mRNA_H-canaliculatus_F_contig1220.1890.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1220.1890.1
Unique NamemRNA_H-canaliculatus_F_contig1220.1890.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 1.220e-132
Identity = 234/408 (57.35%), Postives = 268/408 (65.69%), Query Frame = 1 
Query:  256 PTDVLHLDEDFAAICKPPLMHVHRPEFGTKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEAVKVLHQALADPRSSKTYVAIVRGSGQGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLATLPGAGSSVWKSAAGGELSSSGAAAVTAEGVYRESGIKFE--HPPLVRGEGGEE-NRTRGSGGGSEEAGPSQEEGKAARVDTRGAAAAGSARKGVQTPAEPRKALSEAS----RATSGLELARAFPA---------EPLLDVRGETSGGEVLPSTIQGAAAAGSSGPIDVGAGSEEGVLKGKGFRVYSEPPDDMMKFLRGMSWWEEGMI 1431
            P +VLH +E FA + KPP MH HRPEFG++D +FVMQKAR+QLGRR+FLPHRLDR TSGCLL+GF   A KVLHQ LA P SSKTY+AIVRGSG  FVGKGWFTVDR IKD+KKILREASTRFLFV+GG+DPDPRCC VLAQPSTGRFHQIRRHLNGLSHPIVGDSVHG+ RFNREVA HRN APAGRLMLHCLRLSL TLP  GS   KSA G  LS       T    Y  S  K E  H      E GE  +R R  G            G    VD R A A+GS  + VQ P E  KA S       +  S  + AR  PA         EP +    E S   + PS  +  ++     P  +   ++E +++ +GF VY+EPPDDMM+FLRGMSWWEEG+ 
Sbjct:  131 PLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGHRNSAPAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPD---KDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDG-----------HGNTTGVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAA-ISPSVGKKESSTRGCRPRGIDGEAQEDLVE-EGFHVYAEPPDDMMEFLRGMSWWEEGLF 522
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A7S1FQ02_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA)

HSP 1 Score: 183 bits (465), Expect = 3.700e-49
Identity = 105/238 (44.12%), Postives = 138/238 (57.98%), Query Frame = 1 
Query:  256 PTDVLHLDED-FAAICKPPLMHVHRPEF-------GTKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEA------------------------VKVLHQALADPRSSKTYVAIVRGS----GQGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDP-DPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLATL 858
            PT +L  D   +  + KPP +  HR ++       GT +   ++Q+ R+Q+GRR+ L HRLDRG SGCLLL F  ++                         + L  +LAD R+ KTYVA+VRG     G+    +GWF VDR I+D + + REA T+F FV G DD    R  +VLA+P TGR+HQIRRHLNGLSHPI+GDS HGNSR NRE  + R   P  RL LH  ++SL +L
Sbjct:   67 PTRILSTDSSTYLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCAARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREWRSKRG-LPGQRLCLHLAKMSLPSL 303
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A1Z5J6G5_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO)

HSP 1 Score: 178 bits (452), Expect = 1.250e-47
Identity = 99/207 (47.83%), Postives = 134/207 (64.73%), Query Frame = 1 
Query:  265 VLHLDEDFAAICKPPLMHVHRPEF-GTKDKEFV--MQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEA-VKVLHQALADPRSSKTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD--PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLAT 855
            +L   +D+  + KPP +  H  ++ G++ ++ +  +Q+ R  +G RI L HRLDRG SGCLL+ +  +     L QA+A+  ++KTY+AIVRG G    +    KGWF VDR IK+++ +L EAST F FV G  + D  PR  LVLA+P TGR+HQIRRHLNGLSHPI+GDS HGNS+ N+E  A R   P  R  LH  RL L+T
Sbjct:   60 ILAKSDDYLVVDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKDGKTATLSQAMAE-NATKTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRAQRGMLPE-RTCLHLARLQLST 264
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A7S2LAN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.300e-47
Identity = 103/211 (48.82%), Postives = 125/211 (59.24%), Query Frame = 1 
Query:  262 DVLHLDEDFAAICKPPLMHVHRPEF-GTKDKEFVM-QKARNQLGRRIFLPHRLDRGTSGCLLLGFGPE-------AVKVLHQALADPRSSKTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPDP--RCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 849
            ++L      A   KPP +  H  ++ G K+ E  M Q+ R+ +GRR+ L HRLDRG SGCLL     E         KVL  AL  P ++KTYVAIVRG G    + F GKGWF +DR IKD+  I   A T F FV G +  +   R  LVLA+PSTGR+HQIRRHLNGLSHPI+GDS HGNSR NRE        P  R+ LH  R+ L
Sbjct:   56 EILSRGPHHAIANKPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNREW--RDRGLPGERICLHLARIQL 264
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A1Z5K7F0_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO)

HSP 1 Score: 171 bits (434), Expect = 5.130e-45
Identity = 95/209 (45.45%), Postives = 133/209 (63.64%), Query Frame = 1 
Query:  265 VLHLDEDFAAICKPPLMHVHRPEF-GTKDKEFV--MQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPE---AVKVLHQALADPRSSKTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD--PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLAT 855
            ++   +D+  + KPP +  H  E+ G++ ++ +  +Q+ R  +G RI L HRLDR  SGCLL+ +  +      +  QA+A+  ++KTY+A+VRG G    +    KGWF VDR IK+++ +L EAST F FV G  + D  PR  LVLA+P TGR+HQIRRHLNGLSHPI+GDS HGNS+ N+E  + R   P  R  LH  RL L+T
Sbjct:   56 IVAKSDDYLVVDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAE-NATKTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQRGMLPE-RTCLHLARLQLST 262
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A7S3ZM53_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.790e-44
Identity = 100/221 (45.25%), Postives = 128/221 (57.92%), Query Frame = 1 
Query:  256 PTDVLHLDEDFAAICKPPLMHVHRPEFGTKDKEF-VMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGP-----EAVKVLHQALADPRSSKTYVAIVRGSG---QGFVGK-------------GWFTVDRAIKDDKKILREASTRFLFVKG-GDDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 849
            P ++L+  + FA + KP  +  H  E+  KD    ++Q+AR+ LGRR+ L HRLDRG SGC++  +       E    L +ALA     KTYVA+VRG G   +  + K             GWF VDR IKDD+     A+T F FV   G +   R  LV A+P+TGR+HQIRRHLNGLSHPI+GDS HGNSR NRE    R+  P  RL LH  R+SL
Sbjct:   41 PLEILYEGDTFAIVAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALAA--GQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREWRKERD-LPGARLCLHLCRISL 258
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: B7FYH0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC)

HSP 1 Score: 158 bits (399), Expect = 3.340e-40
Identity = 96/219 (43.84%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  265 VLHLDEDFAAICKPPLMHVHRPEF-GTKDKEF---VMQKARNQLGRR-IFLPHRLDRGTSGCLLLGFG----------PEAVKVLHQALADPRSSKTYVAIVRGSG--QG--FVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD-----PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 849
            +L   + +  + KPP +  H  E+ G++   F   ++Q+ R  +G   + L HRL+ G SGCLLL +           P     L  ++ +  S KTY+A+VRG G  QG  F  +GWF VDR IK++K IL  A+T F FV G D+       PR  LVLA+P TGR+HQIRRHLNGLSHPI+GD+ HGNS  NRE    R   PA R  LH  RL L
Sbjct:   91 ILARTDRYVVVAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREWRDLRG-MPAQRTCLHLARLQL 308
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A1E7F626_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA)

HSP 1 Score: 154 bits (390), Expect = 9.000e-40
Identity = 89/224 (39.73%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:  265 VLHLDEDFAAICKPPLMHVHRPEFG-----------TKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGF------GPEAVKVLHQALADPRSS-----KTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD---PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 849
            +L   ++   + KP  +  HR ++            T ++  ++Q+ R  +G ++ L HRLDRG SGCLL  F      G  A  ++ + + +  SS     KTY+AIVRG G    + F  +GWF VDR IKD+   L+ A++ F F+ G DD +   PR  LVLA+  TGR+HQIR+HLNGLSHPI+GDS HG S+ NRE    +      R+ LH L+L L
Sbjct:   14 ILDRGDNHVVVSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWI-EKWDLKRERICLHLLKLEL 236
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BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: A0A448Z1P7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA)

HSP 1 Score: 156 bits (394), Expect = 9.050e-39
Identity = 92/227 (40.53%), Postives = 126/227 (55.51%), Query Frame = 1 
Query:  265 VLHLDEDFAAICKPPLMHVHRPEFGTKDKEF-----------VMQKARNQLGRRIFLPHRLDRGTSGCLLLGF------GPEAVKVLHQALADPRSS-KTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD------PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLATLP 861
            +L    +   + KPP +  HR ++    K+            ++Q+AR  +G R+ L HRLDRG SGCLL+ F      G  A  VL +++    SS KTY+A+VRG G    + F  +GWF V R IK++   L+ A++ F F+ G  + +      PR  LVLA+  TGR+HQIR+HLNGLSHPI+GDS HGNS+ NRE        P  R  LH L+L L   P
Sbjct:   99 ILDRGPNHLVVSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREWRQKWGLEPE-RTCLHLLKLELPATP 324
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Match: R1EHE9_EMIHU (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EHE9_EMIHU)

HSP 1 Score: 145 bits (365), Expect = 1.560e-36
Identity = 75/185 (40.54%), Postives = 106/185 (57.30%), Query Frame = 1 
Query:  265 VLHLDEDFAAICKPPLMHVHRPEFGTKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEAVKVLHQALADPRSSKTYVAIVRGSGQGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPDPR-------------CCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNR 780
            +L     F  + KP  + VHR ++  K    ++Q  R+QLG ++   HRLD GTSGCL+     E    L +A A  R  KTY+A+ RG+    +G+G   V+R ++DDK +LR A T  + + G D  +                 LV+A+P+TGRFHQIR+HL GLSHPI+GD+ HG+SR NR
Sbjct:   17 ILARRPGFCVVAKPAGLVVHRNDWSRKGDVALLQLLRDQLGTQVNPVHRLDAGTSGCLVFAEDSETTAALQRAFASGRVRKTYIAVARGNAMPTLGEG-LVVERPVRDDKGVLRAARTELMCLGGCDGEEVAGEGEAVTGRLNLGASLVVAEPTTGRFHQIRKHLGGLSHPILGDAKHGDSRVNR 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1220.1890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7K6_9PHAE1.220e-13257.35PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S1FQ02_9STRA3.700e-4944.12Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5J6G5_FISSO1.250e-4747.83PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S2LAN5_9STRA1.300e-4748.82Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5K7F0_FISSO5.130e-4545.45PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S3ZM53_9STRA6.790e-4445.25Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
B7FYH0_PHATC3.340e-4043.84Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F626_9STRA9.000e-4039.73Pseudouridine synthase (Fragment) n=1 Tax=Fragilar... [more]
A0A448Z1P7_9STRA9.050e-3940.53PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
R1EHE9_EMIHU1.560e-3640.54PseudoU_synth_2 domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1220contigH-canaliculatus_F_contig1220:22850..26646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.1
Seed ortholog evalue3.4e-112
Seed eggNOG ortholog2880.D7G7M0
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein
Ec32 orthologEc-22_001870.1
Exons7
Model size1724
Cds size1413
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.4456525-UTR-H-canaliculatus_F_contig1220:22849..230881622928934.4456525-UTR-H-canaliculatus_F_contig1220:22849..23088Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1220 22850..23088 -
1696845618.988807-UTR-H-canaliculatus_F_contig1220:22849..230881696845618.988807-UTR-H-canaliculatus_F_contig1220:22849..23088Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1220 22850..23088 -
1622928934.5369859-UTR-H-canaliculatus_F_contig1220:26574..266461622928934.5369859-UTR-H-canaliculatus_F_contig1220:26574..26646Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1220 26575..26646 -
1696845619.0802248-UTR-H-canaliculatus_F_contig1220:26574..266461696845619.0802248-UTR-H-canaliculatus_F_contig1220:26574..26646Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1220 26575..26646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928934.459948-CDS-H-canaliculatus_F_contig1220:23088..238781622928934.459948-CDS-H-canaliculatus_F_contig1220:23088..23878Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 23089..23878 -
1696845619.00024-CDS-H-canaliculatus_F_contig1220:23088..238781696845619.00024-CDS-H-canaliculatus_F_contig1220:23088..23878Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 23089..23878 -
1622928934.4695354-CDS-H-canaliculatus_F_contig1220:24097..242251622928934.4695354-CDS-H-canaliculatus_F_contig1220:24097..24225Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 24098..24225 -
1696845619.0168731-CDS-H-canaliculatus_F_contig1220:24097..242251696845619.0168731-CDS-H-canaliculatus_F_contig1220:24097..24225Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 24098..24225 -
1622928934.47861-CDS-H-canaliculatus_F_contig1220:24542..246411622928934.47861-CDS-H-canaliculatus_F_contig1220:24542..24641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 24543..24641 -
1696845619.0306518-CDS-H-canaliculatus_F_contig1220:24542..246411696845619.0306518-CDS-H-canaliculatus_F_contig1220:24542..24641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 24543..24641 -
1622928934.4890192-CDS-H-canaliculatus_F_contig1220:24973..250711622928934.4890192-CDS-H-canaliculatus_F_contig1220:24973..25071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 24974..25071 -
1696845619.0438983-CDS-H-canaliculatus_F_contig1220:24973..250711696845619.0438983-CDS-H-canaliculatus_F_contig1220:24973..25071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 24974..25071 -
1622928934.4993544-CDS-H-canaliculatus_F_contig1220:25380..254601622928934.4993544-CDS-H-canaliculatus_F_contig1220:25380..25460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 25381..25460 -
1696845619.0535111-CDS-H-canaliculatus_F_contig1220:25380..254601696845619.0535111-CDS-H-canaliculatus_F_contig1220:25380..25460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 25381..25460 -
1622928934.5141835-CDS-H-canaliculatus_F_contig1220:26101..261271622928934.5141835-CDS-H-canaliculatus_F_contig1220:26101..26127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 26102..26127 -
1696845619.062931-CDS-H-canaliculatus_F_contig1220:26101..261271696845619.062931-CDS-H-canaliculatus_F_contig1220:26101..26127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 26102..26127 -
1622928934.525952-CDS-H-canaliculatus_F_contig1220:26382..265741622928934.525952-CDS-H-canaliculatus_F_contig1220:26382..26574Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 26383..26574 -
1696845619.0717366-CDS-H-canaliculatus_F_contig1220:26382..265741696845619.0717366-CDS-H-canaliculatus_F_contig1220:26382..26574Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1220 26383..26574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1220.1890.1prot_H-canaliculatus_F_contig1220.1890.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1220 23089..26574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1220.1890.1

>prot_H-canaliculatus_F_contig1220.1890.1 ID=prot_H-canaliculatus_F_contig1220.1890.1|Name=mRNA_H-canaliculatus_F_contig1220.1890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=471bp
MLQLPAKAARVILYCGALSLHPSHFRAIRAFDFRPPVYTTIDQHRKSETQ
IKHDPRRWRRRPTDVLHLDEDFAAICKPPLMHVHRPEFGTKDKEFVMQKA
RNQLGRRIFLPHRLDRGTSGCLLLGFGPEAVKVLHQALADPRSSKTYVAI
VRGSGQGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPDPRCCLV
LAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRL
MLHCLRLSLATLPGAGSSVWKSAAGGELSSSGAAAVTAEGVYRESGIKFE
HPPLVRGEGGEENRTRGSGGGSEEAGPSQEEGKAARVDTRGAAAAGSARK
GVQTPAEPRKALSEASRATSGLELARAFPAEPLLDVRGETSGGEVLPSTI
QGAAAAGSSGPIDVGAGSEEGVLKGKGFRVYSEPPDDMMKFLRGMSWWEE
GMIQAAERSGRQGSSVPPVL*
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mRNA from alignment at H-canaliculatus_F_contig1220:22850..26646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1220.1890.1 ID=mRNA_H-canaliculatus_F_contig1220.1890.1|Name=mRNA_H-canaliculatus_F_contig1220.1890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3797bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1220:22850..26646- (Hapterophycus canaliculatus Oshoro5f female)
CCAACGAGAAACAGAGAAGGGAGAGTCCTAGACTACAATTCAACGCCAAG
GACAGCAGGGCAGCGGTAGTTGATGTTGCAGCTGCCTGCCAAAGCTGCCC
GCGTGATACTGTACTGTGGTGCTCTAAGCCTTCACCCTTCACATTTTCGA
GCGATCCGGGCCTTCGACTTTCGCCCTCCTGTCTACACCACCATCGATCA
ACATCGGAAATCCGAGACACAAATCAAACATGATCCAAGAAGATGGCGAC
GACGCCCTACTGACGCAGGGTATCTTTGCGAGGCGAAGTCGGTGCTGCGA
CAACTAGGGCTGGGTGCAAGTCAGGAGAACGCTCCGCCTGACACGCATCC
GCCGTCGTCCATCGTGCCGTTAGCTCCTGTGGCATCGGGATCTTCTGAGC
AGGATGAACGTCCCGAGAAAAGAGCGGGACGAAGCCCTTCGAAAACTTCG
AGAGGGTCGGCACCGCCGGCTCCTCAAGGGCCGGAGACCCCCGTCGATGC
TCCGTCGCCTCCTTTGGAGGTTCTTCATCTCGACGAGGACTTCGCGTAAG
TACGGTGCATGCGATATTTTACTCCTGAGAGGAATAGGCCAATCTCCGAG
GCGGACGGCGATAGATAAGCGAACACATTTGTAAAATTATCAGTGTCTCA
CCGGCGGGTCGCAGCACCAGAGCCCTCCTGGAAGATACCATGTTGACGTC
ATCCTCAGACTCACGGCAGAAACGTTGAGAGGAAGTGACCGACAGGGGAA
GCCTGGCACCAACACCTTTGCAGTATGTACATGGCTGTATCAGCTAAAGT
GGATGTTATATGTCTAACGTTTGCCATCAAGCACTCTTCACAAAAACAAA
AGTCTTCATGGTCTAGGGCCACGGTCAGCCAGCTTCGGCATGTTGCACGC
CTTTCGTTGCCAGTTGAACACGACACCTCAAAAGCAACAAGACCGTAGTT
ACGCACAATAGCTACTGGCGCCTGTTGGTCGCGACAGACCCCATGTGTTT
GATTTCAGTCCCCCTCCCTTACTCCCGCCTCTGTTTCTCCTTACCATGCC
GAACGATTCGGTCTACATCATTTCCTTGGGTCCCCGACCGTAACGGTGCA
TCTTCTCGGTGGGTCGATGCCGGATCTCCTACCGTCGCTGCGACTACCAC
GACGACCAACTCTTTTTTCCCCCTCCCGCCACGTAGTGCCATCTGCAAGC
CGCCCCTCATGCACGTCCATAGGCCGGAGTTCGGCACCAAGGACAAGGAG
TTCGTGATGCAGAAAGGTGAATGCCCGAGTGCGCAGCCCTGGCGCCGTGC
TGACGACCACCTAGTGGCTCACGATCATCAATCGAATCCTCTGCCTTCGT
AGGGAACACGCGAAGTTAGGCTAGCCACAAAGCGGCTCAAGACCGTCAAT
CGAAGCCGTCGCCTTCGAAGGAGATACGGAACGCCAGCGCAGCACGTGCT
GGTGTTTTCTGGCAGCTTTTTTCGTCGCAGAGCCCACCACCCCTTTCCTG
GCGGCGTGTTCCCTTTGACTTATCCTTGCTGCCTCAACACAACCACGCGC
ACGCCGACCGACCGTCGGTGCTCAGCTCGGAATCAGCTCGGGCGCCGCAT
TTTCCTGCCGCACCGGCTCGACCGCGGAACGTCCGGCTGCCTCCTTCTCG
GCTTCGGCCCGGAGGCGGTGAAGGTGCGCCGAAGCACGATCGCGAGACTA
CGTAGAGTTGCTTGTGGCAGTGGCAAGGGTGGGAAGAGTGTCCCGGACTG
CCTGACCGACCAACTCGCCCCGGAAACGCTACACGCGTAGTAGTCCCTAG
CCTTTTGCTGGTGAAGTCGCGCGAAAGGAAATCTCGCTCGCTGGCGTTTC
GCAAGGTAGTCTGAATCCCCTCCACGTAGGGGTACGGAGTACTGTGTTCG
ATTTTTCGTCGCTTTTCGGTCTTGACGGCAAGCGTCGGCAATCATCGCTG
CAAGCGAGCACCCCGTGATAACGCGTGTTCGTGGCGGTTGATGACTGCCG
TGTAGGTCCTTCACCAAGCGCTCGCTGATCCGAGGTCCAGCAAGACATAC
GTGGCGATCGTCAGGGGCAGCGGGCAGGGGTTTGTCGGCAAGGGGTGGTT
CACGGTGAGAGCTCGGCACCAACCGTCGGAAAGGTGATGCTCAGACACGT
GTCGCTAAGATAATAGGTGTGGTTGTCGATTGTGTTCGCCGAGGACAGGG
TGTATTCATTTTTGCCTGGCGTGTGATCATATCTTTTTGAGGTCTGACAC
GCGAAAGGTCGCGATGCATGGCTGTGGCAGTGGAATTACATCGCTTCGCT
GCGTTAGAAAAGAGACTGCAATTTCTTCCAGGCAATCAAAGAGCAGTTCA
AGACGCAACGAATATCTGAGCCCTGGGTGTGTGTGACAAGGCCATCTTGC
TGCTGTTGCGCCAACGCCTAGGTGGACAGAGCAATCAAGGACGACAAGAA
AATACTGAGAGAGGCATCAACGAGATTCCTTTTTGTCAAGGGAGGAGATG
ATCCTGATCCCAGGTGCTGCCTCGTGCTAGCGCAGCCTTCTACTGGGCGG
TAAGTCAAGTCTCGGGTTTCGTCCCTCACCCATCAAACGCGTGAATAACG
CAGCAGCGGTCGCGACACTCTTGGGAAACCCTTTAATGAGCCAGAAGAGT
GATACACCTCTCCTCCGTAGCTGATGCCTGTCGCTCTCTCCCTGTCGCCG
ATAAAGCGCAACACCCGAAGCATGCCCCACCGAAAAAAAAAACGTGGAAA
ACCGCTCTGCCGCTTCAGGTTTCACCAGATCCGACGGCATCTGAACGGGC
TCAGCCATCCGATCGTCGGCGATTCCGTGCACGGCAACAGCCGCTTCAAC
CGCGAGGTCGCCGCGCACCGGAACCCGGCGCCGGCCGGCCGACTCATGCT
GCACTGCCTCCGGCTGTCTCTCGCGACGTTGCCGGGCGCGGGATCAAGCG
TGTGGAAAAGTGCAGCCGGAGGGGAACTTTCGTCGTCGGGAGCGGCAGCA
GTAACGGCGGAGGGGGTCTACCGTGAGAGCGGGATAAAATTCGAGCACCC
TCCTCTCGTCCGGGGAGAAGGCGGCGAGGAAAATCGTACGAGAGGCAGCG
GTGGCGGGAGCGAGGAGGCGGGGCCGTCGCAAGAAGAAGGCAAGGCTGCC
CGAGTCGACACCAGAGGAGCGGCAGCAGCCGGTTCTGCTCGAAAGGGAGT
TCAGACCCCCGCCGAACCGAGGAAGGCGCTTTCTGAGGCCAGCAGAGCGA
CCTCAGGACTTGAATTAGCTAGAGCGTTCCCCGCCGAACCGCTCCTTGAT
GTTCGGGGTGAAACGAGCGGGGGCGAGGTGTTGCCGTCGACCATTCAGGG
TGCGGCTGCCGCTGGGAGTAGTGGTCCTATCGACGTTGGTGCGGGGTCAG
AGGAGGGGGTGCTAAAGGGGAAAGGCTTTCGGGTGTACTCCGAGCCGCCA
GATGACATGATGAAGTTCTTGCGAGGCATGTCCTGGTGGGAAGAAGGGAT
GATTCAAGCGGCGGAGCGTAGCGGGCGACAGGGTTCATCAGTGCCGCCAG
TGTTGTGAAGAATTGACCGGTATGTTTGTTCTGTTTGAGCTTCTTTTCGG
TGGCATGGTCGCGGGCCGGCGATATTTTGCTTTTGTAGTCGCTCGGACCT
GGAACTTTCTTCGCGCCTTGTTTGCCCTGGCGTCTTCCTGCGGTAGATTT
TCAAGCCTCTCATTGCCGTATCAATGAGCGTTATTTCCTAACATGATGAA
TGTGTGGCTTCGTTTCCATCTCGAAGAATGAGTTATCTTAGCGCGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1220:22850..26646-

>mRNA_H-canaliculatus_F_contig1220.1890.1 ID=mRNA_H-canaliculatus_F_contig1220.1890.1|Name=mRNA_H-canaliculatus_F_contig1220.1890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2826bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1220:22850..26646- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGCAGCTGCCTGCCAAAGCTGCCCGCGTGATACTGTACTGTGGTGC
TCTAAGCCTTCACCCTTCACATTTTCGAGCGATCCGGGCCTTCGACTTTC
GCCCTCCTGTCTACACCACCATCGATCAACATCGGAAATCCGAGACACAA
ATCAAACATGATCCAAGAAGATGGCGACGACGCCCTACTGACATGTTGCA
GCTGCCTGCCAAAGCTGCCCGCGTGATACTGTACTGTGGTGCTCTAAGCC
TTCACCCTTCACATTTTCGAGCGATCCGGGCCTTCGACTTTCGCCCTCCT
GTCTACACCACCATCGATCAACATCGGAAATCCGAGACACAAATCAAACA
TGATCCAAGAAGATGGCGACGACGCCCTACTGACGTTCTTCATCTCGACG
AGGACTTCGCGTTCTTCATCTCGACGAGGACTTCGCTGCCATCTGCAAGC
CGCCCCTCATGCACGTCCATAGGCCGGAGTTCGGCACCAAGGACAAGGAG
TTCGTGATGCAGAAAGTGCCATCTGCAAGCCGCCCCTCATGCACGTCCAT
AGGCCGGAGTTCGGCACCAAGGACAAGGAGTTCGTGATGCAGAAAGCTCG
GAATCAGCTCGGGCGCCGCATTTTCCTGCCGCACCGGCTCGACCGCGGAA
CGTCCGGCTGCCTCCTTCTCGGCTTCGGCCCGGAGGCGGTGAAGCTCGGA
ATCAGCTCGGGCGCCGCATTTTCCTGCCGCACCGGCTCGACCGCGGAACG
TCCGGCTGCCTCCTTCTCGGCTTCGGCCCGGAGGCGGTGAAGGTCCTTCA
CCAAGCGCTCGCTGATCCGAGGTCCAGCAAGACATACGTGGCGATCGTCA
GGGGCAGCGGGCAGGGGTTTGTCGGCAAGGGGTGGTTCACGGTCCTTCAC
CAAGCGCTCGCTGATCCGAGGTCCAGCAAGACATACGTGGCGATCGTCAG
GGGCAGCGGGCAGGGGTTTGTCGGCAAGGGGTGGTTCACGGTGGACAGAG
CAATCAAGGACGACAAGAAAATACTGAGAGAGGCATCAACGAGATTCCTT
TTTGTCAAGGGAGGAGATGATCCTGATCCCAGGTGCTGCCTCGTGCTAGC
GCAGCCTTCTACTGGGCGGTGGACAGAGCAATCAAGGACGACAAGAAAAT
ACTGAGAGAGGCATCAACGAGATTCCTTTTTGTCAAGGGAGGAGATGATC
CTGATCCCAGGTGCTGCCTCGTGCTAGCGCAGCCTTCTACTGGGCGGTTT
CACCAGATCCGACGGCATCTGAACGGGCTCAGCCATCCGATCGTCGGCGA
TTCCGTGCACGGCAACAGCCGCTTCAACCGCGAGGTCGCCGCGCACCGGA
ACCCGGCGCCGGCCGGCCGACTCATGCTGCACTGCCTCCGGCTGTCTCTC
GCGACGTTGCCGGGCGCGGGATCAAGCGTGTGGAAAAGTGCAGCCGGAGG
GGAACTTTCGTCGTCGGGAGCGGCAGCAGTAACGGCGGAGGGGGTCTACC
GTGAGAGCGGGATAAAATTCGAGCACCCTCCTCTCGTCCGGGGAGAAGGC
GGCGAGGAAAATCGTACGAGAGGCAGCGGTGGCGGGAGCGAGGAGGCGGG
GCCGTCGCAAGAAGAAGGCAAGGCTGCCCGAGTCGACACCAGAGGAGCGG
CAGCAGCCGGTTCTGCTCGAAAGGGAGTTCAGACCCCCGCCGAACCGAGG
AAGGCGCTTTCTGAGGCCAGCAGAGCGACCTCAGGACTTGAATTAGCTAG
AGCGTTCCCCGCCGAACCGCTCCTTGATGTTCGGGGTGAAACGAGCGGGG
GCGAGGTGTTGCCGTCGACCATTCAGGGTGCGGCTGCCGCTGGGAGTAGT
GGTCCTATCGACGTTGGTGCGGGGTCAGAGGAGGGGGTGCTAAAGGGGAA
AGGCTTTCGGGTGTACTCCGAGCCGCCAGATGACATGATGAAGTTCTTGC
GAGGCATGTCCTGGTGGGAAGAAGGGATGATTCAAGCGGCGGAGCGTAGC
GGGCGACAGGGTTCATCAGTGCCGCCAGTGTTGTGAGTTTCACCAGATCC
GACGGCATCTGAACGGGCTCAGCCATCCGATCGTCGGCGATTCCGTGCAC
GGCAACAGCCGCTTCAACCGCGAGGTCGCCGCGCACCGGAACCCGGCGCC
GGCCGGCCGACTCATGCTGCACTGCCTCCGGCTGTCTCTCGCGACGTTGC
CGGGCGCGGGATCAAGCGTGTGGAAAAGTGCAGCCGGAGGGGAACTTTCG
TCGTCGGGAGCGGCAGCAGTAACGGCGGAGGGGGTCTACCGTGAGAGCGG
GATAAAATTCGAGCACCCTCCTCTCGTCCGGGGAGAAGGCGGCGAGGAAA
ATCGTACGAGAGGCAGCGGTGGCGGGAGCGAGGAGGCGGGGCCGTCGCAA
GAAGAAGGCAAGGCTGCCCGAGTCGACACCAGAGGAGCGGCAGCAGCCGG
TTCTGCTCGAAAGGGAGTTCAGACCCCCGCCGAACCGAGGAAGGCGCTTT
CTGAGGCCAGCAGAGCGACCTCAGGACTTGAATTAGCTAGAGCGTTCCCC
GCCGAACCGCTCCTTGATGTTCGGGGTGAAACGAGCGGGGGCGAGGTGTT
GCCGTCGACCATTCAGGGTGCGGCTGCCGCTGGGAGTAGTGGTCCTATCG
ACGTTGGTGCGGGGTCAGAGGAGGGGGTGCTAAAGGGGAAAGGCTTTCGG
GTGTACTCCGAGCCGCCAGATGACATGATGAAGTTCTTGCGAGGCATGTC
CTGGTGGGAAGAAGGGATGATTCAAGCGGCGGAGCGTAGCGGGCGACAGG
GTTCATCAGTGCCGCCAGTGTTGTGA
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