mRNA_H-canaliculatus_F_contig12207.1895.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12207.1895.1
Unique NamemRNA_H-canaliculatus_F_contig12207.1895.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12207.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12207contigH-canaliculatus_F_contig12207:1717..1893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size169
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.9924679-CDS-H-canaliculatus_F_contig12207:1716..18011622928934.9924679-CDS-H-canaliculatus_F_contig12207:1716..1801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 1717..1801 -
1696845619.1826365-CDS-H-canaliculatus_F_contig12207:1716..18011696845619.1826365-CDS-H-canaliculatus_F_contig12207:1716..1801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 1717..1801 -
1622928935.0069962-CDS-H-canaliculatus_F_contig12207:1810..18931622928935.0069962-CDS-H-canaliculatus_F_contig12207:1810..1893Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 1811..1893 -
1696845619.1950488-CDS-H-canaliculatus_F_contig12207:1810..18931696845619.1950488-CDS-H-canaliculatus_F_contig12207:1810..1893Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12207 1811..1893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12207.1895.1prot_H-canaliculatus_F_contig12207.1895.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12207 1717..1893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12207.1895.1

>prot_H-canaliculatus_F_contig12207.1895.1 ID=prot_H-canaliculatus_F_contig12207.1895.1|Name=mRNA_H-canaliculatus_F_contig12207.1895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
ERLARRLRCVPGVRKRQVQARKLSERVRRGSYSAKTPPRTKHGFICDREL
PRRYRL
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mRNA from alignment at H-canaliculatus_F_contig12207:1717..1893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12207.1895.1 ID=mRNA_H-canaliculatus_F_contig12207.1895.1|Name=mRNA_H-canaliculatus_F_contig12207.1895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=177bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12207:1717..1893- (Hapterophycus canaliculatus Oshoro5f female)
GAGCGTTTAGCCAGAAGATTGCGCTGTGTGCCTGGGGTACGGAAGCGCCA
AGTGCAAGCTAGAAAGCTGAGCGAGCGTGTGAGGCGGAGCAGGCGGGGCA
GCTACAGCGCAAAGACGCCGCCAAGGACCAAGCACGGGTTCATCTGTGAT
CGTGAGCTTCCAAGACGGTACCGACTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12207:1717..1893-

>mRNA_H-canaliculatus_F_contig12207.1895.1 ID=mRNA_H-canaliculatus_F_contig12207.1895.1|Name=mRNA_H-canaliculatus_F_contig12207.1895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12207:1717..1893- (Hapterophycus canaliculatus Oshoro5f female)
GAGCGTTTAGCCAGAAGATTGCGCTGTGTGCCTGGGGTACGGAAGCGCCA
AGTGCAAGCTAGAAAGCTGAGCGAGCGTGTGAGGAGCGTTTAGCCAGAAG
ATTGCGCTGTGTGCCTGGGGTACGGAAGCGCCAAGTGCAAGCTAGAAAGC
TGAGCGAGCGTGTGAGGCGGGGCAGCTACAGCGCAAAGACGCCGCCAAGG
ACCAAGCACGGGTTCATCTGTGATCGTGAGCTTCCAAGACGGTACCGACT
AGCGGGGCAGCTACAGCGCAAAGACGCCGCCAAGGACCAAGCACGGGTTC
ATCTGTGATCGTGAGCTTCCAAGACGGTACCGACTA
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