mRNA_H-canaliculatus_F_contig12169.1870.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12169.1870.1
Unique NamemRNA_H-canaliculatus_F_contig12169.1870.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: D7FV94_ECTSI (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV94_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 5.580e-146
Identity = 239/310 (77.10%), Postives = 259/310 (83.55%), Query Frame = 1
Query:    1 PAHALAFTRDGRRLVIAAASGDIRIVDLDPHVGD--GTPHDAAAGRARAGAGARLVHCFEEHVDGVQPGGGGIDEGALPVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTASSPSAS-----------RAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRLAACHDGVEFPQVPSGKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMTPRRKIPSNVCVKPIKAKRPRLAEAGEKDKGQ--KSGGKRTANQSNFRMIRDFSSVVLMDFLSRNELLVLENPWESVRESLPGVLDRKQYGV 885
            PAHALAFTRDGRRLV+AAA+GDIRIVDLD    D    P  + A   RAGAGARLVHCFEEHVDGV+PGGG  DEGALPVSAI LSA+GKWLVS SVSGVVYVFDL  LRHHWTA S SAS           R +G+RFH+RDDILVCVDSSNAFRLLDVQ+RRLAACHDGVEFPQ+PSGKG+WGG+G V P+ GIAFNPEDP H MLLFNHRSVVLMTPRRKIP NVCVKP KAK+PRLAE G++DK +  K+ GK  ANQSNFRMIRDFSSVVLMDFL  NELLVLENPWE+V+ESLP VLDRKQYGV
Sbjct:  517 PAHALAFTRDGRRLVVAAAAGDIRIVDLDAAEEDKGSDPDISKATAGRAGAGARLVHCFEEHVDGVRPGGG--DEGALPVSAITLSANGKWLVSCSVSGVVYVFDLVGLRHHWTAPSFSASQRVAGLTSWSPRVLGVRFHSRDDILVCVDSSNAFRLLDVQRRRLAACHDGVEFPQLPSGKGSWGGQGDVRPLSGIAFNPEDPQHCMLLFNHRSVVLMTPRRKIPLNVCVKPTKAKKPRLAE-GDRDKAKTGKASGKGAANQSNFRMIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYGV 823          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A4P9WER0_9FUNG (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WER0_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 8.440e-10
Identity = 62/175 (35.43%), Postives = 81/175 (46.29%), Query Frame = 1
Query:    4 AHALAFTRDGRRLVIAAASGDIRIVDLDPHVGDGTPHDAA-----AGRARAGAGARLVHCFEEHVD--------GVQPGGGGIDE--------GALPVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTA---SSPSASRAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRL 456
            AHALAFT D  RL++A     + +VDL       TP  +      A R +  A AR+V    E VD        G    G GI E        G   V ++A+SA G WL S    G ++VF+LD L+HH T     SP  S    L FH +   LV   +SN F + D ++R L
Sbjct:  500 AHALAFTPDSLRLIVAGIDSTVTVVDLS------TPTFSVEKRFTAHRGQGDARARIVDPDGEDVDLMDVDGFEGADANGEGISEVRGSRGAEGPEMVCSLAVSADGMWLASGDRIGRIFVFNLDSLKHHATLPRFDSPHTS----LSFHAKTPTLVVTCTSNEFFMYDCERRDL 664          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A7S2JXB7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXB7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.970e-9
Identity = 81/326 (24.85%), Postives = 136/326 (41.72%), Query Frame = 1
Query:    1 PAHALAFTRDGRRLVIAAASGDIRIVDLDPHVGDGTPHDAAAGRARAGAGARLVHC---FEEHVDGVQPGGGGIDEGALPVSAIALSASGKWLVSAS---VSGVVYVFDLD------RLRHHWTASSPSASRAVGLRFHNRDDI---LVCVDSSNAFRLLDVQKRRLAACHDGVEFPQVPSGKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMTPRRKIPSNVCVKP---IKAKRPRLAEAGEKDKGQKSGGKRTANQS-------------NFRMIRDFSSVVLMDFLSRNELLVLENPWESVRESLPGVLDRKQYGV 885
            P   L F+ DG  L      G I I+ L P   D           ++  G R+V     F EHV           + ALP++ +A+S   +WLV+ S     G ++VF L+      +   HW       S    L F   + +   L    S N+F L DV++R L+     +  P +             P    +  NP +P    LL +H +  ++   RKIP +    P   +++KR  L +     K   +  KR+ + S             NF +   +++++ ++F+ +NE++V+E PW  + ++LP  L  K YG+
Sbjct:  102 PCSCLHFSPDGTTLACGTLDGPIIILSL-PETSD-----------KSVQGNRMVEVKRIFTEHV-----------QHALPMTHMAISHDSQWLVAGSNDHFKGAIHVFALENNEDQSKSYSHWWPLPQLESPHSCLSFIGGESVESALAVACSDNSFYLFDVKERSLSEWSQDIGIPFLRKMPQEIATIPDYP--VRLVSNPAEP-SKFLLGSHGNFFVVDLSRKIPQSSNYYPSRDLRSKRTWLEKQTSDAKDWTNKRKRSRSTSCGDNVVKEEPLETNFTICLRYNAMLFLEFIGKNEMIVVEQPWAPIFDALPDPLVSKTYGL 401          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A397TJ78_9GLOM (WD40-repeat-containing domain protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TJ78_9GLOM)

HSP 1 Score: 70.1 bits (170), Expect = 5.280e-9
Identity = 69/312 (22.12%), Postives = 135/312 (43.27%), Query Frame = 1
Query:    4 AHALAFTRDGRRLVIAAASGDIRIVDLDPHVGDGTPHDAAAGRARAGAGARLVHCFEEHVDGVQPGGGGIDEGALPVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTASS-PSASRAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRLA--ACHDGVEFPQV--------------PSGKGA--WGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMTPRRKIPSNVCVKPIKAKRPRLAEAGEKDKGQKSGGKRTANQSNFRMIRDFSSVVLMDFLSRNELLVLENPWESVRESLPGVLDRKQYG 882
            A+ L F  DG +LV+   + +I +  L+    D                  ++  F+E+           +    P++++ +S  GKWL +  +   + V++L+ L+HH T +  PS      L FH    ILV   +SN F + D+Q+++L   +     + PQ               PS +    WG       +C + FN +  +      N   + ++   ++    +  KPI+      +E GEK +      K   +  NF+++  + +++ ++F+  N+L+V+E  + S+ E+LP    + +YG
Sbjct:  479 ANLLGFIPDGSKLVVVFMNSEIVVFGLEVDEDDDVD-------------ITVLERFDEYSK---------NSDCEPLTSLTISEDGKWLATGDLLNRILVYNLETLKHHMTINQFPSIH--TSLTFHPSKPILVITLTSNQFYIFDLQQKKLTDWSLKYSEKLPQNFLNLKDKIMGCSFNPSSESMIIWGANY----LCLVDFNNKCRIKEDNDNNEELICMVCSGQQSKPKILKKPIQQ-----SEGGEKYE------KINTDMINFQLVNRYQTLMYLNFIEHNQLVVVERSFSSILENLPPSFYKAKYG 751          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A803NB45_CHEQI (Uncharacterized protein n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB45_CHEQI)

HSP 1 Score: 68.9 bits (167), Expect = 1.290e-8
Identity = 73/301 (24.25%), Postives = 127/301 (42.19%), Query Frame = 1
Query:    4 AHALAFTRDGRRLVIAAASGDIRIVDLDPHVGDGTPHDAAAGRARAGAGARLVHCF-------EEHVDGVQPGGGGIDEGALPVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTASS-PSASRAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRLAACHDGVEFPQVPSGKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMTPRRKIPSNVCVKPIKAKRPRLAEAGEKDKGQKSGG-KRTANQS----------NFRMIRDFSSVVLMDFLSRNELLVLENPWESVRES 849
            AHALAFT D  RL++A +   I +VDL                        L+H F       +EH    +P          P++ +  S+ G+WL + +  G +YVF+++  R HW  S    AS   G    + +++LV   SSN     DV+ ++L        F  +P     + GE     + GI+F P   L S+++++ R++ L+     +  +     +K +     +   K     +G  KR   Q           NF  ++    V+ +  +S++ ++V+E PW  V +S
Sbjct:  541 AHALAFTSDSSRLIVAGSDRRIYVVDLGS--------------------TELLHVFTPYRKTQDEHSPPSEP----------PITKLFTSSDGQWLAAVNCFGDIYVFNMEIQRQHWFISRLDGASVTAGGFSPHSNNVLVITTSSNQVYAFDVEAKQLGEWSRKNSFT-LPQRFQEFPGE-----VIGISFPPSASLSSIVVYSSRAMCLIDFGMPVERDDSSDLVKTEMLNGLDTVSKKLLNSTGRLKRKLQQPDMYIKLYGRRNFEFVQFKHPVLFVGHVSKSSVIVVEKPWLEVVKS 805          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A8H5LT05_9AGAR (Uncharacterized protein n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5LT05_9AGAR)

HSP 1 Score: 68.2 bits (165), Expect = 2.260e-8
Identity = 59/219 (26.94%), Postives = 100/219 (45.66%), Query Frame = 1
Query:  241 IALSASGKWLVSASVSGVVYVFDLDRLRHHWTASSPSASRAVGLRFH-NRDDILVCVDSSNAFRLLDVQKRRLAACHDGV--EFPQ-VPSGKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMTPRRKIPSNVCVKPIKAKRPR-LAEAGEKDKGQKSGGKRTANQSNFRMIRDFSSVVLMDFLSRNELLVLENPWESVRESLPGVLDRKQYG 882
            +A+SA G+WL ++      ++F+LD L+HH    S  A     L F  +R ++L+    +N  ++ DV+ R+    H  +    P+ +   K          P+ G+ F PE P H++   +     L        SN  V     KR R    A  K      G + + +   F+MI  +  ++L+DFLS+ E++V+E P   V  +LP    + +YG
Sbjct:  641 LAISADGQWLATSDEHCRTHIFNLDSLQHHCVLPS-FALPVQSLVFDPSRPNVLILTFQNNTLQIYDVESRQFPTWHKELCDNLPKNLTQAK---------EPILGVTFQPESPGHAIFWGSTWLCKLNVQG----SNFMVSGSSKKRRRDSVHANAKATAPTLGQEESLSSKEFKMITQYRPLLLVDFLSQGEMVVVERPLVDVLATLPPAYFKHKYG 845          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A5C7H747_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H747_9ROSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.900e-8
Identity = 75/317 (23.66%), Postives = 131/317 (41.32%), Query Frame = 1
Query:    4 AHALAFTRDGRRLVIAAASGDIRIVDLDPHVGDGTPHDAAAGRARAGAGARLVH----CFEEHVDGVQPGGGGIDEGALPVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTASS-PSASRAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRLAACHDGVEFPQVPSGKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLM-------------------TPRRKIPSNVCVKPIKAKRPRLAEAGEKDKGQKSGGKRTANQSNFRMIRDFSSVVLMDFLSRNELLVLENPWESVRESLPGVLDRKQYG 882
            AHA+ F+ D  RL+IA     I +VD+                      ++L+H    C EE  + + P          P++ +  S+ G+WL + +  G VY+F+L+  R HW  S    AS A G    +  ++L+   SSN     DV+ R+L        F  +P+    + GE     + G++F P     S+++++ R++ L+                   +  RK+ S+     +K KR        K   +K          NF        V+ +  LS+N +L+++ PW  V ++L   + R  +G
Sbjct:  553 AHAMVFSHDCSRLMIAGHDRRIYVVDVGS--------------------SKLLHTFTPCREERDEELPPS-------EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVAAGGFPPHNSNVLIVTTSSNQVYAFDVEARQLGEWSMRHTFV-LPTRYQEFPGE-----VIGLSFLPSPSSSSVIIYSARAMCLIDFGMPVDRDDESDLVNGQGSTFRKLTSSPMNGKLKRKRIDCQTEAAKLNSRK----------NFEFFAFRDPVLFIGHLSKNSVLIMDKPWIEVVKTLGAPVHRHIFG 826          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A015LDH8_RHIIW (Utp4p n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A015LDH8_RHIIW)

HSP 1 Score: 65.9 bits (159), Expect = 1.140e-7
Identity = 52/227 (22.91%), Postives = 113/227 (49.78%), Query Frame = 1
Query:  229 PVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTASSPSASRAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRLAACHDGVEFPQVPSGKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMTPRR-KIPSN-------VCVKPI-KAKRPRLAEAGEKDKGQKSGGKRTANQSNFRMIRDFSSVVLMDFLSRNELLVLENPWESVRESLPGVLDRKQYG 882
            P++++ +S  GKWL +  +   +YV++L+ L+HH T +  S+     L F+  + ILV   +SN F L D+Q+++L       ++    S K           + G +FNP     SM+++    + L+   + KI          +C +   +  +P+  +  +  + ++   K   +  +F+++  + +++ ++F+  N+L+V+E  + S+ E+LP    + +YG
Sbjct:  538 PLTSLTISEDGKWLATGDLLNQIYVYNLETLKHHMTINQFSSIH-TSLTFNPFEPILVITLTSNQFYLFDLQQKKL------TDWSLKYSEKLPQNFLNLKDKIMGCSFNPSSD--SMIVWGANYLCLIDFNKCKIKEGTGNNNELICARCSGQQSKPKFLKKQQSGEQEQKYEKIYTDTISFQLVNRYQTLMYLNFIKHNQLVVVERSFSSILENLPPSFYKAKYG 755          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A0K9RHN3_SPIOL (Uncharacterized protein n=3 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RHN3_SPIOL)

HSP 1 Score: 65.1 bits (157), Expect = 2.100e-7
Identity = 72/303 (23.76%), Postives = 131/303 (43.23%), Query Frame = 1
Query:    4 AHALAFTRDGRRLVIAAASGDIRIVDLDPHVGDGTPHDAAAGRARAGAGARLVHCF-------EEHVDGVQPGGGGIDEGALPVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTASS-PSASRAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRLA--ACHDGVEFPQVPSGKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMT---PRRKIPSNVCVKP-----IKAKRPRLAEAGEKDKG---QKSGGKRTANQSNFRMIRDFSSVVLMDFLSRNELLVLENPWESVRES 849
            AHA+ FT D  RL++A +   I +VDL                        ++H F       +E+    +P          P++ +  S+ G+WL + +  G +YVF+++  R HW  S    AS   G      +++LV   SSN     DV+ ++L   +  + +  PQ       + GE     + GI+F P   L S+++++ R++ L+    P  +  SN  V       +++   +L  +  K K    Q     +   + NF  ++    V+ +  +S++ ++VLE PW  V +S
Sbjct:  583 AHAMVFTSDSSRLIVAGSDRRIYVVDLGS--------------------TEMLHVFTPYRKTQDEYSPPSEP----------PITKLFTSSDGQWLAAVNCFGDIYVFNMELQRQHWFISRLDGASVTAGGFSPQSNNVLVITTSSNQVYAFDVEAKQLGEWSRKNSLALPQRFQ---EFPGE-----VIGISFPPSASLSSIIVYSSRAMCLIDFGKPVERDDSNDFVTTDMLNGLESVSKKLLNSNGKLKRKLQQPDMYMKLYGRKNFEFVQFKHPVLFVGHVSKSSVIVLEKPWLEVVKS 847          
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Match: A0A397UBV8_9GLOM (WD40-repeat-containing domain protein n=3 Tax=Gigaspora TaxID=4873 RepID=A0A397UBV8_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-6
Identity = 80/320 (25.00%), Postives = 132/320 (41.25%), Query Frame = 1
Query:    4 AHALAFTRDGRRLVIAAASGDIRIVDLDPHVGDGTPHDAAAGRARAGAGARLVHCFEEHVDGVQPGGGGIDEGALPVSAIALSASGKWLVSASVSGVVYVFDLDRLRHHWTASSPSASRAVGLRFHNRDDILVCVDSSNAFRLLDVQKRRLAACHDGVEFPQVPS-GKGAWGGEGHVPPMCGIAFNPEDPLHSMLLFNHRSVVLMTPRRKIPSNVCVKPIKAKRPRLA--------------EAGEKDKGQKSGGKRTANQSN------------FRMIRDFSSVVLMDFLSRNELLVLENPWESVRESLPGVLDRKQYG 882
            AH L FT DG++LVI      I I +LD +      H             +++H F EH    QP    +D     +++IA+S   +WL    +   + V++L+  + H T    S++    L F+     LV   SSN F L D++ ++L    D        S  K     E  +    G  FNP +   +++L+    + L      I  + C K  K  +P LA              E   K  G     KR   + N            F+++  + S++ +DF+  N ++V+E P+ ++ E+LP    + QYG
Sbjct:  481 AHHLMFTLDGKKLVIVNIDSSIIITELDDN-----QHKEI----------KILHQFYEHA---QP----LDGNTSVITSIAVSGDSRWLAVGDLLNRINVYNLETFKLHSTLPKFSSTN-TSLAFYPSKPTLVITLSSNEFFLYDIESQKL----DDWSLTYSKSLPKTFLNLENRL---VGCTFNPINS-DAIILWGANYLCL------IDFDKCRKE-KGHQPHLATCTGWRENSKYKAIEQAPKQNGLTKKRKRDKTEKNIXXXXTDKKIINFQLVFRYRSLMCVDFIEPNTMIVVERPFAAILENLPPSFYKAQYG 762          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12169.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FV94_ECTSI5.580e-14677.10ANAPC4_WD40 domain-containing protein n=2 Tax=Ecto... [more]
A0A4P9WER0_9FUNG8.440e-1035.43Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A7S2JXB7_9STRA4.970e-924.85Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A397TJ78_9GLOM5.280e-922.12WD40-repeat-containing domain protein n=1 Tax=Glom... [more]
A0A803NB45_CHEQI1.290e-824.25Uncharacterized protein n=4 Tax=Chenopodium quinoa... [more]
A0A8H5LT05_9AGAR2.260e-826.94Uncharacterized protein n=1 Tax=Tetrapyrgos nigrip... [more]
A0A5C7H747_9ROSI3.900e-823.66Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A015LDH8_RHIIW1.140e-722.91Utp4p n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A... [more]
A0A0K9RHN3_SPIOL2.100e-723.76Uncharacterized protein n=3 Tax=Spinacia oleracea ... [more]
A0A397UBV8_9GLOM1.060e-625.00WD40-repeat-containing domain protein n=3 Tax=Giga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12169contigH-canaliculatus_F_contig12169:256..3571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.7e-44
Seed eggNOG ortholog2880.D7FV94
Preferred nameCIRH1A
KEGG koko:K06171,ko:K14548
KEGG Pathwayko03008,ko04330,ko05010,map03008,map04330,map05010
KEGG ModuleM00682
GOsGO:0000003,GO:0000462,GO:0001650,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010051,GO:0010073,GO:0010101,GO:0010102,GO:0010154,GO:0010305,GO:0010311,GO:0010449,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010817,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022414,GO:0022613,GO:0022622,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0035266,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048518,GO:0048522,GO:0048527,GO:0048528,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1990904,GO:2000012,GO:2000112,GO:2001141
EggNOG free text desc.maturation of SSU-rRNA
EggNOG OGsKOG2048@1,KOG2048@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size1488
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12169.1870.1prot_H-canaliculatus_F_contig12169.1870.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12169 856..2471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.7298324-UTR-H-canaliculatus_F_contig12169:255..8551622928929.7298324-UTR-H-canaliculatus_F_contig12169:255..855Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12169 256..855 -
1696845616.552805-UTR-H-canaliculatus_F_contig12169:255..8551696845616.552805-UTR-H-canaliculatus_F_contig12169:255..855Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12169 256..855 -
1622928929.7766938-UTR-H-canaliculatus_F_contig12169:2471..26641622928929.7766938-UTR-H-canaliculatus_F_contig12169:2471..2664Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12169 2472..2664 -
1696845616.5865266-UTR-H-canaliculatus_F_contig12169:2471..26641696845616.5865266-UTR-H-canaliculatus_F_contig12169:2471..2664Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12169 2472..2664 -
1622928929.7883606-UTR-H-canaliculatus_F_contig12169:3227..35711622928929.7883606-UTR-H-canaliculatus_F_contig12169:3227..3571Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12169 3228..3571 -
1696845616.594201-UTR-H-canaliculatus_F_contig12169:3227..35711696845616.594201-UTR-H-canaliculatus_F_contig12169:3227..3571Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12169 3228..3571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.7419696-CDS-H-canaliculatus_F_contig12169:855..10001622928929.7419696-CDS-H-canaliculatus_F_contig12169:855..1000Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12169 856..1000 -
1696845616.5630305-CDS-H-canaliculatus_F_contig12169:855..10001696845616.5630305-CDS-H-canaliculatus_F_contig12169:855..1000Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12169 856..1000 -
1622928929.752509-CDS-H-canaliculatus_F_contig12169:1494..16381622928929.752509-CDS-H-canaliculatus_F_contig12169:1494..1638Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12169 1495..1638 -
1696845616.571132-CDS-H-canaliculatus_F_contig12169:1494..16381696845616.571132-CDS-H-canaliculatus_F_contig12169:1494..1638Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12169 1495..1638 -
1622928929.766303-CDS-H-canaliculatus_F_contig12169:2409..24711622928929.766303-CDS-H-canaliculatus_F_contig12169:2409..2471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12169 2410..2471 -
1696845616.5788817-CDS-H-canaliculatus_F_contig12169:2409..24711696845616.5788817-CDS-H-canaliculatus_F_contig12169:2409..2471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12169 2410..2471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12169.1870.1

>prot_H-canaliculatus_F_contig12169.1870.1 ID=prot_H-canaliculatus_F_contig12169.1870.1|Name=mRNA_H-canaliculatus_F_contig12169.1870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MCGIAFNPEDPLHSMLLFNHRSVVLMTPRRKIPSNVCVKPIKAKRPRLAE
AGEKDKGQKSGGKRTANQSNFRMIRDFSSVVLMDFLSRNELLVLENPWES
VRESLPGVLDRKQYGV*
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mRNA from alignment at H-canaliculatus_F_contig12169:256..3571-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12169.1870.1 ID=mRNA_H-canaliculatus_F_contig12169.1870.1|Name=mRNA_H-canaliculatus_F_contig12169.1870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3316bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12169:256..3571- (Hapterophycus canaliculatus Oshoro5f female)
CCCGCCCACGCTCTAGCCTTTACACGCGATGGGCGTAGACTCGTGATAGC GGCGGCGTCCGGAGATATCCGCATCGTCGATCTAGATCCACACGTCGGAG ACGGTACACCCCACGACGCTGCTGCGGGACGAGCCAGAGCTGGGGCTGGC GCTCGCCTGGTGCACTGCTTCGAGGAGCACGTGGATGGGGTTCAACCGGG GGGGGGGGGTATTGACGAGGGGGCCTTGCCGGTATCCGCGATCGCGCTGA GCGCCAGCGGGAAGTGGCTTGTTTCGGCTTCCGTGTCCGGTGTGGTTTAC GTGTTCGACCTCGACAGGCTACGGCATCACTGGACCGCCTCCAGGTAATT CACACACGACAGTTTTTTTTTTTCATACCACGCCGGACACCACGCCGGCC TTGTGTCCGAGGAAAGTGATTCGTGTCCGCGGGGTCTGCGTCTGATGTCG CCGCGTGAGCTGAGGTCGGGCCGTTTTTTTTTGACTTGGAAGGATCACAG CGCTGTACTTCGTCCAGCTTGGGAACTGAACGGTTGTCGTATTTTCCGTC TGATAGAACAAGGCCTCAAGCTTCCCCTCTGTGGCCGCACTTTGGCTACG GCTCCCTGCTTTGTTTGCTGTCCGGACTGGTAAATGCTACGTGGCGTTCA CGCTAGAGGCGTGAGCGCATGCACCCTCCCTCCCTCCGATCGCGTCACAA GGGTCCAACTCGTTCGCGCCTTCAAGGAATGCTTCCGAGCAACCTCACGA ACACAGCTTCAACCTGATACACATATTTACATCTAAACATGGTAGCCTCG CAAAACGAACGACATCTCTGATATTTCCGACGACCCCCCTCACCACCACT CCCACTGCGTCAATCGCGTTGCAACTGTACCGTGCTGTTTGGTGCCAACG CCTGCAGTCCCTCAGCAAGCAGGGCGGTGGGCTTGCGGTTCCACAACCGC GATGACATCCTGGTGTGCGTAGACTCTTCCAATGCTTTCCGCTTGCTGGA CGTGCAGAAGCGCCGCTTGGCGGCCTGCCACGACGGCGTGGAGTTCCCAC AGGTGCCGTCGGGGAAGGGTGCCTGGGGGGGGGAAGGGCACGTGCCCCCC ATGTGCGGGATTGCCTTCAACCCTGAAGACCCGCTACACTCCATGCTGCT CTTCAACCACAGGTACGTGCTTGCAAACACAACCCAAGATACATACTTAG ATGTTCTCATGCACGTTTTCGTGATCTGGGGGCCTGTGATCGGAAGAACC AGTACAAGTATTTGGTTGGACAAGACCGGTAGGTGTCATTCTCTTTTTTT TCGTGGTCGTCGTGGATCGAGGCGCTCAAGGTGTGTGGTCGCGTATTAAA CCGCGTCTTCCAGCGTAATCTCTGCGTATATTTCGTGACTTCCACGAATA GATGCACCTGAACTCACTGTTTGCCGTCTTTTCGGCGTTTGCTGGCGTCG TTGTGACGACTGCCATCCATGATGGCACGCGATTGCTGCTCATATTGCAG GCACCTCCGACCCCCGAGCCTGCAACTCGTTGTCTCTGCCAACGACGGCA TGCTTTATCCAATACACGTAGACGCATGTAGAAATGATTAGCGCTGGATT CTACGTACACTGCAATCGTTCATAATATGTACAGTATAAATACCATGCTT GTACCATACCTCAATAATGAACTCAGGAGCATGAGCAAGCGCCCCCCCTC TGCTTGTACTCGACGTCGTAGCAATCATACCAACAGCTGCAACAGCAAAT ACGGAGGACTGATAGATCGCCTGCAGACCTGGCTAGACCAGTCCACGGTC TACAGCGTTTCCTCTGTGAAGTACCAGTCTGCTATCTATCTGCAAAGCGA TAAGCTCTGTTCTACAACATGCCAAGCTATCTTGTGCGCTCTTGTCGGCT GCTCCTCGGTCGTTTTTGTCGTCTATGTTTTAGGTCGGTGGTGTTGATGA CCCCGCGTCGAAAGATCCCCTCAAACGTGTGCGTCAAGCCGATCAAGGCC AAGAGGCCTCGCCTCGCGGAGGCCGGCGAAAAGGACAAGGGTCAAAAGTC TGGGGGCAAGCGTACAGCAAACCAGAGGTCAGCAACCCAGGCATGCGCTT ATTTTTTATCATGTCGCGTGGTATTCGAAGACACAAACATTCAATTTTGT CTGGGGCAGACCCATGATTCCTGCTAGGTTGGTATTGAATTTGCACCGCA ATCGGACGCGTGGGCCGGCGCCGATGAATGGTGTTCCGTTTCGAAGCGTG GGTTGCTGCGCTGCTGATGATCTACAGCAGCCCTTCCGCCGGATGTCTGG ATAGGTGGGGTAGCGCCGAATCTAAAAGTAAAACGCAAGGAACAGAATGC CAAAGCATCTTTCCACGAGAACAAGAGAAGATGACCACACGACAACACAA ATTTGGAACAACCGTAGAGCTTCTTGGTCGTTCACATTTGGCACGGACAC ACGCATGCGCATGCGACATGAGTCGCATGGGTCCCGCTTACCTCGGGCGA TCGTACTCGAACTCACAACCTTTTCGCATTGTGTGCTTGCTGTTATCTGC GTGCAACGTTTGACCCTGCAGCAACTTTCGCATGATCCGGGACTTCTCGT CTGTGGTGCTGATGGACTTCTTGAGTCGAAACGAGCTTCTTGTCTTGGAA AACCCATGGGAGAGTGTGAGGGAATCTTTGCCTGGTGTATTGGATCGCAA GCAGTATGGCGTGTAACCGAGGGTGGAGCACAGGCGATCGAAGACGTTAT TGGTGACTGTCATGGGAGCAAAATGGGAGGTCTGATTGCCGTTTGTGGAC GTCGGATGTTTGCATCGTGGTCTGTTTGCGCAGCTCACGTGGGCGATACT GGAGACATCGGGAGATTCGTACGCCCTGCTGCTTTTTGGGGCGCGCTGTT GTGATCAAAAGGTTGATCTGCACCCCTGCATGTTCGTGCGAAAGCCGATG GAATCCTGTTGAAGAAAAACCAACCCAAGGGTTGTCGCTTGATTCGTTCA TAATGATGCAAAGCTGCAAAGTGTGTTGAAGTTATTGCTTTTAGAAGACA GACCTGCCAATTTATCGTGACCACGGAATAACCTCTCGAGATGGACTTTT TAATGCAGTCTGAAGACAGCAACAAGAACAACGATTTCCGTCGCCTCCGT CTCAATCGGTGTGATTGCTGTAGAGGTATTTCAGTACAAGCACTCGATCT TCGAAGCCAACGTGTGCTTGCCAGAGCCCCGCACCACCTTTCCTTTTTCA TGCCGAGAGCGCTTTCCTGGTTCATGCCGGGAGTGCCTCCTCGGGCCGCA CGACCATGGTCTTACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12169:256..3571-

>mRNA_H-canaliculatus_F_contig12169.1870.1 ID=mRNA_H-canaliculatus_F_contig12169.1870.1|Name=mRNA_H-canaliculatus_F_contig12169.1870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12169:256..3571- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCGGGATTGCCTTCAACCCTGAAGACCCGCTACACTCCATGCTGCT
CTTCAACCACAGATGTGCGGGATTGCCTTCAACCCTGAAGACCCGCTACA
CTCCATGCTGCTCTTCAACCACAGGTCGGTGGTGTTGATGACCCCGCGTC
GAAAGATCCCCTCAAACGTGTGCGTCAAGCCGATCAAGGCCAAGAGGCCT
CGCCTCGCGGAGGCCGGCGAAAAGGACAAGGGTCAAAAGTCTGGGGGCAA
GCGTACAGCAAACCAGAGGTCGGTGGTGTTGATGACCCCGCGTCGAAAGA
TCCCCTCAAACGTGTGCGTCAAGCCGATCAAGGCCAAGAGGCCTCGCCTC
GCGGAGGCCGGCGAAAAGGACAAGGGTCAAAAGTCTGGGGGCAAGCGTAC
AGCAAACCAGAGCAACTTTCGCATGATCCGGGACTTCTCGTCTGTGGTGC
TGATGGACTTCTTGAGTCGAAACGAGCTTCTTGTCTTGGAAAACCCATGG
GAGAGTGTGAGGGAATCTTTGCCTGGTGTATTGGATCGCAAGCAGTATGG
CGTGTAACAACTTTCGCATGATCCGGGACTTCTCGTCTGTGGTGCTGATG
GACTTCTTGAGTCGAAACGAGCTTCTTGTCTTGGAAAACCCATGGGAGAG
TGTGAGGGAATCTTTGCCTGGTGTATTGGATCGCAAGCAGTATGGCGTGT
AA
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