mRNA_H-canaliculatus_F_contig12187.1880.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: A0A6H5J7B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B5_9PHAE) HSP 1 Score: 167 bits (424), Expect = 6.210e-46 Identity = 98/156 (62.82%), Postives = 111/156 (71.15%), Query Frame = 1
Query: 1 GAKKAAAEGAAGLLGGQPSVLGLSQRLVAKGLAPNASQANSXXXXXXXXXXXXXXXXXXXXXXXXXXGAARI---GDRLVGEELFQVALADLAYVHLGLNDPVSALTFAGRLLDAKPSAVNAHLAHLYAAEALCLLGRPAEALQHLAPVSENGCSA 459
G KKAAA GAAGLLGGQPSVLG+S RLVAKGLAP+ GAA GD ++ EEL++VALADLAYVHLGL+DPVSALT+AGRLL+ PSAV+ HLAHLYAAEALCLLGRPAEAL+HL+P+SENGCSA
Sbjct: 288 GVKKAAAAGAAGLLGGQPSVLGMSTRLVAKGLAPS------------------------NRVDGGGAGAATPAGDGDSMMTEELYRVALADLAYVHLGLDDPVSALTYAGRLLETNPSAVSTHLAHLYAAEALCLLGRPAEALEHLSPISENGCSA 419
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: D7FLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM7_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.420e-44 Identity = 106/153 (69.28%), Postives = 120/153 (78.43%), Query Frame = 1
Query: 1 GAKKAAAEGAAGLLGGQPSVLGLSQRLVAKGLAPNASQANSXXXXXXXXXXXXXXXXXXXXXXXXXXGAARIGDRLVGEELFQVALADLAYVHLGLNDPVSALTFAGRLLDAKPSAVNAHLAHLYAAEALCLLGRPAEALQHLAPVSENGCSA 459
G KKAAA GAAGLLGGQPSVLG+S RLVAKGLAP+ + XXXXXXXXXXX A GD ++ EEL++VALADLAYVHLGL+DPVSALT+AGRLL+ PSAV+ HLAHLYAAEALCLLGRPAEAL+HL+P+SEN CSA
Sbjct: 656 GVKKAAAAGAAGLLGGQPSVLGMSTRLVAKGLAPSNNAEGGHXXXXXXXXXXXAATP------------AGDGDSVMAEELYRVALADLAYVHLGLDDPVSALTYAGRLLETNPSAVSTHLAHLYAAEALCLLGRPAEALEHLSPISENACSA 796
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: A0A836CBQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ7_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.250e-8 Identity = 46/100 (46.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 205 AARIGDRLVGEELFQVALADLAYVHLGLNDPVSALTFAGRLLDAKPS--------------AVNAHLAHLYAAEALCLLGRPAEALQHLAPVSENGCSAA 462
AA DR E + Q AL LAYVHLGL+DPV AL +A RLL S A +A LA +Y+AEAL LL RP AL+ L P E +AA
Sbjct: 680 AAAAWDR---EPVCQAALLCLAYVHLGLDDPVQALAYAQRLLGGADSGGXXXXXXXXXXLAATHAVLARMYSAEALMLLDRPNAALEQLQPAEEQLSTAA 776
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: UPI00125DE581 (CCR4-NOT transcription complex subunit 10-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125DE581) HSP 1 Score: 61.2 bits (147), Expect = 1.300e-7 Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 223 RLVGEELFQVALADLAYVHLGLNDPVSALTFAGRLLDA-KPSAVNAHLAHLYAAEALCLLGRPAEALQHLAPVSENG 450
R + L Q LADLAYVHL L DP+ AL+ A LL + S + L ++YAAEALCLL RP EA +HL+ G
Sbjct: 665 RKENQMLEQALLADLAYVHLELGDPLRALSTARSLLKLIECSKIYTFLGNVYAAEALCLLSRPKEAAEHLSMYLSGG 741
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: UPI0010A40499 (CCR4-NOT transcription complex subunit 10-like isoform X1 n=5 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A40499) HSP 1 Score: 61.2 bits (147), Expect = 1.300e-7 Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 247 QVALADLAYVHLGLNDPVSALTFAGRLLDAKP-SAVNAHLAHLYAAEALCLLGRPAEALQHL 429
QVALA+LAYV L L++PV AL+ A LL+ S + L H+Y+AEALCLL RP EA +HL
Sbjct: 672 QVALANLAYVELELDNPVKALSVATSLLELPECSRIYLFLGHVYSAEALCLLNRPKEAAEHL 733
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: A0A7C9EWQ1_OPUST (Uncharacterized protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EWQ1_OPUST) HSP 1 Score: 59.7 bits (143), Expect = 3.890e-7 Identity = 38/70 (54.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 223 RLVGEELFQVALADLAYVHLGLNDPVSALTFAGRLLDAKP-SAVNAHLAHLYAAEALCLLGRPAEALQHL 429
R E+L Q L DLAYV L L +P+ AL+ A L S + A LAHLYAAEALCLL RP EA +HL
Sbjct: 297 RRENEKLKQTILIDLAYVELELGNPLKALSAALSLQKLPECSRMYAFLAHLYAAEALCLLNRPKEAAEHL 366
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: L8HDZ7_ACACA (Tetratricopeptide repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDZ7_ACACA) HSP 1 Score: 59.3 bits (142), Expect = 5.860e-7 Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 250 VALADLAYVHLGLNDPVSALTFAGRLLD--------------AKPSAV---NAH--LAHLYAAEALCLLGRPAEALQHLAP 435
V L +AY+ L L DPV AL AG L+ A P+A + H LAHLYAAEALC+L RPAEA+QHL+P
Sbjct: 559 VCLLSMAYIALALEDPVVALAAAGAALNVGARSTASAPNGTAASPTAAVIDDEHRLLAHLYAAEALCMLNRPAEAMQHLSP 639
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: A0A7N1A7J1_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N1A7J1_KALFE) HSP 1 Score: 58.5 bits (140), Expect = 1.030e-6 Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 247 QVALADLAYVHLGLNDPVSALTFAGRLLDAKPSA-VNAHLAHLYAAEALCLLGRPAEALQHL 429
Q DLAYV L L +PV AL+ A LL+ A + L H+YAAEALCLLGRP EA +H+
Sbjct: 436 QTLFGDLAYVELELGNPVKALSAAKSLLEIPNCAKIYVFLGHVYAAEALCLLGRPKEAAEHM 497
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: A0A1J3J284_NOCCA (CCR4-NOT transcription complex subunit 10 n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A1J3J284_NOCCA) HSP 1 Score: 58.2 bits (139), Expect = 1.450e-6 Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 247 QVALADLAYVHLGLNDPVSALTFAGRLLDAKP-SAVNAHLAHLYAAEALCLLGRPAEALQHL 429
Q LA++AYV L L +P+ AL+ A LL S + L H+YAAEALCLL RP EA+ HL
Sbjct: 597 QALLANMAYVELELENPIKALSAANSLLQVPDCSKIYVFLGHIYAAEALCLLNRPVEAVTHL 658
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Match: A0A1S3Y793_TOBAC (CCR4-NOT transcription complex subunit 10-like n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Y793_TOBAC) HSP 1 Score: 57.8 bits (138), Expect = 2.000e-6 Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 247 QVALADLAYVHLGLNDPVSALTFAGRLLDAKP-SAVNAHLAHLYAAEALCLLGRPAEALQHL 429
Q LADLA+V L L +P+ ALT A LL + S + L ++YAAEALCLL RP EA++HL
Sbjct: 666 QAVLADLAFVELELGNPLRALTIAKSLLKVQECSKIYIFLGNVYAAEALCLLNRPKEAVEHL 727 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12187.1880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12187.1880.1 >prot_H-canaliculatus_F_contig12187.1880.1 ID=prot_H-canaliculatus_F_contig12187.1880.1|Name=mRNA_H-canaliculatus_F_contig12187.1880.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=190bp GAKKAAAEGAAGLLGGQPSVLGLSQRLVAKGLAPNASQANSSSSSSNNSGback to top mRNA from alignment at H-canaliculatus_F_contig12187:1009..2841+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12187.1880.1 ID=mRNA_H-canaliculatus_F_contig12187.1880.1|Name=mRNA_H-canaliculatus_F_contig12187.1880.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1833bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12187:1009..2841+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12187:1009..2841+ >mRNA_H-canaliculatus_F_contig12187.1880.1 ID=mRNA_H-canaliculatus_F_contig12187.1880.1|Name=mRNA_H-canaliculatus_F_contig12187.1880.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1140bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12187:1009..2841+ (Hapterophycus canaliculatus Oshoro5f female)back to top |