mRNA_H-canaliculatus_F_contig12210.1900.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12210.1900.1
Unique NamemRNA_H-canaliculatus_F_contig12210.1900.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12210.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12210contigH-canaliculatus_F_contig12210:2085..2747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12210.1900.1prot_H-canaliculatus_F_contig12210.1900.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12210 2162..2557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.6804872-UTR-H-canaliculatus_F_contig12210:2084..21611622928935.6804872-UTR-H-canaliculatus_F_contig12210:2084..2161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12210 2085..2161 +
1696845619.3929396-UTR-H-canaliculatus_F_contig12210:2084..21611696845619.3929396-UTR-H-canaliculatus_F_contig12210:2084..2161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12210 2085..2161 +
1622928935.7145367-UTR-H-canaliculatus_F_contig12210:2557..27471622928935.7145367-UTR-H-canaliculatus_F_contig12210:2557..2747Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12210 2558..2747 +
1696845619.4137292-UTR-H-canaliculatus_F_contig12210:2557..27471696845619.4137292-UTR-H-canaliculatus_F_contig12210:2557..2747Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12210 2558..2747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.6950998-CDS-H-canaliculatus_F_contig12210:2161..25571622928935.6950998-CDS-H-canaliculatus_F_contig12210:2161..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12210 2162..2557 +
1696845619.4025893-CDS-H-canaliculatus_F_contig12210:2161..25571696845619.4025893-CDS-H-canaliculatus_F_contig12210:2161..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12210 2162..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12210.1900.1

>prot_H-canaliculatus_F_contig12210.1900.1 ID=prot_H-canaliculatus_F_contig12210.1900.1|Name=mRNA_H-canaliculatus_F_contig12210.1900.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
MYVLEGVVWAGERGEKYSKKFSITNDAALFLRYRSASCRQTRTPLNCIHD
GTFTTCSHGVISLPCLRPLTQSGAAPLHEVPEPNPYPRSKELPNVSLARW
LGGVSFNHHPPSFLEDSWPPSTRTPTYTYLL*
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mRNA from alignment at H-canaliculatus_F_contig12210:2085..2747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12210.1900.1 ID=mRNA_H-canaliculatus_F_contig12210.1900.1|Name=mRNA_H-canaliculatus_F_contig12210.1900.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=663bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12210:2085..2747+ (Hapterophycus canaliculatus Oshoro5f female)
ACACAGGAGATGCCCTGCGCGGATGGTGAACGATGCCTCATCCCTTAAAA
GACACTTGAATCCTCTGAGGCACTCGGATGTATGTGCTGGAGGGTGTGGT
GTGGGCGGGGGAAAGGGGAGAGAAATACAGTAAGAAATTTAGCATCACAA
ACGACGCTGCCCTGTTTTTGCGGTACCGAAGCGCTTCTTGCAGACAGACA
CGTACACCGCTGAACTGCATTCATGATGGCACGTTTACGACATGCTCGCA
CGGTGTGATCTCTCTTCCTTGCTTGAGGCCCCTCACGCAAAGCGGTGCCG
CACCGCTGCACGAGGTCCCAGAACCAAACCCATATCCTCGCTCAAAAGAA
CTCCCTAACGTCAGCCTGGCGCGCTGGCTTGGAGGCGTGAGCTTCAATCA
TCACCCTCCTAGCTTTCTTGAGGATAGCTGGCCTCCGTCAACACGCACCC
CGACGTATACTTATCTACTGTAGAGGGCCGAAGTGATGTGAAAGCTCTGT
GTAAGACGGCTGCATCTTCGCGTCGTTGTCCAGTCGCTTGCGAGGCGAAC
TTCTATCCCGACTGCACGGGATCTGCGGCGGCCAAGAAAGCAACAGCGAA
CTCCGACGCATCTGCGCGGAGTGCGCCTCCAAGAAACCCGCCGCCAAAGC
TGCCTCTAAAGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12210:2085..2747+

>mRNA_H-canaliculatus_F_contig12210.1900.1 ID=mRNA_H-canaliculatus_F_contig12210.1900.1|Name=mRNA_H-canaliculatus_F_contig12210.1900.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12210:2085..2747+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATGTGCTGGAGGGTGTGGTGTGGGCGGGGGAAAGGGGAGAGAAATA
CAGTAAGAAATTTAGCATCACAAACGACGCTGCCCTGTTTTTGCGGTACC
GAAGCGCTTCTTGCAGACAGACACGTACACCGCTGAACTGCATTCATGAT
GGCACGTTTACGACATGCTCGCACGGTGTGATCTCTCTTCCTTGCTTGAG
GCCCCTCACGCAAAGCGGTGCCGCACCGCTGCACGAGGTCCCAGAACCAA
ACCCATATCCTCGCTCAAAAGAACTCCCTAACGTCAGCCTGGCGCGCTGG
CTTGGAGGCGTGAGCTTCAATCATCACCCTCCTAGCTTTCTTGAGGATAG
CTGGCCTCCGTCAACACGCACCCCGACGTATACTTATCTACTGTAGATGT
ATGTGCTGGAGGGTGTGGTGTGGGCGGGGGAAAGGGGAGAGAAATACAGT
AAGAAATTTAGCATCACAAACGACGCTGCCCTGTTTTTGCGGTACCGAAG
CGCTTCTTGCAGACAGACACGTACACCGCTGAACTGCATTCATGATGGCA
CGTTTACGACATGCTCGCACGGTGTGATCTCTCTTCCTTGCTTGAGGCCC
CTCACGCAAAGCGGTGCCGCACCGCTGCACGAGGTCCCAGAACCAAACCC
ATATCCTCGCTCAAAAGAACTCCCTAACGTCAGCCTGGCGCGCTGGCTTG
GAGGCGTGAGCTTCAATCATCACCCTCCTAGCTTTCTTGAGGATAGCTGG
CCTCCGTCAACACGCACCCCGACGTATACTTATCTACTGTAG
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