mRNA_H-canaliculatus_F_contig1213.1849.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1213.1849.1
Unique NamemRNA_H-canaliculatus_F_contig1213.1849.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: D7FQI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI6_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 3.820e-70
Identity = 133/195 (68.21%), Postives = 152/195 (77.95%), Query Frame = 2 
Query:  191 DSSSPGGLVTPENAVAELRGGSELAATPDQNATHSKTSSLSSTRPEPE-EPVISTKS---EKMV-KEDVLTARHAERVLVVGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSI----NEKE-TKPVPE 745
            D+ S GG +TPE+   E++ GSE A TP++  T  + + L    P  E EPVI+  +   EKM  KEDVL A+H ERVLVVGKGV+LTANVTSCDKVVVEG FQGNIKTGTFVL+EGG MEGEVRC+DGCIGGNMKATI+ASK LLIGKAAVVTGDMVYD+LQV+DGGRLQGKL HYSS     N KE +KPV E
Sbjct:   21 DTRSLGG-ITPESVTPEIQSGSERAGTPNRLGTLPEPAELEEEEPAAEAEPVIAASTPQEEKMPDKEDVLAAKHEERVLVVGKGVVLTANVTSCDKVVVEGNFQGNIKTGTFVLSEGGQMEGEVRCSDGCIGGNMKATIIASKTLLIGKAAVVTGDMVYDSLQVLDGGRLQGKLTHYSSTTAGENGKEGSKPVQE 214
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A6H5JYZ3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ3_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.000e-64
Identity = 127/194 (65.46%), Postives = 150/194 (77.32%), Query Frame = 2 
Query:  191 DSSSPGGLVTPENAVAELRGGSELAATPDQNATHSKTSSLSSTRPEPE-EPVI--STKSEKM-VKEDVLTARHAERVLVVGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSI----NEKE-TKPVPE 745
            D+ S GG +TPE+   E++ GSE A TP++  T    + L    P  E +PVI  ST  EKM  +E VL A+H ERVLVVGKGV+LTANVTSCDKVVVEG FQGNI+TGTFVL+EGG MEGEVRC++GCIGGNMKATI+AS+ LLIGKAAVVTGDMVYD+LQV++GGR+QGKL HYSS     N KE +KPV E
Sbjct:  148 DTRSLGG-ITPESVTPEIQSGSERAGTPNRLGTLPGPAELEEEEPAAETKPVIAASTPEEKMPAEEGVLAAKHEERVLVVGKGVVLTANVTSCDKVVVEGNFQGNIETGTFVLSEGGQMEGEVRCSEGCIGGNMKATIIASETLLIGKAAVVTGDMVYDSLQVLEGGRIQGKLTHYSSSTAGENGKEGSKPVQE 340
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: D7FXK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXK1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 6.860e-12
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 2 
Query:  401 ERVLVVGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILA-SKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSINEKETKPVP 742
            +RVLVVGK V++TA+V +CD V+V+G   GNI     V+ +GG M G V C +  + G+ +   +    +L +   A V G   Y  L V DG  L G+L +  S+ ++   P P
Sbjct:   77 KRVLVVGKSVVMTADVENCDAVIVQGNLDGNIVAKYVVIMKGGCMRGTVVCEEADVAGSFEGVEMTIHHRLTLSGTARVGGKTTYHRLSVHDGAILTGELQYKPSLRDETAVPAP 191
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A2E7K2V2_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E7K2V2_9RICK)

HSP 1 Score: 69.7 bits (169), Expect = 2.010e-10
Identity = 35/118 (29.66%), Postives = 66/118 (55.93%), Query Frame = 2 
Query:  386 TARHAERVLVVGKGVILTANVTSCDKVVVEGQFQGNIK-TGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSINEKETKP 736
            T R ++R+L VG  + +   +T+CD++V+EGQ    +K   T  LAE G  +G     D  I G  +  +L + +L+I    VV G++ Y  +++  GG++ G ++  S  ++ +++P
Sbjct:  134 TGRASKRILTVGNDIQMKGEITTCDRLVIEGQVDATLKDVHTVELAESGSFKGTAEIEDAEISGIFEGDLLVTGRLIIYATGVVRGNITYGEIEIERGGQISGNISQVSEASDAKSQP 251
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A5C6U6D3_9SPHN (Polymer-forming cytoskeletal protein n=1 Tax=Sphingorhabdus soli TaxID=2601267 RepID=A0A5C6U6D3_9SPHN)

HSP 1 Score: 65.9 bits (159), Expect = 6.220e-10
Identity = 34/107 (31.78%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:  413 VVGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSINEKETK 733
            V+G  V++T N++S   + ++G  +G++K   FV  EG  ++G +      I G ++ +I A + L+I + A +TGD+VY NL + +GG+++GK +H  +  E+  +
Sbjct:   10 VLGADVVVTGNISSTVDLHIDGCVEGDLKCANFVQGEGSAIKGAIVAETARIAGTVEGSIEA-RDLVIQRTARITGDVVYQNLTIENGGKVEGKFSHKRNAGERRAE 115
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A2D6G5Q8_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6G5Q8_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 8.140e-10
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 2 
Query:  410 LVVGKGVILTANVTSCDKVVVEGQFQGNIKTG-TFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSS 712
            L VG+ + LT  +TSC+K+VVEGQ + ++    T V+A  GH +G    A+  I G  + T++A  KL I K   V G + Y  + +  GG + G +A   S
Sbjct:   83 LTVGRNIRLTGEITSCEKLVVEGQVEASLTDAHTIVIAPHGHFKGNASVAEADISGRFEGTLVAQDKLTIRKDGCVDGSVRYGKIVIEAGGEISGDMASLDS 184
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A6N6VHR0_9HYPH (Polymer-forming cytoskeletal protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VHR0_9HYPH)

HSP 1 Score: 65.1 bits (157), Expect = 3.900e-9
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 2 
Query:  416 VGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKL 697
            VG+G+ L   + SCD +V+EG  Q  I++GT  ++E G + GE       I G    T++  K L I     VTG + Y  L+V  GGRL G++
Sbjct:   74 VGRGLRLEGKIESCDSLVIEGDVQATIESGTLTISETGEVRGEATVDQAEIQGRFDGTLVVRKCLTINATGKVTGTIRYGELKVEQGGRLTGQV 167
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A2E1EK97_9HYPH (Cell shape determination protein CcmA n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E1EK97_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 1.460e-8
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 2 
Query:  416 VGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSINEKETK 733
            VG+G+ L   + SCD +V+EG  Q  I++GT  ++E G + G+       I G    T+   K L I  +  VTG + Y  L+V  GG++ G++   S   E+ T+
Sbjct:   83 VGRGLKLEGKIQSCDSLVIEGDVQATIESGTLTISETGDVRGDATVDAAEINGKFDGTLTVRKCLTINSSGRVTGTVQYGELKVEQGGQVSGEIRAGSDSGEEGTE 188
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A2N3EDR5_9PROT (Cell shape determination protein CcmA n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EDR5_9PROT)

HSP 1 Score: 63.2 bits (152), Expect = 2.560e-8
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 2 
Query:  386 TARHAERVLVVGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKL 697
            T  HA   L VG+G+ L   + SCD +V+EG  Q  I++GT  ++E G + GE    +  I G  + T+   K L I     + G + Y  L+V  GG++ G++
Sbjct:   71 TPTHAAN-LHVGRGLKLEGKIQSCDALVIEGDVQATIESGTLTISETGEVRGEATVDEAEINGKFEGTLTVRKCLTINATGRINGKVRYGELRVEQGGQISGEI 173
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Match: A0A2N3DXE7_9PROT (Cell shape determination protein CcmA n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-13 TaxID=2013659 RepID=A0A2N3DXE7_9PROT)

HSP 1 Score: 61.6 bits (148), Expect = 3.210e-8
Identity = 34/121 (28.10%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:  386 TARHAERVLVVGKGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIGGNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSINEKETKPVPEI 748
            T  H     ++G  V++T NV +   + V+G+ +G++K    V  E   ++G V      + G +  +I A K L++  +A +TGD++Y+N+ + +GG++ GKL+H  +   K   P+  +
Sbjct:   25 TGAHHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVIAETAKLAGLVDGSIEA-KTLIVHASARITGDVIYENITIENGGQVDGKLSHRRAGAVKGPPPLEVV 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1213.1849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQI6_ECTSI3.820e-7068.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYZ3_9PHAE3.000e-6465.46Reverse transcriptase domain-containing protein n=... [more]
D7FXK1_ECTSI6.860e-1236.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2E7K2V2_9RICK2.010e-1029.66Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
A0A5C6U6D3_9SPHN6.220e-1031.78Polymer-forming cytoskeletal protein n=1 Tax=Sphin... [more]
A0A2D6G5Q8_9PROT8.140e-1036.27Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A6N6VHR0_9HYPH3.900e-937.23Polymer-forming cytoskeletal protein n=1 Tax=Parvi... [more]
A0A2E1EK97_9HYPH1.460e-833.02Cell shape determination protein CcmA n=2 Tax=Hyph... [more]
A0A2N3EDR5_9PROT2.560e-833.65Cell shape determination protein CcmA n=1 Tax=Alph... [more]
A0A2N3DXE7_9PROT3.210e-828.10Cell shape determination protein CcmA n=1 Tax=Alph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1213contigH-canaliculatus_F_contig1213:9060..13742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.5
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog269796.Rru_A0151
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs1N26P@1224,2JZ8N@204441,2UD9Q@28211,COG1664@1,COG1664@2
COG Functional cat.M
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-01_008800.1
Exons3
Model size784
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1213.1849.1prot_H-canaliculatus_F_contig1213.1849.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1213 9060..13621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.0052114-CDS-H-canaliculatus_F_contig1213:9059..93191622928927.0052114-CDS-H-canaliculatus_F_contig1213:9059..9319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 9060..9319 -
1696845615.4733071-CDS-H-canaliculatus_F_contig1213:9059..93191696845615.4733071-CDS-H-canaliculatus_F_contig1213:9059..9319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 9060..9319 -
1622928927.0478988-CDS-H-canaliculatus_F_contig1213:13000..133561622928927.0478988-CDS-H-canaliculatus_F_contig1213:13000..13356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 13001..13356 -
1696845615.4894087-CDS-H-canaliculatus_F_contig1213:13000..133561696845615.4894087-CDS-H-canaliculatus_F_contig1213:13000..13356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 13001..13356 -
1622928927.0641267-CDS-H-canaliculatus_F_contig1213:13574..136211622928927.0641267-CDS-H-canaliculatus_F_contig1213:13574..13621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 13575..13621 -
1696845615.5003498-CDS-H-canaliculatus_F_contig1213:13574..136211696845615.5003498-CDS-H-canaliculatus_F_contig1213:13574..13621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 13575..13621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928927.0795789-UTR-H-canaliculatus_F_contig1213:13621..137421622928927.0795789-UTR-H-canaliculatus_F_contig1213:13621..13742Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1213 13622..13742 -
1696845615.508218-UTR-H-canaliculatus_F_contig1213:13621..137421696845615.508218-UTR-H-canaliculatus_F_contig1213:13621..13742Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1213 13622..13742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1213.1849.1

>prot_H-canaliculatus_F_contig1213.1849.1 ID=prot_H-canaliculatus_F_contig1213.1849.1|Name=mRNA_H-canaliculatus_F_contig1213.1849.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=221bp
MSGRRRIAVGRKFSRSFSKEAVGDSSSPGGLVTPENAVAELRGGSELAAT
PDQNATHSKTSSLSSTRPEPEEPVISTKSEKMVKEDVLTARHAERVLVVG
KGVILTANVTSCDKVVVEGQFQGNIKTGTFVLAEGGHMEGEVRCADGCIG
GNMKATILASKKLLIGKAAVVTGDMVYDNLQVIDGGRLQGKLAHYSSINE
KETKPVPEIKEIKEIKEIKA*
back to top

mRNA from alignment at H-canaliculatus_F_contig1213:9060..13742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1213.1849.1 ID=mRNA_H-canaliculatus_F_contig1213.1849.1|Name=mRNA_H-canaliculatus_F_contig1213.1849.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4683bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1213:9060..13742- (Hapterophycus canaliculatus Oshoro5f female)
ATTTTTAAGTCTTCTCAAACGGACATATAGCACGCGTAGGATCATTGCCC
GAGAACAGCACCCCGTTCGCGATCCCCGGCTACAGACCTATTCCGCACGG
CACTCATCCACAGTATAACGTATGTCGGGCAGGAGGCGCATAGCGGTTGG
GAGGAAATTCTCGAGGAGGTACGAATGTGCGGTTTGAAGCGCCCTGGCGT
TGGTCGGCTCATTTTCGCACTGAAAGGAACCCTTTTGGCCCTCTATTTTA
TGGGTTCTATAAAAGCTGATTTGAGTTCTGATTCGTAGTCAAAGCTCAAA
TCAAAGGGGCGCACCACACACCGACGATCAAAACCGCTCACACTCTTACC
TACGATCTACCCTCCCGCTCCCGTACACACCCGCAGCTTTTCGAAAGAGG
CAGTCGGCGATAGCAGCAGTCCTGGAGGTCTCGTAACTCCGGAGAACGCT
GTCGCAGAGCTTCGCGGCGGATCGGAGTTGGCAGCAACGCCAGACCAAAA
CGCCACGCACAGCAAGACTTCGTCTCTTTCGAGCACCCGGCCGGAGCCCG
AGGAACCAGTGATCTCCACCAAATCCGAGAAAATGGTCAAGGAGGACGTG
CTGACTGCGAGGCACGCAGAGCGCGTGCTGGTGGTGGGTAAAGGGGTGAT
CCTGACCGCGAACGTGACGTCTTGCGACAAGGTCGTTGTCGAGGGCCAGT
TCCAGGGTAACATCAAAACCGGCACCTTCGTGCTCGCGGAAGGTGTGTAT
AACAGCTTAATGTTGGTCTCTTTTTCTGCTCTTTCGGTGTCGTGAGGATG
GACACAACGAAGGAGACTTTTTTTCATTCGTTCGCCTTGGAAAAAGAATA
ATGGTCAGTTGAGCGCAGCAGCTGAAGCACGGCGACCCGTGCACAATGGT
ATCTTCGCTGCGGTCGTGAATGGAAAAGCTCTTCTTGTGTTGGTGTCCTC
TGCTTGGCCGGCTGCGTACGTATGCCGCAGCCAGCAAGGTGTCTTTCAGG
GGACGGTCGGTCTCTTGTGAAAAGGAAAAATATTTGCGGTCCTTTCCAGC
CGACACACACATCCTTCCGACTTCTGACTGAGTTCAACCCAAATGCGAAA
TATGCGCATGGCATTTGAAAGACGGCGATATGTTCGTTGATGTCGGCGGG
TGATCTTGACCTCTCGGTACTCGTAGAGGGCAAACGCATGCTCTTCTTGT
TTGGTGCTGATACTACACGGCCGCAAATTCGCACGAGACACCTAGAGAAC
TATGGCGTATGGGCGAGGTATGGATACAGTAGTAATTATATCTATAGTCG
CGCGTAGGGTGAGCCGGCCTCGCTTCTTATTCCTTTGACATGTATCCAAA
ACCAAAAAGTCGAGACTTTGCGTAGATCGGGAATCGTCGTGGGGCTTGGC
TTATTAGTGCCGCCCGCGGTCTCAAGACGATTCCAAGCAATACCCGATGT
ACAAGAGCTTGGTTCGACGCGGCGCAGGATTCTTGTCGCGACCCATCTAC
GAGAAGCTCATGTATTTTATGTCTGGTGTGGTCACCGCCTTTTGTGAGGA
GAGACCGTCCCAAACAAGTGCGGTCATCAACTTGCACCGCAATCGAGACT
AAAAATAGAGACTAATTCGACCAAAATGCGGTGAAATGCGGTGACGGCAC
CGACAAACGTCGAGGACCAACAACACCATATTATCTCTCCGCATAGCACG
GAGACCTCCGCACCATAACCTCGACTTGGACCTGAATCAAGGGTAGTGGC
TGCACGAGGGAGGCCGTCTACCTCTCTGCTCGAGGCTAGATAGGATAGGA
TTGCTACGACTTTCATGTCACATACCCGCTCGCTGCCCGGCGATCGTAGG
CAGCAAACTTTTTTAGTCCCGGCGACTCCGAAACAGAAACGGGGGGGGGG
GTATTCTAGGATCATAGATGAAATTCAGGATCCTAGATAACAACGGTTGT
TTTTTTGTCTCAGAGTCAACGCGCGCAGCAATGGACGCTTCGCCTGGCCC
GGAGGAAATCCTGGGTGCGATGACGCGCTCGTGTTGGTGTGGTGTGTGCG
AAAAGCAAGTCCGACACGGATTTCGCCGCGTTCGGTCGCCGCGCTTCGGG
TTGCATTCGGTGTGGGGCGTGTATCGCGGCACCGAACGTAGATAACGCAG
ATCGGCTCGAGTAGGTATATGGACTTGGTTCGGCATGACCTCCGATCTCT
CAAACTCAAGCCTCCAGTTAAAAGGTAGCCGTGTGCACCCTCCTCCAAAC
CGATGTCGAGTGCTCGTTATTACGCCGCGATCCTTCCGGCATATATTTGC
CATGGATCAAAGTCTCTGAACGCACAGAAGGTACGGTTGGTATTCCGCCA
TTGCGTGAGTCCTGTGTTTGGACCCACCGAAAAGAGCAGCGTACATCTTC
CTCTCTTTTCTACTAAATGTTTTTGGTGTCTCTTACTTTCCCGACTTCTT
GTTTGCACAACGCAGTGTCAGTTAATCTCGATACGCGTCTTTGTTGGTCG
CGTAGGCCTTTCGCGCATCATCACGTACACGTGTCGTATCTGCAACAGTT
GCAGCAACTGTCGCCCTAACTTGGCAGAGGGGCGAACTTGATGTGGTACT
TGCCATTCTTCGCACCACCTTCTGAAAACGCACCGGAAATCCTGAAAACG
CAAGGGATTATCGTGTGCGATACGAGACTGCAGGCACGTCTTGTGTTCGG
GTGACACTGCTCTCTGTCCGTTGCTCCGTCTTTTTCACGCGTCACCGAGC
GGTCTGGAAATGGAAAACGCCTCGGCTCAGCATTGACGTCTGACCAGGAT
TGCGCCTCTAGGAACCTCCAACCTCTTTCGCGGCCACACACCACATACAC
GTTGCTGTGCTTGACGTACGTCTGTTGTTTCGTTGGTTGTGCCTCAGCAC
ATGTCGGAAATCGAATCCTTGGAAGGGACGTACTTCGCGAATCAAACGGG
AGCAGACGCTTTTCGATTAATCGTGGCTGCTCAATTCCAACCAACGTCCA
TCTGTTCGAGGACAGCAGGAACACAAAAACCGTTATAGTCAACATCGACC
GCCAAGATCTCCTGGGAGCCTGTCATCGTGTAGATACCGAGCAATCTTCC
TGAGCCCAGCGCACCTGAAACGCGTTGATTTCTAGCGCTCCTCTCGCAAA
AACAAAAAGTCTACGGGAAAAGCTGGTTCGCGAAGAGCTTACAAGAATAC
AGCAAGGGTTTTCACCAGCACATGACAAGCATTGCCGTTGCACAACTGCG
AGGCAGAAGGCAACGCACCTTTACAACGCAGCATACCGACTACCGCCTGC
TGCCCCACACCTGTACACGACGCCAATAAATGAAATTCGTCATGGTCCTT
CTGACAAGTTTCAACCAAAGTGAGAGAGGTTGAAAGCACAACCTGTTCGT
CTCTGCATGTGCATGTGCTTTCGTAGGCGTCTTTCTCGGATGTTGGGGCA
CTGAAACCGACGTAAGTGGTGGCCGTAACTCGTTTCCGTGCGTTGCGACC
GCTGCTACAAGCGGCCGACAAGTATCGCCATTGGTTGGTCAAACATAGTT
CAGGGATCCGACGCGCTGCAGAGCTTTGGAACAGTCCGGGTCGATGATGC
ACCAAAAGATTTTTCAGTGAAAGCGTCTCAACGGGACGTATTCTGCTGGT
GCTCGGCTTCTCCTCGCCGGCGGGTTCCACGAACGCTCTTCCCTGCGTTT
CGATCTGTTGAGAGCCCAGCACCTGCCACCCCGCTCCCCTGTGGGCGCGG
GAATCGCCATGCATGCCGTAACTTTGCGTACCGCGCTGCGAATCTGAAGT
TATGCGTTCAGTGGCGTCCACGAGTAGATATTGCCCGTATCGTGCAACTC
TCTTCCTCTCTATCGGGTCAAGATCATGCCGCATCTGAACGTGCCACCCC
CATACCGCGGACGAACAGTGTCCCCCTTCCCACCCCCCCGCGGCACGCGC
CGCTGTTCCTCCAAATCAAAACACTCGACGCGTTTGCTTTCGGTTTCGGA
GTGGAGACAGGGGCGGCGCCCTGTCCCCTCCCGTTGGAACCATGGCCGAC
GATCTCGAGTCTTCGGGAGACCGAGGAGTGATCATTGCAGCAGCTCGCCC
TCGGGGCTGACGTTGTGTTCGCGAGCGATAGAATCAGGCCGCCCTCGCAG
CACCAGCACTAGCACCAGCAGCGACATCGGCCTCCCCTCTTTCGGAACAG
CGCTTCTTGCCTCCCCATTGATGTCCCGTGCGAGCTGTGGTCTCTCCCTC
CTCATACCTCGGGCCGCTCCCGTCTTCCCACCCCGTCTTTCTCGAGTTTT
CTCCCACGCTTTGTTCCTCCAACTTGCGCACAACCAACCCAGCATCCACC
CACCCAATCGATCACAAACAAATCAACCGGAAAACAATCCGACGGATAAA
CTATACGGTACGGTGCGGTACAGGCGGCCACATGGAAGGGGAGGTGCGAT
GCGCGGACGGCTGCATCGGCGGCAACATGAAGGCGACCATCCTCGCCTCC
AAGAAGCTGCTCATCGGTAAGGCGGCCGTAGTCACGGGGGACATGGTGTA
CGACAACCTCCAGGTGATCGACGGCGGGCGGCTGCAGGGCAAGCTCGCCC
ACTACTCCTCCATCAACGAAAAGGAGACCAAGCCCGTACCTGAGATCAAG
GAGATCAAGGAGATCAAGGAGATCAAGGCGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1213:9060..13742-

>mRNA_H-canaliculatus_F_contig1213.1849.1 ID=mRNA_H-canaliculatus_F_contig1213.1849.1|Name=mRNA_H-canaliculatus_F_contig1213.1849.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1213:9060..13742- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGGCAGGAGGCGCATAGCGGTTGGGAGGAAATTCTCGAGGAGATG
TCGGGCAGGAGGCGCATAGCGGTTGGGAGGAAATTCTCGAGGAGCTTTTC
GAAAGAGGCAGTCGGCGATAGCAGCAGTCCTGGAGGTCTCGTAACTCCGG
AGAACGCTGTCGCAGAGCTTCGCGGCGGATCGGAGTTGGCAGCAACGCCA
GACCAAAACGCCACGCACAGCAAGACTTCGTCTCTTTCGAGCACCCGGCC
GGAGCCCGAGGAACCAGTGATCTCCACCAAATCCGAGAAAATGGTCAAGG
AGGACGTGCTGACTGCGAGGCACGCAGAGCGCGTGCTGGTGGTGGGTAAA
GGGGTGATCCTGACCGCGAACGTGACGTCTTGCGACAAGGTCGTTGTCGA
GGGCCAGTTCCAGGGTAACATCAAAACCGGCACCTTCGTGCTCGCGGAAG
CTTTTCGAAAGAGGCAGTCGGCGATAGCAGCAGTCCTGGAGGTCTCGTAA
CTCCGGAGAACGCTGTCGCAGAGCTTCGCGGCGGATCGGAGTTGGCAGCA
ACGCCAGACCAAAACGCCACGCACAGCAAGACTTCGTCTCTTTCGAGCAC
CCGGCCGGAGCCCGAGGAACCAGTGATCTCCACCAAATCCGAGAAAATGG
TCAAGGAGGACGTGCTGACTGCGAGGCACGCAGAGCGCGTGCTGGTGGTG
GGTAAAGGGGTGATCCTGACCGCGAACGTGACGTCTTGCGACAAGGTCGT
TGTCGAGGGCCAGTTCCAGGGTAACATCAAAACCGGCACCTTCGTGCTCG
CGGAAGGCGGCCACATGGAAGGGGAGGTGCGATGCGCGGACGGCTGCATC
GGCGGCAACATGAAGGCGACCATCCTCGCCTCCAAGAAGCTGCTCATCGG
TAAGGCGGCCGTAGTCACGGGGGACATGGTGTACGACAACCTCCAGGTGA
TCGACGGCGGGCGGCTGCAGGGCAAGCTCGCCCACTACTCCTCCATCAAC
GAAAAGGAGACCAAGCCCGTACCTGAGATCAAGGAGATCAAGGAGATCAA
GGAGATCAAGGCGTAGGCGGCCACATGGAAGGGGAGGTGCGATGCGCGGA
CGGCTGCATCGGCGGCAACATGAAGGCGACCATCCTCGCCTCCAAGAAGC
TGCTCATCGGTAAGGCGGCCGTAGTCACGGGGGACATGGTGTACGACAAC
CTCCAGGTGATCGACGGCGGGCGGCTGCAGGGCAAGCTCGCCCACTACTC
CTCCATCAACGAAAAGGAGACCAAGCCCGTACCTGAGATCAAGGAGATCA
AGGAGATCAAGGAGATCAAGGCGTAG
back to top