mRNA_H-canaliculatus_F_contig12208.1896.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12208.1896.1
Unique NamemRNA_H-canaliculatus_F_contig12208.1896.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12208.1896.1 vs. uniprot
Match: D7G0S1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S1_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 9.020e-5
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:   34 RIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARAKWIEA---TVEEAITVTTTVLLDRMLVNRHLNKELLWSLLGEIDEVDE--IKVKTL-AGPTADAVLALLRR 345
            R EVGEELRYP +MTS   GSVLS+G DG+LL A E R         TV EA      +       + H  K  +  +  +  + D   ++ KTL A   A A+ AL+RR
Sbjct:   17 RNEVGEELRYPPSMTSRMDGSVLSMGADGTLLHATEDRQNHFRLEMKTVVEAAEAAEDL-------DEHETKTAVPDITADSVDPDNERLQPKTLVAADPATAIAALMRR 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12208.1896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0S1_ECTSI9.020e-539.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12208contigH-canaliculatus_F_contig12208:1013..3450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size595
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12208.1896.1prot_H-canaliculatus_F_contig12208.1896.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12208 1013..3448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.1343386-CDS-H-canaliculatus_F_contig12208:1012..10541622928935.1343386-CDS-H-canaliculatus_F_contig12208:1012..1054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12208 1013..1054 +
1696845619.233099-CDS-H-canaliculatus_F_contig12208:1012..10541696845619.233099-CDS-H-canaliculatus_F_contig12208:1012..1054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12208 1013..1054 +
1622928935.149324-CDS-H-canaliculatus_F_contig12208:2240..26701622928935.149324-CDS-H-canaliculatus_F_contig12208:2240..2670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12208 2241..2670 +
1696845619.2430966-CDS-H-canaliculatus_F_contig12208:2240..26701696845619.2430966-CDS-H-canaliculatus_F_contig12208:2240..2670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12208 2241..2670 +
1622928935.1612804-CDS-H-canaliculatus_F_contig12208:3329..34481622928935.1612804-CDS-H-canaliculatus_F_contig12208:3329..3448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12208 3330..3448 +
1696845619.2526705-CDS-H-canaliculatus_F_contig12208:3329..34481696845619.2526705-CDS-H-canaliculatus_F_contig12208:3329..3448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12208 3330..3448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12208.1896.1

>prot_H-canaliculatus_F_contig12208.1896.1 ID=prot_H-canaliculatus_F_contig12208.1896.1|Name=mRNA_H-canaliculatus_F_contig12208.1896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
TSSQRRHQSPARIEVGEELRYPCTMTSIYGGSVLSLGMDGSLLIAPEARA
KWIEATVEEAITVTTTVLLDRMLVNRHLNKELLWSLLGEIDEVDEIKVKT
LAGPTADAVLALLRRKFSAMEGRDRERSTGVRATSSAAGAAVAALEAASA
SPSSQPHAGHPGTSTGRPSGVGESPPPPPSQEWGDDVVLRITTTGSL
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mRNA from alignment at H-canaliculatus_F_contig12208:1013..3450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12208.1896.1 ID=mRNA_H-canaliculatus_F_contig12208.1896.1|Name=mRNA_H-canaliculatus_F_contig12208.1896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12208:1013..3450+ (Hapterophycus canaliculatus Oshoro5f female)
ACGTCCAGCCAACGTCGACACCAAAGCCCCGCGAGGATCGAGGTAATGGA
TGGTTCGATGCCCTTCTTGAATATCCTTCTTGTCTGTCGATGGTGAGGTG
ATTCGTAGGGGCTCAGTTCTTCCTGCTGATGTCTTTGGCTGATCGGTTCA
CTCTTCCACTCCAGAAATGGTGCGTTCCCGACCTTTCTGGCGGTTGAAAA
ACGTCGCCACGAAGGCTGGAATACGCTGTTTTGGTTTACTTGTCGGGGTT
GTTACTGCTTGTGCTCGTGGGGCTGTTGTTCGCGTAGGTCCCGCCGTTTT
CATCGTGCTCCGTCCCAGCCCTTCAGCCTGCTTTCAATACCCTTTGCACT
CCTGTCATGTTCTCACACGTGCAAATCATCAGAGCAGAAACCAAATCAAG
ACGACGCGGGCAAAATGTTCCATTCGGGTTGATACACAGAGCGAACACCA
AAAATGCAAACGTAATCCGAGATGATACAACAAGCTGTGGAGTGGGCCTC
TTGCGCCACGAAGCGTTCGTTACCTCAGAAACAATCTGATGCCAACCCGA
GACCGAGACCGACGGGTACCACAGGTGTATCGCATTAGTCTGGCTGGAGC
AAGTGTTTTTCGTGGCGGTTGATATCACACGGATTCGAGCACTCATGGTG
GAGGGCGCATCCTTGTCAGGCACTCTATGCAGCAGACCTTGCCTCTGCGT
GCCAGCTAGTCAGATGAAGGCGAGACGCCTAGGAGGGAGGGTTTCTTTGT
CCACAAAAGGCGTGCATAAGATCGATCGATGCTGCGACCAAGCCGATTGT
CGGGGAAAGTACGAGAACAGCGAGACAGAAGGAGGAAGCACAGAGAGAGA
CGAGAAGCCACACACGAGGAGATGGTGGTATCGATCGAGCTTTCCTCCTT
GCATGCTTTCTTTGCGCCTCCACTTGTACCCATTGCTTGATTATGCTTGT
TCTTCGCTGTCCCATCCTATCCCCGCTATCTCGGTCCTCTTGACAGCACT
CGCGCCCTTGCTACAGGTGCTGCTCCCTGTAGCATCGTGCCATACACACA
CCTCTCGTGCCTGAAGGCGGACCATAGTCAGAGTTCACCATCCGTGTATC
GCGTGATAGCGCTCCAGATATGTACTTCTTGACTCTTTCCTAACTTCACC
AAGTAGCTTCCCAGCCCATGTCCTATTCACGCCATGTTGTATTTCCCCCC
AATCCATCGAACGCACACTCCGAGAAAGGTGGGCGAGGAACTTCGGTACC
CCTGCACCATGACCTCCATCTACGGAGGTTCGGTCCTCAGCCTCGGTATG
GACGGTAGCCTCCTCATCGCTCCCGAGGCGAGAGCCAAATGGATAGAGGC
AACGGTGGAAGAGGCGATCACCGTCACCACGACGGTGCTTCTGGACAGGA
TGCTGGTCAACCGACACCTGAACAAGGAGCTTCTGTGGTCCCTGCTCGGC
GAGATCGACGAGGTCGACGAGATAAAGGTCAAGACGCTTGCCGGTCCCAC
TGCAGACGCCGTACTCGCCCTCCTCCGAAGAAAGTTTTCGGCGATGGAGG
GGCGAGACAGAGAGCGGAGCACGGGCGTTCGGGCGACGAGCAGCGCGGCC
GGCGCCGCCGTCGCTGCCCTAGAGGCAGCTTCCGCCAGTCCGTCGTCGCA
ACCGCATGGTAAGGCTGTCCACCACTCACACCACACGTCATTTTGCTGCT
GCTGCTGCTGTTGCCGTTGTTGTTCTGTTCGAGAAGGGCATTGGTAGCCA
AGGCCTTCATTGGCTATCGTTCTTCCGTCCCTTGGTCGGCGTGGAAGGTA
GTTTTGATCTCGTGAGTGCGGCGACCAGGCGCGCTCAATCTTATCGTCAA
CGTGCGAGGTTGTGTTTATTGCCGGACTCACCCCTCAACCTCGGCACGGG
CAAGCTTTCCTTCGTTTTCCGTTCTCAATATCCGACAAGCCTCCGCAAAA
ACCATATGTTGCCTCTCTAAACCCTTTCATGTCAACTTGACTTTCAGCGA
GATGCGGACGCGAAATATAGCCTGCGTTTTGATGCTTCGTCTCTTCTAAC
AATGGCGAATGAAGTGTCTGAGTTTTCTCTTGCTAGAAGAACGGGTTGGC
TCGGACGGCTGTACGGGCTAGTCGCGTGGGTAAGTGGCCATACGCGTGCA
TGAACAGCAGCTTCGAACTTGCGTCTTGTCACCGGTAGCAGCACGTTGAT
GACTAAACAAGGTGGAACGGCAGAGCCGTCACTGTAAACGTGGAGGTCTA
CAGCAAATTTCATGTGATTGCATCTGCTCTACACGTCTCTTTGCCACTGC
GTGTTTTCCGTCGTCAGCGGGGCACCCGGGCACCAGCACCGGCCGCCCAT
CGGGCGTGGGAGAATCGCCGCCGCCGCCGCCGTCTCAGGAGTGGGGGGAC
GATGTGGTACTGCGTATCACAACCACCGGGAGTCTGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12208:1013..3450+

>mRNA_H-canaliculatus_F_contig12208.1896.1 ID=mRNA_H-canaliculatus_F_contig12208.1896.1|Name=mRNA_H-canaliculatus_F_contig12208.1896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12208:1013..3450+ (Hapterophycus canaliculatus Oshoro5f female)
ACGTCCAGCCAACGTCGACACCAAAGCCCCGCGAGGATCGAGACGTCCAG
CCAACGTCGACACCAAAGCCCCGCGAGGATCGAGGTGGGCGAGGAACTTC
GGTACCCCTGCACCATGACCTCCATCTACGGAGGTTCGGTCCTCAGCCTC
GGTATGGACGGTAGCCTCCTCATCGCTCCCGAGGCGAGAGCCAAATGGAT
AGAGGCAACGGTGGAAGAGGCGATCACCGTCACCACGACGGTGCTTCTGG
ACAGGATGCTGGTCAACCGACACCTGAACAAGGAGCTTCTGTGGTCCCTG
CTCGGCGAGATCGACGAGGTCGACGAGATAAAGGTCAAGACGCTTGCCGG
TCCCACTGCAGACGCCGTACTCGCCCTCCTCCGAAGAAAGTTTTCGGCGA
TGGAGGGGCGAGACAGAGAGCGGAGCACGGGCGTTCGGGCGACGAGCAGC
GCGGCCGGCGCCGCCGTCGCTGCCCTAGAGGCAGCTTCCGCCAGTCCGTC
GTCGCAACCGCATGGTGGGCGAGGAACTTCGGTACCCCTGCACCATGACC
TCCATCTACGGAGGTTCGGTCCTCAGCCTCGGTATGGACGGTAGCCTCCT
CATCGCTCCCGAGGCGAGAGCCAAATGGATAGAGGCAACGGTGGAAGAGG
CGATCACCGTCACCACGACGGTGCTTCTGGACAGGATGCTGGTCAACCGA
CACCTGAACAAGGAGCTTCTGTGGTCCCTGCTCGGCGAGATCGACGAGGT
CGACGAGATAAAGGTCAAGACGCTTGCCGGTCCCACTGCAGACGCCGTAC
TCGCCCTCCTCCGAAGAAAGTTTTCGGCGATGGAGGGGCGAGACAGAGAG
CGGAGCACGGGCGTTCGGGCGACGAGCAGCGCGGCCGGCGCCGCCGTCGC
TGCCCTAGAGGCAGCTTCCGCCAGTCCGTCGTCGCAACCGCATGCGGGGC
ACCCGGGCACCAGCACCGGCCGCCCATCGGGCGTGGGAGAATCGCCGCCG
CCGCCGCCGTCTCAGGAGTGGGGGGACGATGTGGTACTGCGTATCACAAC
CACCGGGAGTCTGCGGGGCACCCGGGCACCAGCACCGGCCGCCCATCGGG
CGTGGGAGAATCGCCGCCGCCGCCGCCGTCTCAGGAGTGGGGGGACGATG
TGGTACTGCGTATCACAACCACCGGGAGTCTG
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