mRNA_H-canaliculatus_F_contig12144.1855.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12144.1855.1
Unique NamemRNA_H-canaliculatus_F_contig12144.1855.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12144.1855.1 vs. uniprot
Match: D8LCQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ1_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 8.080e-120
Identity = 193/256 (75.39%), Postives = 208/256 (81.25%), Query Frame = 1 
Query:    4 KVEEECPLEPVEVEELRCANDFPPSVFEEVLDSVRRAFPSGRATYPEFVRHVTSSGLLPEPLSMGFLLDRMALTAAAHTGILGAAARGEEEASLCSGGFEDGSGGXXXXXXXXXXXXXXXXXADAVELEVEFLMVAFSAAVNTTPAERIRQLWEMTRDQPAGGA-GGVQQEQDEEACIPASRAISIVGMLMASHQLPSGRYAVKDERRVWPVQQYRLASGRDAFYKGLLSLHEDEEKRAKGWIERKMAPAYDPAKE 768
            +VEE CPLEPVEVEELRC+NDFPP VF +VLDSVRRAFPSGRATYPEF RHVTSSGLLPEPLSMGFLLDRMALTAAAH GILGAAARGE   S  S G E G GG                 ADAVELE+EFLMVAFSAAVNT PAER+RQLW+M + +  G A GG  Q+  E A +PAS+AI++VGMLMASHQLPSGRYAVKDE RVWPVQQYRLASGRDAF +GLLSLHEDEEKR KGWIERK+APAYDPA E
Sbjct:   29 QVEEACPLEPVEVEELRCSNDFPPDVFGKVLDSVRRAFPSGRATYPEFARHVTSSGLLPEPLSMGFLLDRMALTAAAHPGILGAAARGETPHSGGSSG-EGGVGGWASSS------------ADAVELEIEFLMVAFSAAVNTRPAERMRQLWDMAQGRSMGAADGGRDQDTGEGALLPASKAIALVGMLMASHQLPSGRYAVKDESRVWPVQQYRLASGRDAFLEGLLSLHEDEEKRTKGWIERKLAPAYDPANE 271
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12144.1855.1 vs. uniprot
Match: A0A6H5JDJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ3_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 5.100e-116
Identity = 188/256 (73.44%), Postives = 204/256 (79.69%), Query Frame = 1 
Query:    4 KVEEECPLEPVEVEELRCANDFPPSVFEEVLDSVRRAFPSGRATYPEFVRHVTSSGLLPEPLSMGFLLDRMALTAAAHTGILGAAARGEEEASLCSGGFEDGSGGXXXXXXXXXXXXXXXXXADAVELEVEFLMVAFSAAVNTTPAERIRQLWEMTRDQPAGGAG-GVQQEQDEEACIPASRAISIVGMLMASHQLPSGRYAVKDERRVWPVQQYRLASGRDAFYKGLLSLHEDEEKRAKGWIERKMAPAYDPAKE 768
            +VEE CPLEPVEVEELRC+NDFPP VF++VLDSVRRAFPSGRATYPEF RHVTSSGLLPEP+SMGFLLDRM LTAAAH GILGAAARGE   S    G   G GG                 ADAVELEV+FLMVAFSAAVNT PAER RQLW+M + +  G    G  Q+ DE   +PAS+AIS+VGMLMASHQLPSGRYAVKDE RVWPVQQYRLASGRDAF +GLLSLHEDEEKR KGWIERK+APAYDPA+E
Sbjct:  156 QVEEACPLEPVEVEELRCSNDFPPDVFDKVLDSVRRAFPSGRATYPEFARHVTSSGLLPEPMSMGFLLDRMVLTAAAHRGILGAAARGETPHS----GGSSGEGGVEGWASIS---------ADAVELEVDFLMVAFSAAVNTRPAERTRQLWDMAQGRSMGATDRGQDQDTDEATLLPASKAISLVGMLMASHQLPSGRYAVKDESRVWPVQQYRLASGRDAFLEGLLSLHEDEEKRTKGWIERKLAPAYDPAQE 398
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12144.1855.1 vs. uniprot
Match: A0A835Z460_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z460_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.520e-37
Identity = 95/246 (38.62%), Postives = 128/246 (52.03%), Query Frame = 1 
Query:    7 VEEECPLEPVEVEELRCANDFPPSVFEEVLDSVRRAFPSGRATYPEFVRHVTSSGLLPEPLSMGFLLDRMALTAAAHTGILGAAARGEEEASLCSGGFEDGSGGXXXXXXXXXXXXXXXXXADAVELEVEFLMVAFSAAVNTTPAERIRQLWEMTRDQPAGGAGGVQQEQDEEACIPASRAISIVGMLMASHQLPSGRYAVKDERRVWPVQQYRLASGRDAFYKGLLSLHEDEEKRAKGWIERKMA 744
            VEE+ PL P EVE+LRC ND PPS+F EV+ +V+  FP G ATY +F   V +  LLP PL    LLDR  +       +LG       +A+L  G  ++                           + + L+VAFS  VNTT  ER+ QLW +   Q     GG     D    +  +    ++ +L+A+ QLPS RYA+K   + WP QQYRLASG D     L  LH+D+EK+ KGWIERK++
Sbjct:   30 VEEKSPLAPDEVEDLRCENDLPPSLFVEVVHNVQTEFPDGGATYSDFTDVVAA--LLPHPLEQAHLLDRYMVQ------LLGVLGTRLWQATLPGGATKEAG--------------HELGTDHKQTYDTDLLLVAFSMTVNTTVQERMEQLWHLIAAQ-----GG-----DNTTDVDYASMARLLDLLLATRQLPSSRYAIKSGEK-WPTQQYRLASGTDLLENALAELHDDDEKKKKGWIERKLS 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12144.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCQ1_ECTSI8.080e-12075.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDJ3_9PHAE5.100e-11673.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z460_9STRA1.520e-3738.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12144contigH-canaliculatus_F_contig12144:482..3678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score358.2
Seed ortholog evalue3.1e-96
Seed eggNOG ortholog2880.D8LCQ1
EggNOG OGs2E8M5@1,2SF2Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002040.1
Exons4
Model size768
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12144.1855.1prot_H-canaliculatus_F_contig12144.1855.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12144 482..3678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.2866237-CDS-H-canaliculatus_F_contig12144:481..6501622928928.2866237-CDS-H-canaliculatus_F_contig12144:481..650Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 482..650 -
1696845615.8738747-CDS-H-canaliculatus_F_contig12144:481..6501696845615.8738747-CDS-H-canaliculatus_F_contig12144:481..650Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 482..650 -
1622928928.3000708-CDS-H-canaliculatus_F_contig12144:1487..16301622928928.3000708-CDS-H-canaliculatus_F_contig12144:1487..1630Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 1488..1630 -
1696845615.889034-CDS-H-canaliculatus_F_contig12144:1487..16301696845615.889034-CDS-H-canaliculatus_F_contig12144:1487..1630Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 1488..1630 -
1622928928.3158033-CDS-H-canaliculatus_F_contig12144:2700..30281622928928.3158033-CDS-H-canaliculatus_F_contig12144:2700..3028Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 2701..3028 -
1696845615.898318-CDS-H-canaliculatus_F_contig12144:2700..30281696845615.898318-CDS-H-canaliculatus_F_contig12144:2700..3028Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 2701..3028 -
1622928928.3315475-CDS-H-canaliculatus_F_contig12144:3550..36781622928928.3315475-CDS-H-canaliculatus_F_contig12144:3550..3678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 3551..3678 -
1696845615.9073427-CDS-H-canaliculatus_F_contig12144:3550..36781696845615.9073427-CDS-H-canaliculatus_F_contig12144:3550..3678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12144 3551..3678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12144.1855.1

>prot_H-canaliculatus_F_contig12144.1855.1 ID=prot_H-canaliculatus_F_contig12144.1855.1|Name=mRNA_H-canaliculatus_F_contig12144.1855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
MKVEEECPLEPVEVEELRCANDFPPSVFEEVLDSVRRAFPSGRATYPEFV
RHVTSSGLLPEPLSMGFLLDRMALTAAAHTGILGAAARGEEEASLCSGGF
EDGSGGRGGWGDSSGSSGSSGGSADAVELEVEFLMVAFSAAVNTTPAERI
RQLWEMTRDQPAGGAGGVQQEQDEEACIPASRAISIVGMLMASHQLPSGR
YAVKDERRVWPVQQYRLASGRDAFYKGLLSLHEDEEKRAKGWIERKMAPA
YDPAKE
back to top

mRNA from alignment at H-canaliculatus_F_contig12144:482..3678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12144.1855.1 ID=mRNA_H-canaliculatus_F_contig12144.1855.1|Name=mRNA_H-canaliculatus_F_contig12144.1855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3197bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12144:482..3678- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGTCGAGGAAGAGTGTCCCCTGGAGCCGGTGGAGGTGGAGGAGCT
CAGGTGCGCCAACGACTTCCCGCCAAGCGTGTTCGAGGAGGTTTTGGACA
GCGTCAGGAGGGCGTTTCCTTCCGGGAGGTGGGTGGACAGACCTCCTCTG
TCACAGGCACACCCGAACATGTTATGCACGAGAAATCATGCCGCAACCGG
CGTTCCTATCGCATAGCGTATAACGAAGCGGTAGATTTGCCATTGATCGA
CGGCAGCATCCTCGCTACCCCCAAGCGCGTGTACTCTGTACAGCGCAATG
GTCCAACGAAAAAATCTACATGACACGCACGGAGTACGATGGCACTCGAC
CAGATATTGACGGAACGTTTTGGAAAGCAACCTTAGGCTAGGAATGCCTG
CTACGAAGCGCGCCTACCCCTTCGGCAAAGGTAAATCATTGACCACGTGT
GTAGTTCAAAAGCCTCCCGGTTGCAAATCAAGCGACGGAGGAGCCAAGCG
AATGGCTTCGCGATCCACCCGACCGATCCCGTCCCCCTCCTTCCGTTCTT
GTTTGGTGCGTGCTTGAACCGATTTTGCCGTTCCCGCTCCCTGAATCGCT
ACCCGCGGACGTGAAACGCATCCGGCGACCTTGAATGCGCTCGCACGTAG
GGCCACATACCCGGAATTCGTGCGCCACGTTACTTCGAGCGGTCTCTTGC
CGGAGCCTCTGTCGATGGGGTTTCTACTGGACAGAATGGCGTTAACGGCT
GCGGCTCACACCGGGATCCTCGGGGCTGCGGCGAGGGGAGAGGAGGAGGC
ATCACTCTGTAGTGGGGGGTTTGAAGACGGGAGTGGAGGCAGGGGAGGTT
GGGGCGACAGCAGCGGGAGCAGCGGGAGCAGCGGGGGCAGCGCGGATGCC
GTGGAGTTGGAGGTGGAGTTCTTGATGGTGGCGTTTTCTGCGGCGGTGAA
CACAACGCCGGCAGAGCGTATACGGCAGGTGTGTTCTTCGTGGCTCCTCT
CACCCGTGTCTTGTGTTTCGCTACCCGTCGCTGGGTCGAGCTCACCTGTC
CGTCGCGCCACGGATGGGACGTCCTTCCCAGCGTATCTTTTTTTGAGAAA
AATAGTCAAGAACACCAAAAATACCCTCATCTGGACCTCTGAGACAGAGT
GCAGCGGCTCAGGGAGGTTGTGTTGAATTACTTGCAGTGAGGGTTCAGTA
TGGTGGAAACGTATTTTTACGGTGGAAACGTATTTTACGTGTGTCAGATG
AGGCAGATGGGGGGCGACACACGCACAAGGCGCGCATCTGATATTTCCTG
TGATAAGGCGCCAAGTGAGCGTTTGTTGTCCCCGTAGTTGGTGATCCACA
CGTGCGAACTAAACCACGTGAGAGTGAAGTTGAAGGAGTAGATGGCACCC
TACAAAGAGAAGCGATCAGCCTGCCGACGTCAAGCGTTCGCTGCGGTCGA
AGGCGTACAACAGTTGATGCAAAAGACTCGAACCAGTACACACCAGCGCG
TATTTTTGTCTCGCGTTTTGTGTTGGGATTGACCTCGCGATCCGGCGGAA
CGTGAAAAAAATCGTCGCCGACGGACGAAATATGAGAGCGCGTTGCGAAT
CACGAGGGCCCTTCGATAGACCGAAGGCGAATATAGTCCACGTGTTTCTT
TAGTTGGCTCCTCCCTCGCGTCTGGTTTGCACGCCCAGTATCGTGGACCA
ATCGGAGACGAAGGAGTGAAAATGTTTCTCTCGCGGCTTTTGACTCACAC
CTCGTTTGTGTTGAAAGCTGCCCCGCCTCCTCGGTCGAGGGCTGTCCCCA
ACGAAGTTCGGGTTTTGGCGAGGGTAAATCGGAACATGAGTGACGACAGG
CGTTAAGCGTAAGCGAGACGGATGCACGTCGTTCAGGATGGAAGAGGAAG
ATTTTGAATGGAGATCACATTGGTGTGTTTGGCACTTTTCAACTGTCCGC
GACAACAACCACAATTTTGAGAAGAGACGCTGGACTCACAAGATTGCGTG
TCTAAACTTCAATAATGTTACGGCGATTGGCTCAACGTGTCCCAACAGCT
TTGGGAGATGACTCGAGATCAGCCCGCCGGCGGGGCGGGAGGGGTACAGC
AAGAGCAGGATGAAGAGGCGTGCATCCCAGCCTCGAGAGCTATTTCGATC
GTGGGCATGCTCATGGCCTCGCACCAGCTTCCATCCGGGAGGTGGGCGCT
GCTCGTGGCTGCGACGTGGTGTTTTGTTCGTTCTGCCCGTAGAGGCAGTG
CACCACTGTTGTTGTTGCTTTTGTTGTTGCTGTTCCTGTCGCTGTCGCTG
TCGCTGTTGTTGTTGCTGCTGCTTCCGCCGTAGTTGGGGTTTCTGCCGTT
TCATACACGAAAGGGCAGCTGTCCTCCGTTCTTCACCCCGGTTGCCGTAC
GGACTTCCGGACACCGTCGGCGGGGGGAGGGCGGGGGTTCTATCTTGGCT
GCCGTAGTTTTCCTATGTTGTACACAGAGATGTATCAATCAAAATACCCG
GCATGCCTACCCCTATGCGGTCAAATCGGCTTGGCAGGTGCTTGTCGCTT
GAGGAGCCCTTCTCGGAGCGGTGGGTTACCCTATGCGTGCCTCCCCCAGA
CCCACACCCGCGCACTCACTCCACTGCTGTCCGCACACTCGCACAACCCC
TACGAGCGTCGACACCGAAGGCTTGTGCGCCTCGTTCTCCTTTCCGGACT
GTCTACACCTGACATCGCGAATGCTGCGCCCGCCGCTGCGTCCTGGGTTG
CGCGGCTACACGCTGCGCTGCAGCGCCGTTTCCTTCTGCAAGCCCGCCGA
GCAAAGTAGCAAAGCAGACAATCGCCACCCCCCCCTCCCCCTCGCCTTGC
CCCTCCCCCTCTTACGTTCCTCTTCCTCCTCCTCGTTTCCTCCGCAATTC
GCCGCATGCCGCTCGCGCCCGCTGCCGCTGCATTCGTCCTGCGGCGCCCC
CCCCTGCCGGCCCGCGCCTCCCCGCATGGGCACGAACGCGCACCGTGCGC
ATGCTTGCACGCCCTGTGCCGTGCGCAGGTACGCCGTCAAAGACGAGCGG
CGAGTCTGGCCCGTCCAGCAGTACCGGCTCGCGTCGGGCAGGGACGCGTT
CTACAAGGGGCTCTTGTCACTGCACGAAGACGAGGAGAAGCGGGCGAAGG
GCTGGATCGAGCGCAAGATGGCGCCTGCGTACGACCCCGCGAAGGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12144:482..3678-

>mRNA_H-canaliculatus_F_contig12144.1855.1 ID=mRNA_H-canaliculatus_F_contig12144.1855.1|Name=mRNA_H-canaliculatus_F_contig12144.1855.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12144:482..3678- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGTCGAGGAAGAGTGTCCCCTGGAGCCGGTGGAGGTGGAGGAGCT
CAGGTGCGCCAACGACTTCCCGCCAAGCGTGTTCGAGGAGGTTTTGGACA
GCGTCAGGAGGGCGTTTCCTTCCGGGAGATGAAGGTCGAGGAAGAGTGTC
CCCTGGAGCCGGTGGAGGTGGAGGAGCTCAGGTGCGCCAACGACTTCCCG
CCAAGCGTGTTCGAGGAGGTTTTGGACAGCGTCAGGAGGGCGTTTCCTTC
CGGGAGGGCCACATACCCGGAATTCGTGCGCCACGTTACTTCGAGCGGTC
TCTTGCCGGAGCCTCTGTCGATGGGGTTTCTACTGGACAGAATGGCGTTA
ACGGCTGCGGCTCACACCGGGATCCTCGGGGCTGCGGCGAGGGGAGAGGA
GGAGGCATCACTCTGTAGTGGGGGGTTTGAAGACGGGAGTGGAGGCAGGG
GAGGTTGGGGCGACAGCAGCGGGAGCAGCGGGAGCAGCGGGGGCAGCGCG
GATGCCGTGGAGTTGGAGGTGGAGTTCTTGATGGTGGCGTTTTCTGCGGC
GGTGAACACAACGCCGGCAGAGCGTATACGGCAGGGCCACATACCCGGAA
TTCGTGCGCCACGTTACTTCGAGCGGTCTCTTGCCGGAGCCTCTGTCGAT
GGGGTTTCTACTGGACAGAATGGCGTTAACGGCTGCGGCTCACACCGGGA
TCCTCGGGGCTGCGGCGAGGGGAGAGGAGGAGGCATCACTCTGTAGTGGG
GGGTTTGAAGACGGGAGTGGAGGCAGGGGAGGTTGGGGCGACAGCAGCGG
GAGCAGCGGGAGCAGCGGGGGCAGCGCGGATGCCGTGGAGTTGGAGGTGG
AGTTCTTGATGGTGGCGTTTTCTGCGGCGGTGAACACAACGCCGGCAGAG
CGTATACGGCAGCTTTGGGAGATGACTCGAGATCAGCCCGCCGGCGGGGC
GGGAGGGGTACAGCAAGAGCAGGATGAAGAGGCGTGCATCCCAGCCTCGA
GAGCTATTTCGATCGTGGGCATGCTCATGGCCTCGCACCAGCTTCCATCC
GGGAGCTTTGGGAGATGACTCGAGATCAGCCCGCCGGCGGGGCGGGAGGG
GTACAGCAAGAGCAGGATGAAGAGGCGTGCATCCCAGCCTCGAGAGCTAT
TTCGATCGTGGGCATGCTCATGGCCTCGCACCAGCTTCCATCCGGGAGGT
ACGCCGTCAAAGACGAGCGGCGAGTCTGGCCCGTCCAGCAGTACCGGCTC
GCGTCGGGCAGGGACGCGTTCTACAAGGGGCTCTTGTCACTGCACGAAGA
CGAGGAGAAGCGGGCGAAGGGCTGGATCGAGCGCAAGATGGCGCCTGCGT
ACGACCCCGCGAAGGAGGTACGCCGTCAAAGACGAGCGGCGAGTCTGGCC
CGTCCAGCAGTACCGGCTCGCGTCGGGCAGGGACGCGTTCTACAAGGGGC
TCTTGTCACTGCACGAAGACGAGGAGAAGCGGGCGAAGGGCTGGATCGAG
CGCAAGATGGCGCCTGCGTACGACCCCGCGAAGGAG
back to top