977..1099 -
1696845619.4238439-CDS-H-canaliculatus_F_contig12212:976..10991696845619.4238439-CDS-H-canaliculatus_F_contig12212:976..1099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12212 977..1099 -
1622928935.8271837-CDS-H-canaliculatus_F_contig12212:1650..17461622928935.8271837-CDS-H-canaliculatus_F_contig12212:1650..1746Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12212 1651..1746 -
1696845619.4376006-CDS-H-canaliculatus_F_contig12212:1650..17461696845619.4376006-CDS-H-canaliculatus_F_contig12212:1650..1746Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12212 1651..1746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12212.1901.1prot_H-canaliculatus_F_contig12212.1901.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12212 977..1746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12212.1901.1

>prot_H-canaliculatus_F_contig12212.1901.1 ID=prot_H-canaliculatus_F_contig12212.1901.1|Name=mRNA_H-canaliculatus_F_contig12212.1901.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp
RVGLQKDELAVAKQGATRLGSLVQTKAGHVGTVRFCGFTDFATGLWLGLE
LDEPEGKNDGSNQLTRCAEREV*
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mRNA from alignment at H-canaliculatus_F_contig12212:977..1746-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12212.1901.1 ID=mRNA_H-canaliculatus_F_contig12212.1901.1|Name=mRNA_H-canaliculatus_F_contig12212.1901.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=770bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12212:977..1746- (Hapterophycus canaliculatus Oshoro5f female)
AGGGTGGGCCTGCAGAAGGACGAGCTGGCGGTGGCAAAGCAGGGGGCAAC
GCGGCTTGGATCCCTGGTGCAGACGAAGGCGGGCCACGTGGGCACGGTGA
GTTTTCCTCGCAGCCACGCACGTAGGATTTTTTTTTCTTCTGGCTGACGG
TTGCTGGGGTTGGTTTCGTGGTTGATATAATGGTATAGCGATGCACGCCG
AGTTCTTGGAATGCCCCCCCCCGTTTGCCCCCTCCCCCCCCCCCCTCCCC
TCCAAACAGCAGAGATTCTCATGGGTCGCGTTCCAGGTTGTCAACGATCC
CCTTCTAAGCAATCTACCGGTCCCCGGCAGAAAGCGGAGGTCGCACCACG
TGTGTTGAAGTTTGTTTTTGCAGAGCCGATCAGGCTGGCTACTAGGGGTA
ATGTCGAACTACTTTCCCGGGGCCGGCGCTTCGAATATGACGCAAGATCG
CTTGTTTCCTGCTTAGGAGTCCCGATGTGCGCGTAAACCACACACTCACG
CTGCCGCTCGCGGGTCTGATTTCAATCCACCTTGAATTTATTTTAGTCAT
CCTCGATCGTAGATGCACGTAGCGGGTCGGTGTCTTCAGCGCTTTCCTCC
TCCTCCCTCCTCTTTTTTTTTTTAATTTTGTTTTCCTGGCGTTTCAGGTA
AGGTTTTGCGGCTTCACGGACTTCGCCACGGGGCTGTGGCTCGGCCTGGA
GCTGGATGAACCCGAGGGGAAGAACGATGGATCCAACCAACTCACGAGGT
GTGCTGAGCGTGAGGTTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12212:977..1746-

>mRNA_H-canaliculatus_F_contig12212.1901.1 ID=mRNA_H-canaliculatus_F_contig12212.1901.1|Name=mRNA_H-canaliculatus_F_contig12212.1901.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12212:977..1746- (Hapterophycus canaliculatus Oshoro5f female)
AGGGTGGGCCTGCAGAAGGACGAGCTGGCGGTGGCAAAGCAGGGGGCAAC
GCGGCTTGGATCCCTGGTGCAGACGAAGGCGGGCCACGTGGGCACGAGGG
TGGGCCTGCAGAAGGACGAGCTGGCGGTGGCAAAGCAGGGGGCAACGCGG
CTTGGATCCCTGGTGCAGACGAAGGCGGGCCACGTGGGCACGGTAAGGTT
TTGCGGCTTCACGGACTTCGCCACGGGGCTGTGGCTCGGCCTGGAGCTGG
ATGAACCCGAGGGGAAGAACGATGGATCCAACCAACTCACGAGGTGTGCT
GAGCGTGAGGTTTGAGTAAGGTTTTGCGGCTTCACGGACTTCGCCACGGG
GCTGTGGCTCGGCCTGGAGCTGGATGAACCCGAGGGGAAGAACGATGGAT
CCAACCAACTCACGAGGTGTGCTGAGCGTGAGGTTTGA
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