mRNA_H-canaliculatus_F_contig12148.1857.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12148.1857.1
Unique NamemRNA_H-canaliculatus_F_contig12148.1857.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12148.1857.1 vs. uniprot
Match: A0A6H5KJT7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJT7_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 7.010e-51
Identity = 89/110 (80.91%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:    1 TRALWDTSVRYNLDEDPRRMEHHPSKDVLNSKYSASALGGSSGKPVVALSSGRHVFFHAVGDGTGKQIESVGAAHGSSGTTILSMLASKDGKLLVTTAAGDSRARLWTFP 330
            T ALWDTSVRYNLDEDPR++E H SKD +NSKYSA+ALGG   K VVALSSGRH+FF +VG+G+GKQ+ESVGAAHGSSGT+ILSMLASKDGKLL TTAAGDSRARLW FP
Sbjct:  315 TWALWDTSVRYNLDEDPRKLEQHASKDAMNSKYSAAALGGEDAK-VVALSSGRHIFFFSVGEGSGKQVESVGAAHGSSGTSILSMLASKDGKLLATTAAGDSRARLWRFP 423
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BLAST of mRNA_H-canaliculatus_F_contig12148.1857.1 vs. uniprot
Match: A0A835Z556_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z556_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.530e-6
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:    1 TRALWDTSVRYNLDEDPRRMEHHPSKDVLNSKYSASALGGSSGKPVVALSSGRHVFFHAVGDGTGKQIESVGAAHGSSGTTILSMLASKDGKLLVTTAAGDSRARLWTFP 330
            T  +WD +VRYNLDEDPR    +P  D      +  A G   G  VVA+S+G+ + + +    TG Q+  V  A G+   +I+ + + +D   +   A+G+  A LW FP
Sbjct:  385 TWRVWDITVRYNLDEDPRCQGTYP-LDATKGVPTGIAFGP--GGKVVAISAGKRLLYFSAE--TGAQVGEVADACGTG--SIVGLKSPRDAHCVAVVASGNKHAFLWKFP 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12148.1857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJT7_9PHAE7.010e-5180.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z556_9STRA2.530e-634.55WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12148contigH-canaliculatus_F_contig12148:3341..3676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue3.9e-43
Seed eggNOG ortholog2880.D7G2G6
Preferred nameTBL2
KEGG rclassRC00002
KEGG koko:K09113,ko:K13917,ko:K14570
KEGG ReactionR03828,R10814
KEGG Pathwayko03008,ko03015,ko04931,ko04932,map03008,map03015,map04931,map04932
GOsGO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0009267,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010033,GO:0012505,GO:0016020,GO:0016021,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030176,GO:0030968,GO:0031224,GO:0031227,GO:0031369,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036293,GO:0036294,GO:0042149,GO:0042175,GO:0042221,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051219,GO:0051716,GO:0065007,GO:0070482,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071496,GO:0098827
EggNOG free text desc.cellular response to glucose starvation
EggNOG OGsCOG2319@1,KOG2096@2759
EC2.7.7.50
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.4335902-CDS-H-canaliculatus_F_contig12148:3340..36761622928928.4335902-CDS-H-canaliculatus_F_contig12148:3340..3676Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12148 3341..3676 -
1696845615.9497838-CDS-H-canaliculatus_F_contig12148:3340..36761696845615.9497838-CDS-H-canaliculatus_F_contig12148:3340..3676Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12148 3341..3676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12148.1857.1prot_H-canaliculatus_F_contig12148.1857.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12148 3341..3676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12148.1857.1

>prot_H-canaliculatus_F_contig12148.1857.1 ID=prot_H-canaliculatus_F_contig12148.1857.1|Name=mRNA_H-canaliculatus_F_contig12148.1857.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
TRALWDTSVRYNLDEDPRRMEHHPSKDVLNSKYSASALGGSSGKPVVALS
SGRHVFFHAVGDGTGKQIESVGAAHGSSGTTILSMLASKDGKLLVTTAAG
DSRARLWTFPS*
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mRNA from alignment at H-canaliculatus_F_contig12148:3341..3676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12148.1857.1 ID=mRNA_H-canaliculatus_F_contig12148.1857.1|Name=mRNA_H-canaliculatus_F_contig12148.1857.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12148:3341..3676- (Hapterophycus canaliculatus Oshoro5f female)
ACAAGGGCGCTGTGGGACACCTCCGTCCGATACAACCTGGACGAAGACCC
CCGCAGGATGGAGCACCACCCGTCTAAAGACGTCCTCAACTCCAAGTACT
CGGCGTCCGCGCTCGGGGGCAGCAGCGGGAAGCCGGTGGTGGCCCTGTCT
TCCGGCAGACACGTCTTCTTCCACGCCGTCGGGGACGGGACGGGCAAGCA
GATCGAGAGCGTGGGAGCGGCGCACGGGTCTTCGGGGACCACGATCTTGT
CCATGCTCGCGTCGAAGGACGGCAAGCTGCTAGTGACGACGGCGGCGGGG
GACTCTCGCGCGCGGCTGTGGACGTTCCCCAGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12148:3341..3676-

>mRNA_H-canaliculatus_F_contig12148.1857.1 ID=mRNA_H-canaliculatus_F_contig12148.1857.1|Name=mRNA_H-canaliculatus_F_contig12148.1857.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12148:3341..3676- (Hapterophycus canaliculatus Oshoro5f female)
ACAAGGGCGCTGTGGGACACCTCCGTCCGATACAACCTGGACGAAGACCC
CCGCAGGATGGAGCACCACCCGTCTAAAGACGTCCTCAACTCCAAGTACT
CGGCGTCCGCGCTCGGGGGCAGCAGCGGGAAGCCGGTGGTGGCCCTGTCT
TCCGGCAGACACGTCTTCTTCCACGCCGTCGGGGACGGGACGGGCAAGCA
GATCGAGAGCGTGGGAGCGGCGCACGGGTCTTCGGGGACCACGATCTTGT
CCATGCTCGCGTCGAAGGACGGCAAGCTGCTAGTGACGACGGCGGCGGGG
GACTCTCGCGCGCGGCTGTGGACGTTCCCCAGCTGAACAAGGGCGCTGTG
GGACACCTCCGTCCGATACAACCTGGACGAAGACCCCCGCAGGATGGAGC
ACCACCCGTCTAAAGACGTCCTCAACTCCAAGTACTCGGCGTCCGCGCTC
GGGGGCAGCAGCGGGAAGCCGGTGGTGGCCCTGTCTTCCGGCAGACACGT
CTTCTTCCACGCCGTCGGGGACGGGACGGGCAAGCAGATCGAGAGCGTGG
GAGCGGCGCACGGGTCTTCGGGGACCACGATCTTGTCCATGCTCGCGTCG
AAGGACGGCAAGCTGCTAGTGACGACGGCGGCGGGGGACTCTCGCGCGCG
GCTGTGGACGTTCCCCAGCTGA
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