mRNA_H-canaliculatus_F_contig12193.1885.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12193.1885.1
Unique NamemRNA_H-canaliculatus_F_contig12193.1885.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12193.1885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12193contigH-canaliculatus_F_contig12193:2757..3275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.8237462-CDS-H-canaliculatus_F_contig12193:2756..32751622928931.8237462-CDS-H-canaliculatus_F_contig12193:2756..3275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12193 2757..3275 +
1696845617.610698-CDS-H-canaliculatus_F_contig12193:2756..32751696845617.610698-CDS-H-canaliculatus_F_contig12193:2756..3275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12193 2757..3275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12193.1885.1prot_H-canaliculatus_F_contig12193.1885.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12193 2757..3275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12193.1885.1

>prot_H-canaliculatus_F_contig12193.1885.1 ID=prot_H-canaliculatus_F_contig12193.1885.1|Name=mRNA_H-canaliculatus_F_contig12193.1885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=173bp
ALILFNVKQQVGKKNSTVCCGAWNSRNDQCSERRPKRVCDRGRPRFRFDE
SHTRQSRMRPPTRLQMMKTKTRGPLPPRSAAGVVVVRAVRTLRTRAHKSR
LTLVEVSHYFPFTQDRPRLTTLTHARPSPFARQADSLAWSVLASSRFPSL
YPRVVPKPPARGEQNTHRSTSRR
back to top

mRNA from alignment at H-canaliculatus_F_contig12193:2757..3275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12193.1885.1 ID=mRNA_H-canaliculatus_F_contig12193.1885.1|Name=mRNA_H-canaliculatus_F_contig12193.1885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12193:2757..3275+ (Hapterophycus canaliculatus Oshoro5f female)
GCACTTATCTTGTTCAATGTAAAACAACAAGTAGGGAAAAAAAACTCTAC
AGTGTGTTGCGGTGCTTGGAATTCACGGAATGATCAGTGCAGCGAGCGCC
GTCCGAAGAGGGTCTGCGACCGCGGGCGGCCGCGGTTCCGGTTTGACGAA
AGCCACACGAGGCAGTCGCGCATGCGCCCTCCCACACGCTTGCAGATGAT
GAAAACAAAAACGCGTGGTCCCCTTCCGCCTCGATCCGCGGCAGGGGTTG
TGGTTGTGCGTGCTGTGCGGACCTTGCGGACGAGAGCCCACAAGAGTCGT
CTCACGCTGGTCGAAGTCTCACATTATTTCCCATTTACACAAGACCGACC
GAGACTCACAACCCTGACCCACGCCCGACCCTCGCCGTTCGCGCGCCAAG
CCGACTCTCTCGCTTGGTCGGTCCTCGCTTCGTCCCGATTCCCTTCCTTG
TACCCGAGAGTCGTCCCAAAACCACCAGCACGGGGTGAACAAAATACACA
TCGCTCAACCTCTCGCCGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12193:2757..3275+

>mRNA_H-canaliculatus_F_contig12193.1885.1 ID=mRNA_H-canaliculatus_F_contig12193.1885.1|Name=mRNA_H-canaliculatus_F_contig12193.1885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1038bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12193:2757..3275+ (Hapterophycus canaliculatus Oshoro5f female)
GCACTTATCTTGTTCAATGTAAAACAACAAGTAGGGAAAAAAAACTCTAC
AGTGTGTTGCGGTGCTTGGAATTCACGGAATGATCAGTGCAGCGAGCGCC
GTCCGAAGAGGGTCTGCGACCGCGGGCGGCCGCGGTTCCGGTTTGACGAA
AGCCACACGAGGCAGTCGCGCATGCGCCCTCCCACACGCTTGCAGATGAT
GAAAACAAAAACGCGTGGTCCCCTTCCGCCTCGATCCGCGGCAGGGGTTG
TGGTTGTGCGTGCTGTGCGGACCTTGCGGACGAGAGCCCACAAGAGTCGT
CTCACGCTGGTCGAAGTCTCACATTATTTCCCATTTACACAAGACCGACC
GAGACTCACAACCCTGACCCACGCCCGACCCTCGCCGTTCGCGCGCCAAG
CCGACTCTCTCGCTTGGTCGGTCCTCGCTTCGTCCCGATTCCCTTCCTTG
TACCCGAGAGTCGTCCCAAAACCACCAGCACGGGGTGAACAAAATACACA
TCGCTCAACCTCTCGCCGAGCACTTATCTTGTTCAATGTAAAACAACAAG
TAGGGAAAAAAAACTCTACAGTGTGTTGCGGTGCTTGGAATTCACGGAAT
GATCAGTGCAGCGAGCGCCGTCCGAAGAGGGTCTGCGACCGCGGGCGGCC
GCGGTTCCGGTTTGACGAAAGCCACACGAGGCAGTCGCGCATGCGCCCTC
CCACACGCTTGCAGATGATGAAAACAAAAACGCGTGGTCCCCTTCCGCCT
CGATCCGCGGCAGGGGTTGTGGTTGTGCGTGCTGTGCGGACCTTGCGGAC
GAGAGCCCACAAGAGTCGTCTCACGCTGGTCGAAGTCTCACATTATTTCC
CATTTACACAAGACCGACCGAGACTCACAACCCTGACCCACGCCCGACCC
TCGCCGTTCGCGCGCCAAGCCGACTCTCTCGCTTGGTCGGTCCTCGCTTC
GTCCCGATTCCCTTCCTTGTACCCGAGAGTCGTCCCAAAACCACCAGCAC
GGGGTGAACAAAATACACATCGCTCAACCTCTCGCCGA
back to top