mRNA_H-canaliculatus_F_contig1213.1847.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1213.1847.1
Unique NamemRNA_H-canaliculatus_F_contig1213.1847.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1213.1847.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 4.470e-85
Identity = 212/312 (67.95%), Postives = 225/312 (72.12%), Query Frame = 2 
Query:   44 DAAMNPDISDGEDSDDEVSLLVVDEDELNTSLSEAGI--KVEAEGTSVEVSVLSEDVSTFLMFTPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGRNARLLDFSDILKACRGPERGGLPRPLVMKFSRSEALALSPPASPAPSPSLSSALPQGKDVNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARRIPGMSHIKGVLRAELQAQGMLGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPGEGIFLNMLRRLESVDVAGEDSPRTAAA 973
            D  ++PD+ D  DSDDEVSLLVVDEDELNT+L+EAGI  KV+ EG+SVEVSVLSEDVSTFLMF PEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNG NARLLDF+DILKACRGP+RGGLPRPLVMKFSRSEAL  SPPASPA          +G+   A      XXXXXXXXXXXXX                                EAR IPGMSHIKGV RAELQAQGMLGGS   XXXXXXXXXXXXXX                 S PGEG+FLNMLRRLE+VDVAGEDSPR AAA
Sbjct:    7 DVGVDPDMDD--DSDDEVSLLVVDEDELNTTLNEAGIQVKVDKEGSSVEVSVLSEDVSTFLMFAPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEAL--SPPASPAXXXXXXXTAERGQASAATSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPGG-----------EAR-IPGMSHIKGVFRAELQAQGMLGGSGDGXXXXXXXXXXXXXXDS---------------SPPGEGLFLNMLRRLENVDVAGEDSPRVAAA 287
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BLAST of mRNA_H-canaliculatus_F_contig1213.1847.1 vs. uniprot
Match: D7FQI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI4_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 2.270e-75
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 2 
Query:   53 MNPDISDGEDSDDEVSLLVVDEDELNTSLSEAGI--KVEAEGTSVEVSVLSEDVSTFLMFTPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGRNARLLDFSDILKACRGPERGGLPRPLVMKFSRSEALALSPPASPAP 493
            M+PD+ D  DSDDEVSLLVVDEDELNT+L+EAGI  KV+AEG+SVEVSVLSEDVSTFLMF PEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNG NARLLDF+DILKACRGP+RGGLPRPLVMKFSRSEAL  SPPASPAP
Sbjct:   10 MDPDMDD--DSDDEVSLLVVDEDELNTTLNEAGIQVKVDAEGSSVEVSVLSEDVSTFLMFAPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEAL--SPPASPAP 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1213.1847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZQ7_9PHAE4.470e-8567.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQI4_ECTSI2.270e-7588.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1213contigH-canaliculatus_F_contig1213:52..2865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008780.1
Exons5
Model size1066
Cds size1041
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1213.1847.1prot_H-canaliculatus_F_contig1213.1847.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1213 52..2840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.6788044-CDS-H-canaliculatus_F_contig1213:51..3871622928926.6788044-CDS-H-canaliculatus_F_contig1213:51..387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 52..387 -
1696845615.34613-CDS-H-canaliculatus_F_contig1213:51..3871696845615.34613-CDS-H-canaliculatus_F_contig1213:51..387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 52..387 -
1622928926.691613-CDS-H-canaliculatus_F_contig1213:761..10411622928926.691613-CDS-H-canaliculatus_F_contig1213:761..1041Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 762..1041 -
1696845615.361817-CDS-H-canaliculatus_F_contig1213:761..10411696845615.361817-CDS-H-canaliculatus_F_contig1213:761..1041Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 762..1041 -
1622928926.706872-CDS-H-canaliculatus_F_contig1213:1460..15941622928926.706872-CDS-H-canaliculatus_F_contig1213:1460..1594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 1461..1594 -
1696845615.3713436-CDS-H-canaliculatus_F_contig1213:1460..15941696845615.3713436-CDS-H-canaliculatus_F_contig1213:1460..1594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 1461..1594 -
1622928926.7201161-CDS-H-canaliculatus_F_contig1213:2108..22671622928926.7201161-CDS-H-canaliculatus_F_contig1213:2108..2267Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 2109..2267 -
1696845615.384095-CDS-H-canaliculatus_F_contig1213:2108..22671696845615.384095-CDS-H-canaliculatus_F_contig1213:2108..2267Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 2109..2267 -
1622928926.7313845-CDS-H-canaliculatus_F_contig1213:2708..28401622928926.7313845-CDS-H-canaliculatus_F_contig1213:2708..2840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 2709..2840 -
1696845615.4011023-CDS-H-canaliculatus_F_contig1213:2708..28401696845615.4011023-CDS-H-canaliculatus_F_contig1213:2708..2840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1213 2709..2840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.7438512-UTR-H-canaliculatus_F_contig1213:2840..28651622928926.7438512-UTR-H-canaliculatus_F_contig1213:2840..2865Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1213 2841..2865 -
1696845615.409822-UTR-H-canaliculatus_F_contig1213:2840..28651696845615.409822-UTR-H-canaliculatus_F_contig1213:2840..2865Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1213 2841..2865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1213.1847.1

>prot_H-canaliculatus_F_contig1213.1847.1 ID=prot_H-canaliculatus_F_contig1213.1847.1|Name=mRNA_H-canaliculatus_F_contig1213.1847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=347bp
MAAKTNDAAMNPDISDGEDSDDEVSLLVVDEDELNTSLSEAGIKVEAEGT
SVEVSVLSEDVSTFLMFTPEEEYLGAKVTGFVPREDGGLSALEMHGQLLE
GDVLTHLNGRNARLLDFSDILKACRGPERGGLPRPLVMKFSRSEALALSP
PASPAPSPSLSSALPQGKDVNAAAAAAAAAASKSDTAGGGGATSGASSLL
ADLDDFMGGLSSTAAAAAAAAGGEARRIPGMSHIKGVLRAELQAQGMLGG
SGSGSGDGESGGDAGRGGGGGGGGGGGGGNGSGNASSPGEGIFLNMLRRL
ESVDVAGEDSPRTAAAAAVAATGGSGGSDVSLDGDDGDCVEGGGRRG
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mRNA from alignment at H-canaliculatus_F_contig1213:52..2865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1213.1847.1 ID=mRNA_H-canaliculatus_F_contig1213.1847.1|Name=mRNA_H-canaliculatus_F_contig1213.1847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2814bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1213:52..2865- (Hapterophycus canaliculatus Oshoro5f female)
TGTACCACTGCTGTCAGCGTCCTGCATGGCAGCCAAAACGAACGACGCCG
CGATGAACCCTGATATTTCGGATGGAGAAGATTCAGACGACGAGGTCTCC
CTGTTGGTAGTCGATGAGGATGAGCTCAACACGTCGCTGAGCGAAGCTGG
CATAAAGGTGCGCACTGTTCAAAAAGAAAGAACCGCTCTCTTCGTAGACA
CGTTTCGTCGAGATTTTGAAGCCTTGATTGCACTGGGTGTTGTTCTCCAA
CTGCGGCCGCTCCTATCGACGACGATGCAGCTCTTTCTTCGTCGTTGGTG
CTGTAAACTTGATATCCAGGACCATCAAGTCCTATATTTCTCGGCGCACC
GCTGCACCTTTTGAGAACGACACCTCGAACACGTTCCGACTCGAACCTGA
ACCTTTCTCTTCGCGGAAAAATTCTGGGAAAACATGATGAAGGCAGCCCC
GCCGCTCCAGCGATCCCGTGCTCCGTATTCGAACGCAGCGCGTGCTACTG
TGTACAACACAGCAGCCACAGCAGTGACGAACGCCTACTCCTCTCGTCTG
CTCTCCCCCTCCTCCTCGTCCTCCTCCTCCTCGTTCTCCTCGCGGCAGGT
CGAAGCAGAAGGCACCTCGGTGGAAGTGAGCGTCCTGAGCGAGGATGTCT
CCACCTTCCTCATGTTTACCCCCGAAGAGGAGTACCTCGGCGCAAAGGTT
ACCGGCTTCGTCCCGAGGGAGGACGGGGGGCTCAGTGCCCTCGAGATGCA
CGGCCAGGTGCGTGCATGCGTGGGCTTGCATGCGTGCATGCGTGCGTGCG
TGCGTGCGAAGGGCGTGTGCCGGGACACTTGCGGTGAAAGCGCGCTTTTG
GTGTAACAGCCGGGCTTGTAGATCCTCCGCCACTGGGAAGAGTTGCTCGC
GAGAGAACAACAGGGCTACTTTTGACTCGCCGTCATGTTGCCGTCTACCT
GGTACTCGGTTGGTGCAGCCGAAGACAGCTGTCACAGGGAGTGCGAATCC
GTTTTGTTCTTTCCTAGCGAGTGCCTTTTCTGAATTGGCGGAAGCATCGA
TTCGCTGCCGATGCCTGTAAAGAACTGCTGTGTTTCCACGGTGTTCTTTT
CAGCGGTGCTGCTGCGTAGCGAGCCGCTATAAAATGCTATTTTCCGGGCT
GTATACCAACGTATGTTGCATCCGCAACAGAGCGGCAACGGCAGCTGGCC
CGCTGCGTATGGTCGAATAACCGAAAATCCTTCTCTTGTCATGCAACTTC
CTCGTCCTACGAAATCGTAAGCTCTTGGAGGGGGACGTCCTCACTCACCT
GAACGGGAGGAACGCTCGCCTCCTGGACTTCTCCGACATCCTCAAGGCCT
GCAGGGGGCCGGAAAGGGGCGGGCTTCCTCGCCCTCTGGTCATGAAGTTT
TCCAGGTCAGCATCAATGGCCGCGCGCGCTTGGGATGCGGACCGCGTGTG
TGCCCCGATACAGCACCAGTAGCACCAGCAGCACCAGCACCAGCACCAGC
AGCACCAGCACGAGCTGAAGCACTGCTCTAGAGGACAGAAAATCTCGGCT
TTCTGTCGTCTGCGGACTACTGATTTGTTCCCCCACCTGCTGAGTTATCC
GAGCCGGAGGCGTGATTCTGACGCCATCGCCCTGCAACATGTTTTTCACT
CTGGAGTGCTTTTGACTTTGGTCGGCGCCGTGACCCACCGACGTAGAGAT
ACACCGCTGGTCGCTTGCGCCCTGCAGGTACTCGCTCCGCTCGCCCGCGA
TATACCCCGAACGCTCCTAGAACCCCTCCGCCCCTTTTCTGTCACCTGCC
TCGCCTCGTGTTGCACCGCTGCAGGTCCGAAGCGCTAGCGCTCTCGCCCC
CGGCTTCCCCGGCCCCCTCCCCCTCCCTCTCTTCCGCCTTGCCACAAGGA
AAAGATGTAAATGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTTCCAAGTC
CGATACGGCCGGGGGCGGCGGCGCCACCAGCGGAGCGTCCTCGCTGCTGG
CTGACCTCGACGACTTCATGGGAGGCTTGAGCTCCACGGCGGCTGCGGCG
GCTGCGGCTGCGGGAGGGGAAGCGCGACGAATACCCGGGATGTCGCACAT
CAAGGTGCGGCGGCGGGGCTGTTGTTGTTGCGTTTTTGATTGGCGCTCCT
TGGGCCTCGTTGGCGTGACTAAGTGTTGGCTGGGCGTGCCGGGAGGGGGG
GGGGGGCGTTCTTCGTCCCCTCTCGAGAGGCAGCACGGCCGCTTTTTTTT
CTGGCGGTGTCTTCGTTTTCCCACCGGACAAGAATCCGTTGCTGGGCTTA
AAAAAATAAAATAAACAATGTTCTTTGCTCGTATGACAACCATTCACCCT
CACTGGTTCTCTGGACGCCCCCGCGAGCGTGTGAAACCCTATATGCCGAG
CCTCAAAACAAGTGCGCACACGGAAAAGTCGTGTTTCTCACGCGGAGTTT
GACAGTGCCTTGGGGTCGCGCGTGTCAGGGCGTCCTGCGGGCTGAGCTCC
AGGCCCAAGGTATGCTGGGAGGGAGCGGTAGCGGCAGCGGGGACGGAGAG
AGCGGCGGCGATGCAGGCCGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCAATGGTAGCGGGAATGCTTCCTCGCCAGGAGAAGGTATTT
TCCTGAACATGTTGCGCCGGCTGGAGAGCGTCGACGTGGCGGGAGAGGAC
AGTCCCAGGACGGCGGCAGCGGCGGCGGTGGCGGCGACGGGTGGCAGCGG
CGGGAGTGACGTGAGCCTTGATGGAGACGACGGGGACTGCGTTGAAGGGG
GCGGACGAAGGGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1213:52..2865-

>mRNA_H-canaliculatus_F_contig1213.1847.1 ID=mRNA_H-canaliculatus_F_contig1213.1847.1|Name=mRNA_H-canaliculatus_F_contig1213.1847.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2082bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1213:52..2865- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAGCCAAAACGAACGACGCCGCGATGAACCCTGATATTTCGGATGG
AGAAGATTCAGACGACGAGGTCTCCCTGTTGGTAGTCGATGAGGATGAGC
TCAACACGTCGCTGAGCGAAGCTGGCATAAAGATGGCAGCCAAAACGAAC
GACGCCGCGATGAACCCTGATATTTCGGATGGAGAAGATTCAGACGACGA
GGTCTCCCTGTTGGTAGTCGATGAGGATGAGCTCAACACGTCGCTGAGCG
AAGCTGGCATAAAGGTCGAAGCAGAAGGCACCTCGGTGGAAGTGAGCGTC
CTGAGCGAGGATGTCTCCACCTTCCTCATGTTTACCCCCGAAGAGGAGTA
CCTCGGCGCAAAGGTTACCGGCTTCGTCCCGAGGGAGGACGGGGGGCTCA
GTGCCCTCGAGATGCACGGCCAGGTCGAAGCAGAAGGCACCTCGGTGGAA
GTGAGCGTCCTGAGCGAGGATGTCTCCACCTTCCTCATGTTTACCCCCGA
AGAGGAGTACCTCGGCGCAAAGGTTACCGGCTTCGTCCCGAGGGAGGACG
GGGGGCTCAGTGCCCTCGAGATGCACGGCCAGCTCTTGGAGGGGGACGTC
CTCACTCACCTGAACGGGAGGAACGCTCGCCTCCTGGACTTCTCCGACAT
CCTCAAGGCCTGCAGGGGGCCGGAAAGGGGCGGGCTTCCTCGCCCTCTGG
TCATGAAGTTTTCCAGCTCTTGGAGGGGGACGTCCTCACTCACCTGAACG
GGAGGAACGCTCGCCTCCTGGACTTCTCCGACATCCTCAAGGCCTGCAGG
GGGCCGGAAAGGGGCGGGCTTCCTCGCCCTCTGGTCATGAAGTTTTCCAG
GTCCGAAGCGCTAGCGCTCTCGCCCCCGGCTTCCCCGGCCCCCTCCCCCT
CCCTCTCTTCCGCCTTGCCACAAGGAAAAGATGTAAATGCTGCTGCTGCT
GCTGCTGCTGCCGCTGCTTCCAAGTCCGATACGGCCGGGGGCGGCGGCGC
CACCAGCGGAGCGTCCTCGCTGCTGGCTGACCTCGACGACTTCATGGGAG
GCTTGAGCTCCACGGCGGCTGCGGCGGCTGCGGCTGCGGGAGGGGAAGCG
CGACGAATACCCGGGATGTCGCACATCAAGGTCCGAAGCGCTAGCGCTCT
CGCCCCCGGCTTCCCCGGCCCCCTCCCCCTCCCTCTCTTCCGCCTTGCCA
CAAGGAAAAGATGTAAATGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTTC
CAAGTCCGATACGGCCGGGGGCGGCGGCGCCACCAGCGGAGCGTCCTCGC
TGCTGGCTGACCTCGACGACTTCATGGGAGGCTTGAGCTCCACGGCGGCT
GCGGCGGCTGCGGCTGCGGGAGGGGAAGCGCGACGAATACCCGGGATGTC
GCACATCAAGGGCGTCCTGCGGGCTGAGCTCCAGGCCCAAGGTATGCTGG
GAGGGAGCGGTAGCGGCAGCGGGGACGGAGAGAGCGGCGGCGATGCAGGC
CGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGGTAG
CGGGAATGCTTCCTCGCCAGGAGAAGGTATTTTCCTGAACATGTTGCGCC
GGCTGGAGAGCGTCGACGTGGCGGGAGAGGACAGTCCCAGGACGGCGGCA
GCGGCGGCGGTGGCGGCGACGGGTGGCAGCGGCGGGAGTGACGTGAGCCT
TGATGGAGACGACGGGGACTGCGTTGAAGGGGGCGGACGAAGGGGAGGCG
TCCTGCGGGCTGAGCTCCAGGCCCAAGGTATGCTGGGAGGGAGCGGTAGC
GGCAGCGGGGACGGAGAGAGCGGCGGCGATGCAGGCCGCGGTGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCAATGGTAGCGGGAATGCTTCCT
CGCCAGGAGAAGGTATTTTCCTGAACATGTTGCGCCGGCTGGAGAGCGTC
GACGTGGCGGGAGAGGACAGTCCCAGGACGGCGGCAGCGGCGGCGGTGGC
GGCGACGGGTGGCAGCGGCGGGAGTGACGTGAGCCTTGATGGAGACGACG
GGGACTGCGTTGAAGGGGGCGGACGAAGGGGA
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