mRNA_H-canaliculatus_F_contig12190.1884.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12190.1884.1
Unique NamemRNA_H-canaliculatus_F_contig12190.1884.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 6.330e-66
Identity = 119/137 (86.86%), Postives = 126/137 (91.97%), Query Frame = 1
Query:  178 APRVSLAGAVSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARESARNSASKS 588
            A  + L  AVSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETD+LIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQG+VAEYDTPLALLQ+PYSQFR MCEK GDLEGLKRVA+E+A  S+  S
Sbjct: 1362 AQELKLQHAVSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDALIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGQVAEYDTPLALLQDPYSQFRGMCEKAGDLEGLKRVAQEAAAKSSGSS 1498          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A835YUJ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ8_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.510e-44
Identity = 84/123 (68.29%), Postives = 103/123 (83.74%), Query Frame = 1
Query:  193 LAGAVSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARE 561
            L+  +S  GSNLSVGQRQLMCMARALLRRAAVL++DEATAN+D ETD++IQE MKEGF DCTILCIAHRLHTV +YD++LVL+ G+VAEYDTP  LL++  S+F  +C ++GDL  L R+A E
Sbjct: 1205 LSHEISDAGSNLSVGQRQLMCMARALLRRAAVLILDEATANIDRETDTIIQETMKEGFQDCTILCIAHRLHTVVYYDKILVLEAGRVAEYDTPRHLLKDKSSRFYGLCRQSGDLRTLIRMAEE 1327          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A836CNA1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA1_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.710e-43
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 1
Query:  217 GSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARE 561
            GSNLS+GQRQLMCMARAL+RRA++LVMDEATA VDPETD LIQE M+    DCTILCIAHRLHT+ FYDR+LVL++G+VAEY  PLALL++P+S FRA+CEK+G L  L  VA +
Sbjct:  590 GSNLSMGQRQLMCMARALVRRASILVMDEATAAVDPETDILIQEVMRSELRDCTILCIAHRLHTIIFYDRILVLERGRVAEYAPPLALLRDPHSLFRALCEKSGALAELLAVAED 704          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.190e-41
Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 1
Query:  205 VSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVAR 558
            V   G N SVG+RQLMCMARALLR+++VLVMDEATANVDPETD LIQ  M+E F +CT+LCIAHRLHT+ +YDRV+VL++G++ EY +PL LL +P S F A+C+KTG LE LK  AR
Sbjct: 1459 VDESGGNFSVGERQLMCMARALLRKSSVLVMDEATANVDPETDLLIQSTMREEFRNCTVLCIAHRLHTIIYYDRVMVLERGELMEYASPLELLDDPNSLFYALCKKTGALEQLKETAR 1576          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A7S3Y0L7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0L7_HETAK)

HSP 1 Score: 157 bits (396), Expect = 1.510e-40
Identity = 75/131 (57.25%), Postives = 102/131 (77.86%), Query Frame = 1
Query:  193 LAGAVSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARESARNSASK 585
            L  AV+  G NLSVGQRQL+C+ARA LRRA +LVMDEATANVDP+TD L+QEA++  F   T+LCIAHRLHTV +YDRV+VL++G++AEYD+P  LL+   S F  +CE++GDL+ L+  A ++  ++ S+
Sbjct:  385 LGAAVAEGGGNLSVGQRQLLCLARAALRRAPILVMDEATANVDPDTDELLQEALRTEFAGATVLCIAHRLHTVIYYDRVMVLERGQLAEYDSPAVLLRQKGSLFFKLCERSGDLDQLRATAEDAEASALSE 515          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A7S3GMW8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMW8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.130e-39
Identity = 74/132 (56.06%), Postives = 97/132 (73.48%), Query Frame = 1
Query:  184 RVSLAGAVSAE-GSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARESARNS 576
            R SLA    AE G+N S+GQRQL+CMARA+LR+A+VLV+DE TA+VD ETD+LIQE ++   G CT++CIAHRLHT+A+YD VLV+DQG+ AE+  P  L+Q   S FR MC  +GD E L   A ++ + S
Sbjct:  118 RGSLANKQVAEKGANFSLGQRQLLCMARAILRKASVLVLDECTASVDHETDALIQETVRRELGHCTVICIAHRLHTIAYYDNVLVMDQGRKAEFAPPFELIQQENSLFRQMCVTSGDYEELYATAEDAYKQS 249          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A7S0XFK2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XFK2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.280e-38
Identity = 72/121 (59.50%), Postives = 97/121 (80.17%), Query Frame = 1
Query:  205 VSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARESA 567
            ++ +GSNLSVGQRQL+CMARALLR+A +LV+DE TANVD ETDSLIQ+ ++    + T+LCIAHRLHT+AFYD VLV+D+G VAEYD+PL L+Q+  S F +MC  +GD + L  +A+ ++
Sbjct:  524 IAEKGSNLSVGQRQLLCMARALLRKAPILVLDECTANVDHETDSLIQDTVRNELTNITVLCIAHRLHTIAFYDLVLVMDKGSVAEYDSPLKLMQDDKSIFYSMCMNSGDFDNLYNIAKAAS 644          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A4V1IPH2_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IPH2_9FUNG)

HSP 1 Score: 142 bits (359), Expect = 2.810e-37
Identity = 73/128 (57.03%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  190 SLAGAVSAEGSNLSVGQRQLMCMARALLRRAAVLVMDE--ATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARESA 567
            SL  AV+  G N S GQRQL+C+ARALLRR+ ++V+DE  ATA+VD  TD+ IQE+++  F +CT+LC+AHRL TVA YDR+LVLD G+V E  TP ALLQ P   FR MCE+T DL  L  +A ++A
Sbjct:  142 SLESAVAENGGNFSQGQRQLLCLARALLRRSRIVVLDELRATASVDDRTDAAIQESIRTEFKNCTVLCVAHRLRTVADYDRILVLDDGRVVELGTPHALLQKPDGWFRRMCEETADLSALVELAGQAA 269          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: A0A4Y2L9K4_ARAVE (Multidrug resistance-associated protein 4 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2L9K4_ARAVE)

HSP 1 Score: 142 bits (358), Expect = 2.040e-36
Identity = 76/128 (59.38%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  205 VSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKRVARESARNSASKS 588
            VS  G N SVGQRQL+C+ARA+LRR  VLV+DEATANVDP TDSLIQE +++ F  CT+L IAHRLHT+   DRVLVLD G+V E+D P  LLQN  S F  M + TG   G+ +  RE ARN+  K+
Sbjct:  166 VSEGGGNFSVGQRQLICLARAILRRNRVLVLDEATANVDPNTDSLIQETIRDRFAHCTVLTIAHRLHTIMDSDRVLVLDAGEVKEFDAPFTLLQNRNSLFSHMVQMTGP--GMAQQLREVARNAYLKN 291          
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Match: T1GCD1_MEGSC (ABC transporter domain-containing protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GCD1_MEGSC)

HSP 1 Score: 135 bits (340), Expect = 3.210e-36
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  205 VSAEGSNLSVGQRQLMCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTG--DLEGLKRVARES 564
            V+  GSN SVGQRQL+C+ARA+LR   VLV+DEATANVDP+TD+LIQ+ ++  F +CT+L +AHRLHTV   DR+LV+D G   E+D P  LLQN     R M + TG  D E LKRVA+E+
Sbjct:    2 VTERGSNFSVGQRQLICLARAILRNNKVLVLDEATANVDPQTDALIQKTIRRKFKECTVLTVAHRLHTVMDSDRILVMDAGFAKEFDAPHLLLQNSRGLLRQMVDATGAYDSEQLKRVAKET 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12190.1884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0B6_ECTSI6.330e-6686.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUJ8_9STRA1.510e-4468.29P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CNA1_9STRA1.710e-4371.30P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5K4L0_9PHAE6.190e-4166.10ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S3Y0L7_HETAK1.510e-4057.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3GMW8_9STRA6.130e-3956.06Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0XFK2_9STRA4.280e-3859.50Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A4V1IPH2_9FUNG2.810e-3757.03P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4Y2L9K4_ARAVE2.040e-3659.38Multidrug resistance-associated protein 4 n=1 Tax=... [more]
T1GCD1_MEGSC3.210e-3657.38ABC transporter domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12190contigH-canaliculatus_F_contig12190:473..2617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.3
Seed ortholog evalue1.8e-50
Seed eggNOG ortholog2880.D7G0B6
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons4
Model size892
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12190.1884.1prot_H-canaliculatus_F_contig12190.1884.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12190 708..2368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.648889-UTR-H-canaliculatus_F_contig12190:472..7071622928931.648889-UTR-H-canaliculatus_F_contig12190:472..707Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12190 473..707 -
1696845617.5536442-UTR-H-canaliculatus_F_contig12190:472..7071696845617.5536442-UTR-H-canaliculatus_F_contig12190:472..707Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12190 473..707 -
1622928931.7275848-UTR-H-canaliculatus_F_contig12190:2368..26171622928931.7275848-UTR-H-canaliculatus_F_contig12190:2368..2617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12190 2369..2617 -
1696845617.602532-UTR-H-canaliculatus_F_contig12190:2368..26171696845617.602532-UTR-H-canaliculatus_F_contig12190:2368..2617Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12190 2369..2617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.668857-CDS-H-canaliculatus_F_contig12190:707..8421622928931.668857-CDS-H-canaliculatus_F_contig12190:707..842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 708..842 -
1696845617.5643847-CDS-H-canaliculatus_F_contig12190:707..8421696845617.5643847-CDS-H-canaliculatus_F_contig12190:707..842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 708..842 -
1622928931.681305-CDS-H-canaliculatus_F_contig12190:1371..14951622928931.681305-CDS-H-canaliculatus_F_contig12190:1371..1495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 1372..1495 -
1696845617.572503-CDS-H-canaliculatus_F_contig12190:1371..14951696845617.572503-CDS-H-canaliculatus_F_contig12190:1371..1495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 1372..1495 -
1622928931.6984115-CDS-H-canaliculatus_F_contig12190:2005..20841622928931.6984115-CDS-H-canaliculatus_F_contig12190:2005..2084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 2006..2084 -
1696845617.5842552-CDS-H-canaliculatus_F_contig12190:2005..20841696845617.5842552-CDS-H-canaliculatus_F_contig12190:2005..2084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 2006..2084 -
1622928931.7136037-CDS-H-canaliculatus_F_contig12190:2298..23681622928931.7136037-CDS-H-canaliculatus_F_contig12190:2298..2368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 2299..2368 -
1696845617.5937395-CDS-H-canaliculatus_F_contig12190:2298..23681696845617.5937395-CDS-H-canaliculatus_F_contig12190:2298..2368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12190 2299..2368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12190.1884.1

>prot_H-canaliculatus_F_contig12190.1884.1 ID=prot_H-canaliculatus_F_contig12190.1884.1|Name=mRNA_H-canaliculatus_F_contig12190.1884.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=136bp
MCMARALLRRAAVLVMDEATANVDPETDSLIQEAMKEGFGDCTILCIAHR
LHTVAFYDRVLVLDQGKVAEYDTPLALLQNPYSQFRAMCEKTGDLEGLKR
VARESARNSASKSSPGASATGAAAAGIAAAGEDPI*
back to top

mRNA from alignment at H-canaliculatus_F_contig12190:473..2617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12190.1884.1 ID=mRNA_H-canaliculatus_F_contig12190.1884.1|Name=mRNA_H-canaliculatus_F_contig12190.1884.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2145bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12190:473..2617- (Hapterophycus canaliculatus Oshoro5f female)
GCGTCGTTTGCCTCTCGGCTGTTGGCGTCGATGACGCTCCATAGTGCTGC CTGCCGGAATGTCGCCAGTCCCGCCGGGACAAAATCGAAAGGCGTGCCTG ATGGCGTGGCTGCCTAGAGGAATGTCTCGAGCCCTGTCTGCATCTAGTCG ACAGCCGTGCCTGAAACGTTAGATTCTGCCCCACGTGTGTCCCTTGCTGG TGCAGTTTCCGCCGAGGGCAGCAATCTCTCGGTGGGGCAACGGCAGCTGA TGTGCATGGCGAGGGCCCTCCTCAGGCGCGCCGCGGTGCTGGTCATGGAT GAGGCCACGGCTAATGTCGGTGAGAACCCCTCCGTTCACCCCAGCAAGTG CTGGTGCCCCCTCAGGAAGCACTTGTCGGTTTTCTTGTAACTAAACCGCA GTAAATATTTCGAGGTCGAAACCAATCTTGCAGGTCTTGGTTGACCCTCT CACCGGCCCCTTTTTGACTTGAGAAAGCTCACCCTCGCCCCCCCGCCCTT GACCCCCCCATGTGCACGGCGCGATCTACGCAGACCCAGAAACGGATTCT CTGATCCAGGAAGCGATGAAGGAGGGCTTCGGGGACTGCACGATCCTCTG CATCGCACACAGGCATGCATGTCTCTGTCGCGCATTTCCCCAATCAATCG CGCGTGTTTTCGAGGACGCAAGTTGCTTCATGCGGCGTTTGTCGTTGACA ACCGCCCTACCCACTGCAACGTACGACACCGTCCACGTCATGGTCCCTCG CCCCCAACGGGATGCCACGAGACGGGGTGGGATGGTACCAAATCGACCGA AGGCACTATTGCCCTCGGGGATGAAAGCGTTTCACTGGGTGCTTGCCATC TCCCAGCCACCTCGAATGAGGACGTTCACGTGCCGCCTTTCTTTTGGGGG GACCGGCTTGATGGTTCGGGTTTTCGGAGCTGCAAAGTCGCAGAAAATCG TCTGGAATACGCATTTCGTCAACAGCATGAACTTTTGGTCGGGCGCTGAG CCTCGACCCCTTCTTTCCATGGCGACGTCAGCGTTCTCCTGTCTTGCGAG TTTTGTTTTTGTAAACGCTTTTCTCTCACCACGAATTTTTTTTTATGACC GTCTTGCTCTCTCTCTGTGCAGGTTGCACACGGTTGCTTTCTACGACCGG GTGCTGGTCTTGGACCAGGGGAAGGTGGCCGAATACGACACGCCCTTGGC TCTCTTGCAAAACCCTTACAGCCAGTTCCGGGCTATGTGCGAAAAGGTGA GCGTTTCTTTTTTTGTTTGTGGCGGCTTCCACCAGTATCAAAAAGCGCAA GAATGAGCTTAACTTTCCCGCGATCTTGCGGCTGAGAAGTTAACCAAGGG GTCGCCGGGTCGAAAAATGAGGGTAAATCAAGATCTGTGAGTTAGTACCC TCGACAGAGCTAATGTGCCCCGGAGTCTGGTACAGAAGGAGCGCAATGAA GATTGTTCCGGTTGCGTAGCTGCTCGTCCAGGAAGAGAACTTTCTCGCTC GCGCTAATCTTGGATACACGATAACAGGCGCAGGGGTTTCCCATACGTGT GGTAGGTTGGGAACACCGGCAGGCTTCGGGTGCTGCTTTGGCTTTATTTG TTGGCCTTTTCAACAGCGAGAGCCGTCGGCGATGCCGATCGGTTGACATT GAAACGCTAGAAGAGGACAAGAAAAAGAACCAGGCGGGACACGCTTCGCC TAGTGGTGGTCTCAAGCAACCCTTGCTCACGGTGTCTAGTCAATGATCGT TATATCGTCAAAATCGAATCCGCAGACTGGAGACTTGGAAGGGCTCAAGC GCGTCGCGAGAGAGTCCGCCAGGAACTCGGCGAGCAAGTCGTCCCCTGGC GCCAGTGCCACCGGCGCCGCCGCTGCTGGAATCGCCGCCGCCGGCGAAGA TCCCATTTAAATATAAGCGAAGGAGGCACCGGCGCGGCTTCCTCGCCTTT TCGCGGATTTAACAGTCCTCTCCGGAGACCGTCTCAGTCGCCCCCATTCC TGCGTCACCTCGAAACATCCGGAGAATGCCGAAGGGGCTCTGCGGCGGCG GGTGATAACTTGCTGTTTTCTGGTCCGGCGGTGGTTGGTGCCGGTGTCCT CCGGCCGTGGGCGGGCGGCGGCGTCGCATCAGGGGCCGGTGACCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12190:473..2617-

>mRNA_H-canaliculatus_F_contig12190.1884.1 ID=mRNA_H-canaliculatus_F_contig12190.1884.1|Name=mRNA_H-canaliculatus_F_contig12190.1884.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12190:473..2617- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCATGGCGAGGGCCCTCCTCAGGCGCGCCGCGGTGCTGGTCATGGA
TGAGGCCACGGCTAATGTCGATGTGCATGGCGAGGGCCCTCCTCAGGCGC
GCCGCGGTGCTGGTCATGGATGAGGCCACGGCTAATGTCGACCCAGAAAC
GGATTCTCTGATCCAGGAAGCGATGAAGGAGGGCTTCGGGGACTGCACGA
TCCTCTGCATCGCACACAGACCCAGAAACGGATTCTCTGATCCAGGAAGC
GATGAAGGAGGGCTTCGGGGACTGCACGATCCTCTGCATCGCACACAGGT
TGCACACGGTTGCTTTCTACGACCGGGTGCTGGTCTTGGACCAGGGGAAG
GTGGCCGAATACGACACGCCCTTGGCTCTCTTGCAAAACCCTTACAGCCA
GTTCCGGGCTATGTGCGAAAAGGTTGCACACGGTTGCTTTCTACGACCGG
GTGCTGGTCTTGGACCAGGGGAAGGTGGCCGAATACGACACGCCCTTGGC
TCTCTTGCAAAACCCTTACAGCCAGTTCCGGGCTATGTGCGAAAAGACTG
GAGACTTGGAAGGGCTCAAGCGCGTCGCGAGAGAGTCCGCCAGGAACTCG
GCGAGCAAGTCGTCCCCTGGCGCCAGTGCCACCGGCGCCGCCGCTGCTGG
AATCGCCGCCGCCGGCGAAGATCCCATTTAAACTGGAGACTTGGAAGGGC
TCAAGCGCGTCGCGAGAGAGTCCGCCAGGAACTCGGCGAGCAAGTCGTCC
CCTGGCGCCAGTGCCACCGGCGCCGCCGCTGCTGGAATCGCCGCCGCCGG
CGAAGATCCCATTTAA
back to top