mRNA_H-canaliculatus_F_contig1221.1898.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1221.1898.1
Unique NamemRNA_H-canaliculatus_F_contig1221.1898.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1221.1898.1 vs. uniprot
Match: A0A6H5KJY5_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.280e-26
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 3
Query: 1338 VPKRFLQDYVQPFPGLIPRSEFSFSFPAEEAPRILDTLGAVTEKELAQMQATALRMFDKFFGRGMEVVVHTTLDVLEDRLASRARRTKKSR 1610
            +P    QD+V+PFPG IP SEFSFSFP EEAPRIL+TL AV +K+LAQMQ TAL +FD +FG GM  ++HT LD+LEDRL  RARR  + R
Sbjct:   28 IPVFIHQDFVKPFPGQIPWSEFSFSFPPEEAPRILETLRAVPDKKLAQMQVTALEVFDTYFGPGMGNMLHTVLDILEDRLHFRARRRSRRR 118          
BLAST of mRNA_H-canaliculatus_F_contig1221.1898.1 vs. uniprot
Match: D7FXN9_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.920e-22
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 3
Query: 1356 QDYVQPFPGLIPRSEFSFSFPAEEAPRILDTLGAVTEKELAQMQATALRMFDKFFGRGMEVVVHTTLDVLEDRLASRARRTKKSR 1610
            QD+V+PFPG +P SEFSFSFP EEAPRIL+TL AV +K+LAQMQ TAL +FD +FG GM  ++HT LD+LEDRL  RARR ++ R
Sbjct:  477 QDFVKPFPGQVPWSEFSFSFPPEEAPRILETLRAVPDKKLAQMQVTALEVFDTYFGPGMGNMLHTVLDILEDRLHFRARRRRRRR 561          
BLAST of mRNA_H-canaliculatus_F_contig1221.1898.1 vs. uniprot
Match: D8LNT2_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT2_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.520e-19
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 3
Query: 1356 QDYVQPFPGLIPRSEFSFSFPAEEAPRILDTLGAVTEKELAQMQATALRMFDKFFGRGMEVVVHTTLDVLEDRLASRA 1589
            QD+V+PFPG IP S+FSFSFP EE PR+L TL AV ++ELAQMQATAL +FD +FG GM+ ++HT LD+LEDRL  R+
Sbjct:  510 QDFVKPFPGKIPWSDFSFSFPPEEVPRMLKTLRAVPDRELAQMQATALEVFDTYFGPGMDNMLHTVLDILEDRLYFRS 587          
BLAST of mRNA_H-canaliculatus_F_contig1221.1898.1 vs. uniprot
Match: A0A6H5JXY3_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.630e-14
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 3
Query: 1356 QDYVQPFPGLIPRSEFSFSFPAEEAPRILDTLGAVTEKELAQMQA-----------------------TALRMFDKFFGRGMEVVVHTTLDVLEDRLASRA 1589
            QD+V+PFPG I  SEFSF+FP EE PR+L TL AV +KELA+MQA                       TAL +FD +FG GM  ++HT LD+LEDRL  R+
Sbjct:  439 QDFVKPFPGKIRWSEFSFTFPPEEVPRMLKTLRAVPDKELARMQASGTTIMKGCXXXXKIVWVEREEATALEVFDTYFGLGMGNMLHTVLDILEDRLYFRS 539          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1221.1898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJY5_9PHAE4.280e-2663.74Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
D7FXN9_ECTSI1.920e-2265.88Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
D8LNT2_ECTSI1.520e-1965.38Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
A0A6H5JXY3_9PHAE8.630e-1449.50GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1221contigH-canaliculatus_F_contig1221:5103..9557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.7e-23
Seed eggNOG ortholog2880.D7FXN9
Preferred nameEXTL1
KEGG koko:K02366,ko:K02368,ko:K21988
KEGG TC1.A.17.4
KEGG ReactionR05935,R05936,R10138,R10139
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG ModuleM00059
GOsGO:0000003,GO:0000139,GO:0000271,GO:0000902,GO:0000904,GO:0001501,GO:0001503,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006044,GO:0006082,GO:0006790,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007369,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007492,GO:0007498,GO:0008150,GO:0008152,GO:0008194,GO:0008354,GO:0008375,GO:0008589,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010646,GO:0010647,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016192,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019899,GO:0019953,GO:0021537,GO:0021772,GO:0021988,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030111,GO:0030154,GO:0030166,GO:0030176,GO:0030177,GO:0030182,GO:0030201,GO:0030202,GO:0030203,GO:0030210,GO:0030900,GO:0030968,GO:0031090,GO:0031175,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033554,GO:0033692,GO:0034620,GO:0034637,GO:0034645,GO:0034976,GO:0035295,GO:0035966,GO:0035967,GO:0036465,GO:0036498,GO:0040011,GO:0042175,GO:0042221,GO:0042328,GO:0042330,GO:0042802,GO:0042803,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045880,GO:0046982,GO:0046983,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048513,GO:0048518,GO:0048522,GO:0048565,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048706,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050508,GO:0050509,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055123,GO:0060322,GO:0060465,GO:0060828,GO:0061564,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0072498,GO:0090092,GO:0090097,GO:0090098,GO:0090100,GO:0090263,GO:0097485,GO:0098588,GO:0098657,GO:0098791,GO:0098827,GO:0099003,GO:0099504,GO:0120036,GO:0120039,GO:1901071,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
EC2.4.1.224,2.4.1.225
COG Functional cat.S
CAZyGT47,GT64
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size3689
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1221.1898.1prot_H-canaliculatus_F_contig1221.1898.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1221 6356..7481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.5934098-UTR-H-canaliculatus_F_contig1221:5102..63551622928935.5934098-UTR-H-canaliculatus_F_contig1221:5102..6355Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 5103..6355 +
1696845619.352435-UTR-H-canaliculatus_F_contig1221:5102..63551696845619.352435-UTR-H-canaliculatus_F_contig1221:5102..6355Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 5103..6355 +
1622928935.6366127-UTR-H-canaliculatus_F_contig1221:7481..95571622928935.6366127-UTR-H-canaliculatus_F_contig1221:7481..9557Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 7482..9557 +
1696845619.3841543-UTR-H-canaliculatus_F_contig1221:7481..95571696845619.3841543-UTR-H-canaliculatus_F_contig1221:7481..9557Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 7482..9557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.6082234-CDS-H-canaliculatus_F_contig1221:6355..65891622928935.6082234-CDS-H-canaliculatus_F_contig1221:6355..6589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 6356..6589 +
1696845619.3643034-CDS-H-canaliculatus_F_contig1221:6355..65891696845619.3643034-CDS-H-canaliculatus_F_contig1221:6355..6589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 6356..6589 +
1622928935.625542-CDS-H-canaliculatus_F_contig1221:7355..74811622928935.625542-CDS-H-canaliculatus_F_contig1221:7355..7481Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 7356..7481 +
1696845619.3745153-CDS-H-canaliculatus_F_contig1221:7355..74811696845619.3745153-CDS-H-canaliculatus_F_contig1221:7355..7481Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 7356..7481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1221.1898.1

>prot_H-canaliculatus_F_contig1221.1898.1 ID=prot_H-canaliculatus_F_contig1221.1898.1|Name=mRNA_H-canaliculatus_F_contig1221.1898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MRSIELLHLERCVCEVEKIKTGPRPRLDVPKRFLQDYVQPFPGLIPRSEF
SFSFPAEEAPRILDTLGAVTEKELAQMQATALRMFDKFFGRGMEVVVHTT
LDVLEDRLASRARRTKKSR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1221:5103..9557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1221.1898.1 ID=mRNA_H-canaliculatus_F_contig1221.1898.1|Name=mRNA_H-canaliculatus_F_contig1221.1898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4455bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1221:5103..9557+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGCGAATTTCACTCTTCGCTAGTCTGATGGCGTGACGGCGGCAACCCG TGTGGACGAAATCACTTTCGACATGTTTTTGTTTTCTTCCCGTACTCTGT GCAGCGGATTGTCCGCTCTGTTCGCCCCGCCCGGCGCAACAAGTGTCCCA GTCATAGTGAAGGATCTCAGAAGTTTTTTTGCTTTCGTTCCCGCTCGGCA TGCCCCCTCCAATGAAAGTCCGACGGGGGTTTTGCCGCGGGCCAACCGTG TATACAGCTTCTGGTTTGAGTGCTTTCGTACTGTGTTCACCAAACGGAGG GAGTAATACAGGGGGAAGACGCTTTGAGACAATGACAAGGGGTCTGAGGT GGTTGAGTCTCTGTCGTTTAGGGTTCATTCCGCCAGCCGTGACAAGAAAA ACAAAGTCCCTGCATCTCTCACCCTACCGAGTCTCACGGTTCTCTCCCTC TGTTTGTGTTTTGATTCCGTCCAGCCGCGCCGAACCCTCACTGCATATAA CACAACAAAAGACTCCTGAGAAGCCTGTTGAGACGTAGCTCAGAAGCCAT GCCTTCCGTGTTGTTGTGTTTTGTTTCCAAAGCTGTCAAGACTCGACCAA GCTAAGCTGGCTTTGCTTGGTTTGATCCGTACAAGGCACAGCTCGCTCGC TACGCCAGGATCGAGCACGACAATCAAGCGAACGCACGACCCGAGCGAGG CAAAGCACAGGATGCCGACCCTTCTCCGACGCAAGCCACGTTTTGCGTCT TTCGCAGCCACCAACAGCACGATCAGATGAAAACTCACACACACACACGT TCGCACCGCCGCCGAATCGCCGTGCAGTTGCTGACCTGGAACAAGGCCCT GTGCGAGTCCTTGCGGCGAGATTACGACCAGGTCGGAACACCGCCTTCGC GCTGTTGCCGGCGGTGTGTTCTCCCGCCACGTACCGGCTCGGGGAGGCGC TGTCGGCCGGCGCCATCCCCGTTTTGGTCCATCAGGTGCTGCTGCTGCTT CTGCTGCTGCTTCTGGTACTCGCGCCGCTATTCTGTGACGCCAGCGCGAG GCGTTTTGGGCGACCGAGGGTAGCCTTTCGACCGAAGACACAACTTGCTG CGTGCTAGACTTGGGAAGGATGAATAGCCTATTTTTTCGTCGTTGAGAGG GGAAGAGAGAGCGGTTGTCGTTCCCGGCCCTATTTCTCGCCAGCAATTAC GGTGCACTGCCCAAGAGGCAAAAAAAGGAGACGTGCGTCTGAGCGTAGAA CGCATGCGCTCCATCGAGTTGCTCCATCTCGAAAGGTGCGTTTGTGAGGT CGAAAAAATAAAAACGGGACCCCGCCCCCGTCTAGATGTCCCAAAACGTT TTCTCCAGGACTACGTTCAACCATTCCCGGGACTGATTCCGAGGTCAGAG TTTTCTTTCTCGTTTCCGGCGGAGGAGGCCCCGCGAATTCTCGACACGCT CGGAGCGGTCACGGAGAAGGAGCTCGCGCAGATGCAGGTGCGTGCTCGAT GGCGGATGGTGCGCCGTCGTTGTGATCGTCGTCGCGAGGCACACCTGTAA ATAGCGCGACCCAGCATCAGATCACTTCGAGGTACTATACCCCACGCCTG ACGCTGTGAACCCCCTTGGAGGGCTCCACTCGGGGGACACGGTTGCGTGC ATCGATGTGAGATCATATGGAGGCTTGTTTTCTCAATTCGAATGCGTGCT GCGGCCGTTGTGACGGGTGTTCGGGACTCGAGGTGGGATGGAATGATGGT TGGGTGTTACCGGCGTCTGTCCTTTCTTCTGACGTCCGCGCCCCTGATGG TTGGCGGAACCTTTTCGATGGTTTCATTTGTGTACCTTTGGCAGCGTCTC CGAGCTCATGCCGTAATCTCGGACGGCGTGCAAGGGTGGAGTCATCTGAT CACTCTGTCCCCTCCTCCTCCTCCTCCTCCTCCTCTTTCTCTCCCCGCGG CCGTGACTACTCTCGAAGGCCTTGCTTCATCTGACGGCGACACTCGAAGC AGCTAGCCAGACACAGAGACTCGCTGGTCGAATAATCTTGGAAAGCCATA CACAAATCGTTCTTCGGATCATCCTCTTGGCCTCGACCCCCCCTCGCAAA CCACTAACACACTCTCGTATTTTCACCCAGCATTCCCCCTAAAACAACGG GCACCAGCGCCACCACCTCCACCATCACCGCGACCCCCACTACGAACAGC CCCGATGATCAACCCCTACCCCCATCTCGCCCACATTTTTGAACGGAACA TAGGCGACCGCCCTGAGGATGTTCGACAAGTTTTTCGGGCGCGGCATGGA GGTCGTGGTGCACACAACGCTCGACGTCTTGGAGGACCGGCTTGCTTCCC GCGCTAGAAGGACGAAAAAGTCGCGATGACGCTCGATCTGTTGGTCTTGC GTGCGTGCTGCATTTACGGTCGAGTTTCTGTTTTCTTGTTTTCTTGTTTT CTTGTTTTTCTTTTTCTGTTGCTTGTTGCTCGTCGGGGTGCGGGCGACAG GGGAGTAGGAGAACCAGAGCGCTTGAGAGAACGTTTTTCGGTAAACGTGA AGAAACGTAACGCTTGCTGCTCTGCATTGCGGGCGGACAGCGCCGATAAC GTGGCGCGTGCACCTTGCACGAGCGTGCCCGCGCTGTCCGATTCAAATCG CCCGCAGATCTCTAGACGGCTGGCACTCTGAGCGTTTCGACCAGACCAGG GAAAGGGGGCAGTGGCGATGGTGTGCCCATGTTAATGGCCTGTTGCCTCA TCGAGCTCGTCTCCTCTTGCGGCACCGAGGATATTCACAAGCGAGGCCGA TGTGCGTTTGCATGGAAGTGGTTCCGGCCGCCAACGTAAAGGAACTTCTG TTTGGCCGGGCGTTGCCGTCGGAAAGCCGACTCCTCTCCTGCTGGCGTGC CTCTACTGTTTCGTTGCGCCTCGTGTGCCGCACCGTAGCCAAAATACCAC GCCCGTCGATCGTTAGAGACTCTTTTGGATTTTGTACGATAAAAGGGGCG CATAGTGGAGGGGACGCATGAGCACCCCACGCATCTAACTGTAGCACTCC CCTGCAAGTGTCCGTGCGTAATTTTGTGAGAGATTTTGTACATTCGATTT GACTCGGCGGCAGCAAGAAGGCTAGCCGATCTTGGGAAGCAGGGGTGTGT TTGTGTGATGTCACACCCCCTTTGACCTCTTGCGGGTCAACGTCAAGTGT TGTAGAAGATATTATGATTTTTTTGTTGAAGTTGAGGGTGTTTTGGTTAT ACATGGCGTAGGTGCTTTGTATCATTCGACGCAAGAAGCGAGGGTCTTTC GAGCGGGCGTGGGCTTAACCAACGTCTCCGGAACCCGGTGTTTTGACGTC GCGAGACTCCCGATAGAAAAGTCCCACGGCGGGAATTTATCCGGAGTCTC CGCGGAATTGATCTCGAGAGGGGGGTAACTCTGCAAGAGGCATTATTACG CCTACGGTTTCGATCACCTGTACAAAAAGCGGAGGAAACGCGCCTCTCGG AGGTGGGGGTGTTCGTGATGTATTCTTATATTTTCGGCAGCCGGCACCTA CGAAATGCACTTCGGTTGGTCGATTGGTCGATGTTGGCATTACTTTCTGT TCGCGGCGTGAGGGTCCGCGCCAGCTTGTAGAGTTGCCCACAGGCGTAGA CGGGCGGCTTCAACGTCGCCGAGAAACACCGAGACGTACTGTTTCACCGA TGCTGTGCTAGTAATTGTTTTATCGGCAAGAGTTATTTTTCCACCTTTAG TTGGAAAAAAGCTGCGATTTACAGCCTCTTCCTCGCGAGACGAGAGGGAC GGTGCAAGTGCTGCGAGTGCCTTTCTGTGTGTGTGGTCGCCACTGTTGGT TTTCAGCGGCAAGTCCACAGGGACGACTTTAAGAGTTGCCTCGGAAAACC CGAATGTTCGCTGTACCCAGGTCGTTTTTGTTTTTAGATGTGGGAATAGA AGGATTTATTACGCGTGTTTGCGACGGCGATGCAGACGAAACATGGAACC GAGAACCATCCCGGGCTTTGTTGCAGGCTTGACGGGCGTGGTGGTGGATT TACGCAGGCCGGAAGCGCTCGGGGGTTGAGGTGAAGTGTAAGAAGGTGCT CATTGAACTGCAGCGGGACTATTTGTCGGGCAGCACGAGGACGGAGGTAG CGATTCAGACGCGAATGATGGGTGATTGGTCGCAAGCGAAGCGAGAATGA TTTATTTTCAAAAACAAAACTTGAGGCTGGGGTAGACACCGCGGATACGG AGCGGGCTCGATACATGAGTGAGTCGGAAGGTTGGGGGGTCGTTCAGATC ACCTCTCGTCCACTGAATCCGCGGAAACTCCCCCAGCTCCACAGGTCGCG CGCATGGAGGGAAAGTGCGAGCTAAGCTTGGGGCATTGGCCGTCGTTCGC TCGAGAAGGATCCCGCGCTACGCTTCGAAGACGGTGGAAAGGCACGCGCC AATGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1221:5103..9557+

>mRNA_H-canaliculatus_F_contig1221.1898.1 ID=mRNA_H-canaliculatus_F_contig1221.1898.1|Name=mRNA_H-canaliculatus_F_contig1221.1898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1221:5103..9557+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCTCCATCGAGTTGCTCCATCTCGAAAGGTGCGTTTGTGAGGTCGA
AAAAATAAAAACGGGACCCCGCCCCCGTCTAGATGTCCCAAAACGTTTTC
TCCAGGACTACGTTCAACCATTCCCGGGACTGATTCCGAGGTCAGAGTTT
TCTTTCTCGTTTCCGGCGGAGGAGGCCCCGCGAATTCTCGACACGCTCGG
AGCGGTCACGGAGAAGGAGCTCGCGCAGATGCAGATGCGCTCCATCGAGT
TGCTCCATCTCGAAAGGTGCGTTTGTGAGGTCGAAAAAATAAAAACGGGA
CCCCGCCCCCGTCTAGATGTCCCAAAACGTTTTCTCCAGGACTACGTTCA
ACCATTCCCGGGACTGATTCCGAGGTCAGAGTTTTCTTTCTCGTTTCCGG
CGGAGGAGGCCCCGCGAATTCTCGACACGCTCGGAGCGGTCACGGAGAAG
GAGCTCGCGCAGATGCAGGCGACCGCCCTGAGGATGTTCGACAAGTTTTT
CGGGCGCGGCATGGAGGTCGTGGTGCACACAACGCTCGACGTCTTGGAGG
ACCGGCTTGCTTCCCGCGCTAGAAGGACGAAAAAGTCGCGATGAGCGACC
GCCCTGAGGATGTTCGACAAGTTTTTCGGGCGCGGCATGGAGGTCGTGGT
GCACACAACGCTCGACGTCTTGGAGGACCGGCTTGCTTCCCGCGCTAGAA
GGACGAAAAAGTCGCGATGA
back to top