mRNA_H-canaliculatus_F_contig12158.1864.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12158.1864.1
Unique NamemRNA_H-canaliculatus_F_contig12158.1864.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12158.1864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12158contigH-canaliculatus_F_contig12158:3291..3777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.9309132-CDS-H-canaliculatus_F_contig12158:3290..34651622928928.9309132-CDS-H-canaliculatus_F_contig12158:3290..3465Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12158 3291..3465 -
1696845616.1840098-CDS-H-canaliculatus_F_contig12158:3290..34651696845616.1840098-CDS-H-canaliculatus_F_contig12158:3290..3465Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12158 3291..3465 -
1622928928.950292-CDS-H-canaliculatus_F_contig12158:3661..37771622928928.950292-CDS-H-canaliculatus_F_contig12158:3661..3777Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12158 3662..3777 -
1696845616.20415-CDS-H-canaliculatus_F_contig12158:3661..37771696845616.20415-CDS-H-canaliculatus_F_contig12158:3661..3777Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12158 3662..3777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12158.1864.1prot_H-canaliculatus_F_contig12158.1864.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12158 3291..3777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12158.1864.1

>prot_H-canaliculatus_F_contig12158.1864.1 ID=prot_H-canaliculatus_F_contig12158.1864.1|Name=mRNA_H-canaliculatus_F_contig12158.1864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
REESGRENPTVGNTLGLLGYAFAAYAVGGLSSALSTKDEFTWLKARSTAR
AGSSNLTSESTTMSTESGQVLWCDFGTAGLPRLGDISGQCSGMFSTG
back to top

mRNA from alignment at H-canaliculatus_F_contig12158:3291..3777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12158.1864.1 ID=mRNA_H-canaliculatus_F_contig12158.1864.1|Name=mRNA_H-canaliculatus_F_contig12158.1864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=487bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12158:3291..3777- (Hapterophycus canaliculatus Oshoro5f female)
CGGGAGGAGAGTGGGAGAGAGAACCCCACTGTGGGAAACACTCTTGGCTT
GTTGGGGTATGCCTTTGCTGCGTATGCGGTTGGTGGGTTATCTTCTGCCC
TATCGACAAAAGACGAGTGAGTGTGTGGGCACCCTGCCGTGATGTAGGGG
ATTATTGCAGAGCCTGTGGTGCAGTAGATCCGCTGGGATTCCTCAGTGTT
TGGACGAAATCGCTGATGCTCTGGGTAGTGTAGATTCATAACCTACATAT
CTTGATTGAGACGATTGCACTTTGCTTACCAGAAACACATCAGTCCCCCT
CTTTATCGACAGGTTTACATGGCTGAAGGCAAGAAGTACAGCAAGAGCGG
GGTCATCGAATTTGACATCGGAGTCTACGACGATGAGTACTGAATCCGGA
CAAGTTCTCTGGTGCGACTTTGGCACGGCCGGCCTCCCTCGCCTTGGAGA
TATTTCTGGACAATGCTCGGGCATGTTTTCGACAGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12158:3291..3777-

>mRNA_H-canaliculatus_F_contig12158.1864.1 ID=mRNA_H-canaliculatus_F_contig12158.1864.1|Name=mRNA_H-canaliculatus_F_contig12158.1864.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12158:3291..3777- (Hapterophycus canaliculatus Oshoro5f female)
CGGGAGGAGAGTGGGAGAGAGAACCCCACTGTGGGAAACACTCTTGGCTT
GTTGGGGTATGCCTTTGCTGCGTATGCGGTTGGTGGGTTATCTTCTGCCC
TATCGACAAAAGACGACGGGAGGAGAGTGGGAGAGAGAACCCCACTGTGG
GAAACACTCTTGGCTTGTTGGGGTATGCCTTTGCTGCGTATGCGGTTGGT
GGGTTATCTTCTGCCCTATCGACAAAAGACGAGTTTACATGGCTGAAGGC
AAGAAGTACAGCAAGAGCGGGGTCATCGAATTTGACATCGGAGTCTACGA
CGATGAGTACTGAATCCGGACAAGTTCTCTGGTGCGACTTTGGCACGGCC
GGCCTCCCTCGCCTTGGAGATATTTCTGGACAATGCTCGGGCATGTTTTC
GACAGGGGTTTACATGGCTGAAGGCAAGAAGTACAGCAAGAGCGGGGTCA
TCGAATTTGACATCGGAGTCTACGACGATGAGTACTGAATCCGGACAAGT
TCTCTGGTGCGACTTTGGCACGGCCGGCCTCCCTCGCCTTGGAGATATTT
CTGGACAATGCTCGGGCATGTTTTCGACAGGG
back to top