prot_H-canaliculatus_F_contig12170.1873.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12170.1873.1
Unique Nameprot_H-canaliculatus_F_contig12170.1873.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length218
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12170.1873.1 vs. uniprot
Match: D7G3W7_ECTSI (Vps54_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.990e-59
Identity = 109/142 (76.76%), Postives = 123/142 (86.62%), Query Frame = 0 
Query:    1 QISNGRRWLQRSLTRRTGPVLQIVRNDRRRHRLRLVQAVTASCLEAAAAEEKVEGELAAGRFTQAVATAELLSETVSADERLSSLAVLGGVRERARSILPAVRKRAELAVSELCRTFSPEGYGGIVEAFLMLEDRGALGPLP 142
            QISNGRR LQRSL R TGPVL+++   RRR RLRLV+AVTASCL+A A E +VEG+LAAGRFTQAVATAELL+ETV+ DE+LSS AVLGGVRERA +IL  V+ RAELAVSELC+TFSPE YGGIVEAFL+LEDRGAL P P
Sbjct:   93 QISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVAGDEQLSSAAVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVEAFLLLEDRGALRPPP 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12170.1873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3W7_ECTSI1.990e-5976.76Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019515Vacuolar protein sorting-associated protein 54, N-terminalPFAMPF10475Vps54_Ncoord: 2..135
e-value: 1.1E-6
score: 28.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12170contigH-canaliculatus_F_contig12170:1498..3628 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12170.1873.1mRNA_H-canaliculatus_F_contig12170.1873.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12170 1498..3628 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12170.1873.1 ID=prot_H-canaliculatus_F_contig12170.1873.1|Name=mRNA_H-canaliculatus_F_contig12170.1873.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp
QISNGRRWLQRSLTRRTGPVLQIVRNDRRRHRLRLVQAVTASCLEAAAAE
EKVEGELAAGRFTQAVATAELLSETVSADERLSSLAVLGGVRERARSILP
AVRKRAELAVSELCRTFSPEGYGGIVEAFLMLEDRGALGPLPPPPAPPPP
PHSTAGATGSVHGGGAGEVADAGSGDAAATAAAGGAAAAGEGGRIEGTDD
EAPRRQQRWISEVRGGHD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019515VPS54_N