mRNA_H-canaliculatus_F_contig1221.1899.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1221.1899.1
Unique NamemRNA_H-canaliculatus_F_contig1221.1899.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1221.1899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1221contigH-canaliculatus_F_contig1221:15543..18065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size879
Cds size756
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1221.1899.1prot_H-canaliculatus_F_contig1221.1899.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1221 15543..17943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.4067514-CDS-H-canaliculatus_F_contig1221:15542..157611622928935.4067514-CDS-H-canaliculatus_F_contig1221:15542..15761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 15543..15761 -
1696845619.3042798-CDS-H-canaliculatus_F_contig1221:15542..157611696845619.3042798-CDS-H-canaliculatus_F_contig1221:15542..15761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 15543..15761 -
1622928935.426182-CDS-H-canaliculatus_F_contig1221:16404..166911622928935.426182-CDS-H-canaliculatus_F_contig1221:16404..16691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 16405..16691 -
1696845619.3125052-CDS-H-canaliculatus_F_contig1221:16404..166911696845619.3125052-CDS-H-canaliculatus_F_contig1221:16404..16691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 16405..16691 -
1622928935.4449894-CDS-H-canaliculatus_F_contig1221:16882..171151622928935.4449894-CDS-H-canaliculatus_F_contig1221:16882..17115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 16883..17115 -
1696845619.322442-CDS-H-canaliculatus_F_contig1221:16882..171151696845619.322442-CDS-H-canaliculatus_F_contig1221:16882..17115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 16883..17115 -
1622928935.4667428-CDS-H-canaliculatus_F_contig1221:17926..179431622928935.4667428-CDS-H-canaliculatus_F_contig1221:17926..17943Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 17927..17943 -
1696845619.3323486-CDS-H-canaliculatus_F_contig1221:17926..179431696845619.3323486-CDS-H-canaliculatus_F_contig1221:17926..17943Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1221 17927..17943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.5544755-UTR-H-canaliculatus_F_contig1221:17943..180651622928935.5544755-UTR-H-canaliculatus_F_contig1221:17943..18065Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 17944..18065 -
1696845619.3409555-UTR-H-canaliculatus_F_contig1221:17943..180651696845619.3409555-UTR-H-canaliculatus_F_contig1221:17943..18065Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1221 17944..18065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1221.1899.1

>prot_H-canaliculatus_F_contig1221.1899.1 ID=prot_H-canaliculatus_F_contig1221.1899.1|Name=mRNA_H-canaliculatus_F_contig1221.1899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=252bp
MRRWKRHCRTSRAYSCLETMRMRSPRPPSRPPPPPSTPTPTRCTKEAPIS
PTRRRHQWQQHPQHLQHHQRQNLATGPFLRKRRRGGRQKEEGGAEEEREA
SVITVADTDAAGEADGPIAAAAAVAVTKEVDIDTASTSRAEVCAPPPAAS
TTVPTERELSDVEAAVGEDTARVEASLEQRSEASADESNPFLEGSYDDAR
PAATAGTTTAAQAFKNDKADSALSRPAATTTAAAAAAAAAMTPSAAMTPS
AS
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mRNA from alignment at H-canaliculatus_F_contig1221:15543..18065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1221.1899.1 ID=mRNA_H-canaliculatus_F_contig1221.1899.1|Name=mRNA_H-canaliculatus_F_contig1221.1899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2523bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1221:15543..18065- (Hapterophycus canaliculatus Oshoro5f female)
GACAACGCCGGCTGTCGAGGAGGAGGACCATGCCCCCCCTCCGTCCGTCG
CCTCGGATGTTTCGAGCGAGACGGAGCTGGTTGGGGTCGAGTTTGTTGAG
GAAGAGGCCACTGTGAGGGTGGATGCGCCGGTGGAAGAGGTGAGGGGTGA
CGAGGTGGGTCGGTGTCGGGAATGTGAAATCGTCCTTTGTGCTTTTGAGA
GATTGGCGTGCGTATAGCGTGGAGACATGGCGGTAAGCACCGGGGGGAGA
TCAGGGGACAGGGGGGCTCACGAAGGTGTGTTCTTCTCGATTTCATGCAC
TCACGTCACGTCATGAACAAAAGTTGTCGCCAAGCTTCCGGACTGGATGC
GACTCGTGCTTTCCACCGTCTCGCCATGTCGTTTGTGTGCTATTTTCCTG
TGCGTGGCCCTTCCTTCCTTCCTTCCTTCCTTCCCGAGTCCTTCTCTTGT
TTGCGTCGACTGTTGATGCACTGCCGTATTGTTTACGGACACACCCGTCT
AGCTTCTATCTTCGAGCCTCGGTGTTTCTGCTCCTTCAAGGCTTCTAGCC
AAGGTTGCTGAACAAGGGCGGTTCGGTTCTGTCTGGAAAGTCTGGAAAGT
CTGAAACGTCTTTTTTCTCCTGTATCGCGTTTTTCTTTTCGTTCTTCGCT
TCCCTTTGCTGTGGTCCTGTTGGGTTTGTGCCGGTGCTTGTCGACGGATC
AGCTCTATTGCTTGCTCGCTGTTTCCTTGCAGCCACCAAGAGGGGTCATG
CCCCAAAAGCGAGCGCAATCGCTCTTCCAGGTCGAACCGAAATCGAGACC
TCGCGGCGTGGTAGTAGATAACCATGATCCCAACTTCAGGTCGAACCCCA
AATTGTCTTCGAATTGTCCTCGCCTGTAAATTTTGCGTCAGCACCTGACC
ACCATCTGCAACTTTCCTCTGTTTGCTTCCCTCTCTCCCATCGCTTTCAG
ACACTGCCGGACGAGTCGAGCCTATTCGTGTCTGGAAACGATGAGGATGA
GGTCGCCGCGGCCGCCATCGCGGCCACCACCACCCCCATCAACACCAACA
CCAACACGGTGCACGAAGGAGGCGCCGATCTCGCCCACCCGTCGGCGACA
CCAATGGCAGCAACACCCTCAACACCTTCAACACCACCAGAGGCAGAACT
TAGCGACGGGGCCGTTTCTTCGCAAGAGGAGACGTTGGAAGAAGGAAGGG
AGGCGGCGGTGGTGATGGCGATGCCAGTCACTGACGCCACAGCTTCGGCC
TTAGGCGACCCAGCGGAAGAACTCCCCGCCAGGGAAGCAGCGGCTTGTGA
GGGTGCTGGGGTCCTTTCGAGGGAGGAGGAAGAGGGACAGAAAGCAGAAG
AGGAAGAAGGAGAAAAAGATGGAGGAGGAGGAAGACAAAAGGAGGAAGGA
GGAGCAGAGGAAGAACGAGAAGCTTCCGTTATCACCGTCGCTGACACCGA
CGCGGCTGGTGAGGCGGACGGACCTATTGCGGCAGCAGCAGCAGTGGCGG
TGACGAAGGAGGTGGACATCGACACAGCGTCGACCTCAAGAGCAGAGGTC
TGCGCGCCCCCGCCGGCTGCGTCGACGACAGTTCCGACCGAGAGGGAACT
GTCCGATGTCGAAGCGGCGGTAGGAGAGGATACGGCTCGTGTGGAAGCCT
CCCTCGAACAGGTGAAAGGGGTTGGCTTCGGGATTGTGGGACGACAGAAC
TCAGGCTTGACGTCATCTTCGCACTGCGTCGGACGCGTTGATCGATCACC
TACGCTCGACCTTCCTTACTTCCTTCCTTTCCGCATGTTTTTTAACGTTT
TCGTTTTCGTTTTTGTGGATCGTCACAAGAGCGGCACGCCCAAAACTGAG
CAACAGCGACTGGAATCTTGCTTTGTCAATTCGTTTCGAAATGCGCCCTC
TTCCAACGAGTACGGCGTTTTCTTGTTTTTTACGTGTGCCTTTTCTGGTT
ATGCTTCCGTCGTGTTGGGGCCACACTAGCTGGACGCGCATGGCGTCCCA
CCAACAAAAAACGTACAGTAAATCGTAAATGGTGCGAGAGCGAGAACAAT
CGAGGTGTTGGTGAATAGTGACCTAGACCATACGCAGCTAACATTCGAAC
CCGTTCATAACTCTTTACCTCTCGTCACTTACAGCTTCGAAGTAATGCCA
TGTTGGGTGCAATGGTATCATAGCGTGCTGCGTCCAGGACAAACGCAGAT
CTCGAACCCTATCCCCATGTTCTCCTGCACTCTCATACCATACAAGTACC
GTCCCACGACACCCTGATGACTGACTTCCTCTTTCCTTCTGTTCCTCCGC
TCAGCGCTCGGAGGCGTCGGCAGACGAATCGAATCCGTTCCTTGAAGGTA
GCTACGACGATGCAAGACCTGCGGCTACCGCTGGTACCACCACTGCCGCA
CAGGCCTTCAAGAACGACAAGGCAGACAGCGCCCTCTCTCGCCCTGCAGC
CACGACGACAGCAGCAGCAGCGGCAGCGGCAGCGGCAATGACACCGTCGG
CAGCAATGACACCGTCAGCATCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1221:15543..18065-

>mRNA_H-canaliculatus_F_contig1221.1899.1 ID=mRNA_H-canaliculatus_F_contig1221.1899.1|Name=mRNA_H-canaliculatus_F_contig1221.1899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1512bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1221:15543..18065- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCCGGTGGAAGAGATGCGCCGGTGGAAGAGACACTGCCGGACGAGT
CGAGCCTATTCGTGTCTGGAAACGATGAGGATGAGGTCGCCGCGGCCGCC
ATCGCGGCCACCACCACCCCCATCAACACCAACACCAACACGGTGCACGA
AGGAGGCGCCGATCTCGCCCACCCGTCGGCGACACCAATGGCAGCAACAC
CCTCAACACCTTCAACACCACCAGAGGCAGAACTTAGCGACGGGGCCGTT
TCTTCGCAAGAGGAGACACACTGCCGGACGAGTCGAGCCTATTCGTGTCT
GGAAACGATGAGGATGAGGTCGCCGCGGCCGCCATCGCGGCCACCACCAC
CCCCATCAACACCAACACCAACACGGTGCACGAAGGAGGCGCCGATCTCG
CCCACCCGTCGGCGACACCAATGGCAGCAACACCCTCAACACCTTCAACA
CCACCAGAGGCAGAACTTAGCGACGGGGCCGTTTCTTCGCAAGAGGAGAC
GAGGAGGAAGACAAAAGGAGGAAGGAGGAGCAGAGGAAGAACGAGAAGCT
TCCGTTATCACCGTCGCTGACACCGACGCGGCTGGTGAGGCGGACGGACC
TATTGCGGCAGCAGCAGCAGTGGCGGTGACGAAGGAGGTGGACATCGACA
CAGCGTCGACCTCAAGAGCAGAGGTCTGCGCGCCCCCGCCGGCTGCGTCG
ACGACAGTTCCGACCGAGAGGGAACTGTCCGATGTCGAAGCGGCGGTAGG
AGAGGATACGGCTCGTGTGGAAGCCTCCCTCGAACAGGAGGAGGAAGACA
AAAGGAGGAAGGAGGAGCAGAGGAAGAACGAGAAGCTTCCGTTATCACCG
TCGCTGACACCGACGCGGCTGGTGAGGCGGACGGACCTATTGCGGCAGCA
GCAGCAGTGGCGGTGACGAAGGAGGTGGACATCGACACAGCGTCGACCTC
AAGAGCAGAGGTCTGCGCGCCCCCGCCGGCTGCGTCGACGACAGTTCCGA
CCGAGAGGGAACTGTCCGATGTCGAAGCGGCGGTAGGAGAGGATACGGCT
CGTGTGGAAGCCTCCCTCGAACAGCGCTCGGAGGCGTCGGCAGACGAATC
GAATCCGTTCCTTGAAGGTAGCTACGACGATGCAAGACCTGCGGCTACCG
CTGGTACCACCACTGCCGCACAGGCCTTCAAGAACGACAAGGCAGACAGC
GCCCTCTCTCGCCCTGCAGCCACGACGACAGCAGCAGCAGCGGCAGCGGC
AGCGGCAATGACACCGTCGGCAGCAATGACACCGTCAGCATCACGCTCGG
AGGCGTCGGCAGACGAATCGAATCCGTTCCTTGAAGGTAGCTACGACGAT
GCAAGACCTGCGGCTACCGCTGGTACCACCACTGCCGCACAGGCCTTCAA
GAACGACAAGGCAGACAGCGCCCTCTCTCGCCCTGCAGCCACGACGACAG
CAGCAGCAGCGGCAGCGGCAGCGGCAATGACACCGTCGGCAGCAATGACA
CCGTCAGCATCA
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