mRNA_H-canaliculatus_F_contig12152.1859.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12152.1859.1
Unique NamemRNA_H-canaliculatus_F_contig12152.1859.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12152.1859.1 vs. uniprot
Match: D7FLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL9_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.200e-24
Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:   70 DREALEAAWRWWVGGWLRRRGQRIRTIELESKRRQERDRDLAEELAQAQREAASLXXXXXXXEAELQRTQILVREQEEALARSRRSLTEAAAXXXXXXXXXGPA 381
            +REAL AAWRWWVGGWLRR+ + IRT E+E++RR +R+RDLAE+L Q Q+E+A+L       E+ELQRT+ILV EQEEAL  SRRSL EA+A         GPA
Sbjct:  805 EREALGAAWRWWVGGWLRRQAEGIRTREVEARRRAKRERDLAEQLEQVQQESAALQKEALAVESELQRTKILVLEQEEALEASRRSLAEASAAATAVKSRLGPA 908
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BLAST of mRNA_H-canaliculatus_F_contig12152.1859.1 vs. uniprot
Match: A0A6H5J7Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.030e-23
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   70 DREALEAAWRWWVGGWLRRRGQRIRTIELESKRRQERDRDLAEELAQAQREAASLXXXXXXXEAELQRTQILVREQEEALARSRRSLTEAAAXXXXXXXXXGPA 381
            +REAL AAWRWWVGGWLRR+ + IRT E+E++RR +RDRDLAE+L Q  +++A+L       E ELQRT+I+V EQEEAL  SRRSL EA+A         GPA
Sbjct:  787 EREALGAAWRWWVGGWLRRQAEGIRTREVEARRRAKRDRDLAEQLEQVHQDSAALQKEAVAVETELQRTKIMVLEQEEALEASRRSLAEASAAAAAVKSRLGPA 890
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12152.1859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLL9_ECTSI1.200e-2459.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7Z0_9PHAE1.030e-2357.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12152contigH-canaliculatus_F_contig12152:378..3029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size465
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12152.1859.1prot_H-canaliculatus_F_contig12152.1859.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12152 380..3029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.5703993-CDS-H-canaliculatus_F_contig12152:379..5371622928928.5703993-CDS-H-canaliculatus_F_contig12152:379..537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 380..537 -
1696845616.0322936-CDS-H-canaliculatus_F_contig12152:379..5371696845616.0322936-CDS-H-canaliculatus_F_contig12152:379..537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 380..537 -
1622928928.58202-CDS-H-canaliculatus_F_contig12152:1614..17081622928928.58202-CDS-H-canaliculatus_F_contig12152:1614..1708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 1615..1708 -
1696845616.0440338-CDS-H-canaliculatus_F_contig12152:1614..17081696845616.0440338-CDS-H-canaliculatus_F_contig12152:1614..1708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 1615..1708 -
1622928928.5925727-CDS-H-canaliculatus_F_contig12152:2569..26361622928928.5925727-CDS-H-canaliculatus_F_contig12152:2569..2636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 2570..2636 -
1696845616.0575616-CDS-H-canaliculatus_F_contig12152:2569..26361696845616.0575616-CDS-H-canaliculatus_F_contig12152:2569..2636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 2570..2636 -
1622928928.6029313-CDS-H-canaliculatus_F_contig12152:2886..30291622928928.6029313-CDS-H-canaliculatus_F_contig12152:2886..3029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 2887..3029 -
1696845616.069675-CDS-H-canaliculatus_F_contig12152:2886..30291696845616.069675-CDS-H-canaliculatus_F_contig12152:2886..3029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12152 2887..3029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12152.1859.1

>prot_H-canaliculatus_F_contig12152.1859.1 ID=prot_H-canaliculatus_F_contig12152.1859.1|Name=mRNA_H-canaliculatus_F_contig12152.1859.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
GAPSAATAIAAAEAAAPAARRRRDREALEAAWRWWVGGWLRRRGQRIRTI
ELESKRRQERDRDLAEELAQAQREAASLQKEAAAVEAELQRTQILVREQE
EALARSRRSLTEAAAAASAVKARLGPAAPSNPSKGRKGAKAAKNGGRVRK
QGRA
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mRNA from alignment at H-canaliculatus_F_contig12152:378..3029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12152.1859.1 ID=mRNA_H-canaliculatus_F_contig12152.1859.1|Name=mRNA_H-canaliculatus_F_contig12152.1859.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2652bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12152:378..3029- (Hapterophycus canaliculatus Oshoro5f female)
GGCGCTCCTTCGGCGGCGACGGCGATAGCGGCGGCGGAGGCGGCGGCACC
GGCGGCGAGGCGGCGCCGGGATCGGGAGGCGTTAGAGGCAGCGTGGAGGT
GGTGGGTGGGCGGCTGGCTGAGGCGTCGGGGGCAGAGGATCAGGTGAAGA
TGTGGGAAGCTGCATTTTTCTTGTGTGTGTGTGGGGGGGGGGGGCTCTTG
GTTTTGGTGGCGACGCTCGTGATGGGTGCAGGTTGTGGTTAGCGTTGTTA
GCGTCGCTCCTGTTGCGGCGTGGCTGTTTTCGATTGCTTCGGTGTGGTCT
CTGCCGCTGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCTCGTTGTGGCGC
TAGCGCTGACTTCCCTTTGCCTCGCTCGCCATTTCACTTCCAGGACGATC
GAGCTGGAATCGAAGCGCCGGCAAGAGCGGGACCGTGACCTTGCCGAAGA
GCTAGCACAGGTGTGTGTGTGCGTGTTTTTTGCCGTGGGTCCAGCATCGA
CCGGGGGAGCAATTTATTTTCGAGGGCCACACCAACACGTTCCGTCTCTC
CTTCTCGTCAGCTGCTAAAGGGCTATAGTTGATTTCCTCCTCCACGTAAG
ACCGAAGCGGGGTTGTTTCGATTCGAGAAGGGGGTGCCGCGGACAAAACT
TAAGGGAAGCTGCCCCCCCCCTCCTCCCCCCCTTCCCCCCTACCGTTCAA
GCGCGAGTCGAATCGTAGTCTCCTTTGGACAATACTGGGGAGTCGAATCG
TAGCCTCTTTTGCTCGAATCGTCGGTAGGGCTTACGCCTTTGGCGGTAGA
CGGTTCAAATCGTGCTGGAGCCCACAGAAGAAAGTTTGTGGCTCTGAGGC
AGGGATGTTTTGACAGTCCCGCCGCCGCGCGGCACGCGCGTCCGTCGTAC
GCTTCGTGCGACCTAGCCCTAACCAGCGCCCATCAACCTAGGACTAGCCA
ACTACAGCAACCTGGGACTGAGCCAACGTACAGCGACATAGCTACTGGTC
GTGGTTGGGGTTCGGGTGAAAAAAATAACCGACGAGAAAATGACTCCTTC
GAGCAGCCGGTACCAAACCAGGTATCTTTCCCAAGGTAGGCAGACATTTT
TATCCATCGGTCTATTTTTTTCCACCCCCACCCCCACCCCCACCACGCAC
CACCTGTCGTATCCGCGGACTATATACACGTAGCTTCACTGCGCCCTACT
CGCAGCATTACTAGAATTTTCCGTCTCCACCAAAGGCGAACGCACCCCTC
CGAATCGTCGGCCGCTTGTGATTGTCGCACGTGTCTTGGCTGTCTGCCTC
GTTGCCCTTCCGTCGGTGCAGGCGCAGCGCGAGGCCGCCTCGTTGCAGAA
GGAAGCCGCCGCGGTGGAGGCAGAGCTGCAGCGCACCCAGATCCTCGTGC
GGGAACAGGAAGAAGGTGAGCAGAGCGGAGTTTCCAACCCCAACCCGACC
CTGAACGCGCGCACGCTCGCACTGGCGCCCACACAGACAGGGCAGAGTCG
GGATTCACGAGAGCACGAGGAACAACAAAAGTCAGCGAGGAATCCCGCCG
CCGCTGTGAGAAGAGGTCGAAAGTGCGGTGCCTGCCTGGACCGAGGCGAA
GGAGAAGGAAAAAAAAAAAAGGTCTCTTACCGAGCTCCGATGCTTGTCGG
CGCCGTGAGTTGTCCGAGCCGACTTCGAGCACGGCTTGCCGCGCGCTTGG
AAAGCCACGCAATGTCCCCGATACTCTTGAGGTTCTGCCGGGGGTTGACC
GTGTGGAGGGCGTTAGCCGCTTCGCTGATGGACACGCCCCGTGGCGCCTT
CCTTATTTCGATTTGTTTTTGTTGCTGCGTAGTGCAGTGCCTCCTTCGGC
GGCTTCTTTCGACGCCCATTCGAGAGGCACGCGCACGAAAGCAGCCCTCC
GCGTGGGTTCGGGTGTGCGCGTGTTTGCGGTCCTCGGGGCAGCGTGCTGC
CGGGGGTCTGTGCGGCCGACCGGCGCCCCGTCCTTACCACTCCGTCTCGA
ACGACCCCCCCCTTCCCTGAACGCTGAGAAAGGGGCTCTTCCAAACCGTT
CGTCGTGTGGAGGCACACAACTCGTCGGGTGTTGGTTCCTCTCGTCCTCT
GGATTTGCTGGCCGAGGCGCTCCGCCAGGCTCACCGCGCGTTCGTTTCGT
GGCGCTCTCCTGCCGAGCCGCTCGCCGAGCCGCTTGGGTGGTTGGTTGGC
CCCGGGTGGTCGATCGTTTGCCCCCTCCCTGCTTCCCAGCTCGCCGGACC
CGCGGGCATGCTGACCCCCTCGCTTGCTCCCGGGCTAGCCCGCCCGCCCA
CCCAGTCCCTCTGTAACTTCCTTCGCTGACTCGCTCGGTGGCCGACCATG
GCGATCCCATGCGCGCGCTCGTGGGTGCCTTCGTGTGTCTGTTTCCGCAC
CCCGGTCGCTCGAACGCCGCACGAACGATGTGGAACGAATGGACGCGCCG
ACACACCGACGGGCGGCTGGACGGGCGACCAACACGAACCAGCTCTCGCG
CGTTCCCGGAGGTCTCTGACGGAGGCGGCCGCAGCCGCCTCGGCCGTGAA
GGCTCGGCTCGGCCCCGCTGCTCCTTCCAACCCAAGCAAGGGCAGGAAGG
GCGCCAAGGCCGCCAAGAACGGCGGCAGGGTCCGCAAGCAGGGGAGAGCG
GC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12152:378..3029-

>mRNA_H-canaliculatus_F_contig12152.1859.1 ID=mRNA_H-canaliculatus_F_contig12152.1859.1|Name=mRNA_H-canaliculatus_F_contig12152.1859.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12152:378..3029- (Hapterophycus canaliculatus Oshoro5f female)
GGCGCTCCTTCGGCGGCGACGGCGATAGCGGCGGCGGAGGCGGCGGCACC
GGCGGCGAGGCGGCGCCGGGATCGGGAGGCGTTAGAGGCAGCGTGGAGGT
GGTGGGTGGGCGGCTGGCTGAGGCGTCGGGGGCAGAGGATCAGGGCGCTC
CTTCGGCGGCGACGGCGATAGCGGCGGCGGAGGCGGCGGCACCGGCGGCG
AGGCGGCGCCGGGATCGGGAGGCGTTAGAGGCAGCGTGGAGGTGGTGGGT
GGGCGGCTGGCTGAGGCGTCGGGGGCAGAGGATCAGGACGATCGAGCTGG
AATCGAAGCGCCGGCAAGAGCGGGACCGTGACCTTGCCGAAGAGCTAGCA
CAGGACGATCGAGCTGGAATCGAAGCGCCGGCAAGAGCGGGACCGTGACC
TTGCCGAAGAGCTAGCACAGGCGCAGCGCGAGGCCGCCTCGTTGCAGAAG
GAAGCCGCCGCGGTGGAGGCAGAGCTGCAGCGCACCCAGATCCTCGTGCG
GGAACAGGAAGAAGGCGCAGCGCGAGGCCGCCTCGTTGCAGAAGGAAGCC
GCCGCGGTGGAGGCAGAGCTGCAGCGCACCCAGATCCTCGTGCGGGAACA
GGAAGAAGCTCTCGCGCGTTCCCGGAGGTCTCTGACGGAGGCGGCCGCAG
CCGCCTCGGCCGTGAAGGCTCGGCTCGGCCCCGCTGCTCCTTCCAACCCA
AGCAAGGGCAGGAAGGGCGCCAAGGCCGCCAAGAACGGCGGCAGGGTCCG
CAAGCAGGGGAGAGCGCTCTCGCGCGTTCCCGGAGGTCTCTGACGGAGGC
GGCCGCAGCCGCCTCGGCCGTGAAGGCTCGGCTCGGCCCCGCTGCTCCTT
CCAACCCAAGCAAGGGCAGGAAGGGCGCCAAGGCCGCCAAGAACGGCGGC
AGGGTCCGCAAGCAGGGGAGAGCG
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