mRNA_H-canaliculatus_F_contig12153.1861.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12153.1861.1
Unique NamemRNA_H-canaliculatus_F_contig12153.1861.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12153.1861.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.000e-21
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = -1 
Query:    1 QHRRMEGSSSHPGGRGGGSGEWDERIHGGGGDQMVETRDVELKNHFPVSMQLLSLAMEDCQDILSVTSVDPSSPSSVALPQAAWE 255
            Q R   GSS  P   GGG+    E+    GGD MVETR VELKNHFPV+MQLLSL+MEDCQDILSV+ VDP+SP+SVALPQA+WE
Sbjct:  690 QGRNNIGSSRPPEQEGGGA----EKQREQGGDWMVETRVVELKNHFPVAMQLLSLSMEDCQDILSVSGVDPTSPASVALPQASWE 770
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BLAST of mRNA_H-canaliculatus_F_contig12153.1861.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 3.100e-9
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -1 
Query:   61 GDQMVETRDVELKNHFPVSMQLLSLAMEDCQDILS 165
            GD MVETR VELKNHFPV+MQLLSL+MEDC+DILS
Sbjct:  585 GDWMVETRVVELKNHFPVAMQLLSLSMEDCRDILS 619
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12153.1861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQA3_9PHAE3.000e-2167.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB05_ECTSI3.100e-985.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12153contigH-canaliculatus_F_contig12153:1405..1743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.7191107-CDS-H-canaliculatus_F_contig12153:1404..17431622928928.7191107-CDS-H-canaliculatus_F_contig12153:1404..1743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 1405..1743 +
1696845616.0895464-CDS-H-canaliculatus_F_contig12153:1404..17431696845616.0895464-CDS-H-canaliculatus_F_contig12153:1404..1743Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12153 1405..1743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12153.1861.1prot_H-canaliculatus_F_contig12153.1861.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12153 1405..1743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12153.1861.1

>prot_H-canaliculatus_F_contig12153.1861.1 ID=prot_H-canaliculatus_F_contig12153.1861.1|Name=mRNA_H-canaliculatus_F_contig12153.1861.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
LPRRLRERHRGRRRRVDGGDAQDVLAVLHGEAQQLHRHGEVILQLHIARL
HHLIAAAAVYPLVPFTGAPTSAPGMGGRALHPAVLAMPTAGGARGLRGAG
SPALLRVLFISIS
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mRNA from alignment at H-canaliculatus_F_contig12153:1405..1743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12153.1861.1 ID=mRNA_H-canaliculatus_F_contig12153.1861.1|Name=mRNA_H-canaliculatus_F_contig12153.1861.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=339bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12153:1405..1743+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCACGCCGCCTGCGGGAGCGCCACCGAGGACGGCGACGACGGGTCGA
CGGAGGTGACGCTCAGGATGTCCTGGCAGTCCTCCATGGCGAGGCTCAGC
AACTGCATCGACACGGGGAAGTGATTCTTCAGCTCCACATCGCGCGTCTC
CACCATCTGATCGCCGCCGCCGCCGTGTATCCGCTCGTCCCATTCACCGG
AGCCCCCACCTCGGCCCCCGGGATGGGAGGAAGAGCCCTCCATCCTGCGG
TGTTGGCGATGCCTACCGCCGGAGGCGCCCGCGGACTGAGGGGTGCCGGG
AGCCCTGCCCTGCTTCGAGTGCTCTTCATCTCCATCTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12153:1405..1743+

>mRNA_H-canaliculatus_F_contig12153.1861.1 ID=mRNA_H-canaliculatus_F_contig12153.1861.1|Name=mRNA_H-canaliculatus_F_contig12153.1861.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12153:1405..1743+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCACGCCGCCTGCGGGAGCGCCACCGAGGACGGCGACGACGGGTCGA
CGGAGGTGACGCTCAGGATGTCCTGGCAGTCCTCCATGGCGAGGCTCAGC
AACTGCATCGACACGGGGAAGTGATTCTTCAGCTCCACATCGCGCGTCTC
CACCATCTGATCGCCGCCGCCGCCGTGTATCCGCTCGTCCCATTCACCGG
AGCCCCCACCTCGGCCCCCGGGATGGGAGGAAGAGCCCTCCATCCTGCGG
TGTTGGCGATGCCTACCGCCGGAGGCGCCCGCGGACTGAGGGGTGCCGGG
AGCCCTGCCCTGCTTCGAGTGCTCTTCATCTCCATCTCCCTCCCACGCCG
CCTGCGGGAGCGCCACCGAGGACGGCGACGACGGGTCGACGGAGGTGACG
CTCAGGATGTCCTGGCAGTCCTCCATGGCGAGGCTCAGCAACTGCATCGA
CACGGGGAAGTGATTCTTCAGCTCCACATCGCGCGTCTCCACCATCTGAT
CGCCGCCGCCGCCGTGTATCCGCTCGTCCCATTCACCGGAGCCCCCACCT
CGGCCCCCGGGATGGGAGGAAGAGCCCTCCATCCTGCGGTGTTGGCGATG
CCTACCGCCGGAGGCGCCCGCGGACTGAGGGGTGCCGGGAGCCCTGCCCT
GCTTCGAGTGCTCTTCATCTCCATCTCC
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